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Volumn 7, Issue 3, 1998, Pages 232-239

Characterization of an A/T-rich family of sequences from channel catfish (Ictalurus punctatus)

Author keywords

[No Author keywords available]

Indexed keywords

DNA POLYMORPHISM; EXPRESSION VECTOR; GENOME; HOMOLOGOUS RECOMBINATION; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; REPETITIVE DNA; SEQUENCE ANALYSIS;

EID: 0032168052     PISSN: 10536426     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (27)

References (43)
  • 1
    • 0029392459 scopus 로고
    • Matrix attachment regions and transcribed sequences within a long chromosomal continuum containing maize Adh1
    • Avramova, Z., SanMiguel, P., Georgieva, E., and Bennetzen, J.L. (1995). Matrix attachment regions and transcribed sequences within a long chromosomal continuum containing maize Adh1. Plant Cell 7:1667-1680.
    • (1995) Plant Cell , vol.7 , pp. 1667-1680
    • Avramova, Z.1    SanMiguel, P.2    Georgieva, E.3    Bennetzen, J.L.4
  • 2
    • 0025943109 scopus 로고
    • Dynamic chromatin: The regulatory domain organization of eukaryotic gene loci
    • Bonifer, C., Hecht, A., Saueressig, H., Winter, D.M., and Sippel, A.E. (1991). Dynamic chromatin: the regulatory domain organization of eukaryotic gene loci. J Cell Biochem 47:99-108.
    • (1991) J Cell Biochem , vol.47 , pp. 99-108
    • Bonifer, C.1    Hecht, A.2    Saueressig, H.3    Winter, D.M.4    Sippel, A.E.5
  • 3
    • 0026757184 scopus 로고
    • Homeotic protein binding sites, origins of replication and nuclear matrix anchorage sites share the ATTA and ATTTA motifs
    • Boulikas, T. (1992). Homeotic protein binding sites, origins of replication and nuclear matrix anchorage sites share the ATTA and ATTTA motifs. J Cell Biochem 50:1-13.
    • (1992) J Cell Biochem , vol.50 , pp. 1-13
    • Boulikas, T.1
  • 4
    • 0028087993 scopus 로고
    • Transcription factor binding sites in the matrix attachment region (MAR) of the chicken alpha-globin gene
    • Boulikas, T. (1994). Transcription factor binding sites in the matrix attachment region (MAR) of the chicken alpha-globin gene. J Cell Biochem 55:513-29.
    • (1994) J Cell Biochem , vol.55 , pp. 513-529
    • Boulikas, T.1
  • 5
    • 0027491391 scopus 로고
    • Multitude of inverted repeats characterizes a class of anchorage sites of chromatin loops to the nuclear matrix
    • Boulikas, T., and Kong, C.F. (1993). Multitude of inverted repeats characterizes a class of anchorage sites of chromatin loops to the nuclear matrix. J Cell Biochem 53:1-12.
    • (1993) J Cell Biochem , vol.53 , pp. 1-12
    • Boulikas, T.1    Kong, C.F.2
  • 6
    • 0029257167 scopus 로고
    • Development of position-independent expression vectors and their transfer into transgenic fish
    • Caldovic, L., and Hackett, P.J. (1995). Development of position-independent expression vectors and their transfer into transgenic fish. Mol Mar Biol Biotechnol 4:51-61.
    • (1995) Mol Mar Biol Biotechnol , vol.4 , pp. 51-61
    • Caldovic, L.1    Hackett, P.J.2
  • 7
    • 0022571508 scopus 로고
    • The evolution of restricted recombination and the accumulation of repeated DNA sequences
    • Charlesworth, B., Langley, C., and Stephan, W. (1986). The evolution of restricted recombination and the accumulation of repeated DNA sequences. Genetics 112:947-962.
    • (1986) Genetics , vol.112 , pp. 947-962
    • Charlesworth, B.1    Langley, C.2    Stephan, W.3
  • 8
    • 0022553738 scopus 로고
    • Chromosomal loop anchorage of the kappa immunoglobulin gene occurs next to the enhancer in a region containing topoisomerase II sites
    • Cockerill, P.N., and Garrard, W.T. (1986). Chromosomal loop anchorage of the kappa immunoglobulin gene occurs next to the enhancer in a region containing topoisomerase II sites. Cell 44:273-282.
    • (1986) Cell , vol.44 , pp. 273-282
    • Cockerill, P.N.1    Garrard, W.T.2
  • 9
    • 0027416353 scopus 로고
    • Transcriptional regulation of multigene loci: Multilevel control
    • Dillon, N., and Grossveld, F. (1993). Transcriptional regulation of multigene loci: multilevel control. Trends Genet 4:134-137.
    • (1993) Trends Genet , vol.4 , pp. 134-137
    • Dillon, N.1    Grossveld, F.2
  • 10
    • 0025900114 scopus 로고
    • Boundary functions in the control of gene expression
    • Eisenberg, J.C., and Elgin, S.C. (1991). Boundary functions in the control of gene expression. Trends Genet 7:335-340.
    • (1991) Trends Genet , vol.7 , pp. 335-340
    • Eisenberg, J.C.1    Elgin, S.C.2
  • 12
    • 0024947069 scopus 로고
    • Studies on scaffold attachment sites and their relation to genome function
    • Gasser, S.M., Amati, B.B., Cardenas, M.E., and Hofmann, J.F. (1989). Studies on scaffold attachment sites and their relation to genome function. Int Rev Cytol 119:57-96.
    • (1989) Int Rev Cytol , vol.119 , pp. 57-96
    • Gasser, S.M.1    Amati, B.B.2    Cardenas, M.E.3    Hofmann, J.F.4
  • 13
    • 0030817790 scopus 로고    scopus 로고
    • Rapid identification and isolation of zebrafish cDNA clones
    • Gong, Z., Yan, T., Liao, J., Lee, S.E., He, J., and Hew, C.L. (1997). Rapid identification and isolation of zebrafish cDNA clones. Gene 201:87-98.
    • (1997) Gene , vol.201 , pp. 87-98
    • Gong, Z.1    Yan, T.2    Liao, J.3    Lee, S.E.4    He, J.5    Hew, C.L.6
  • 15
    • 0027295543 scopus 로고
    • Purification and characterization of nuclear scaffold proteins which bind to a highly repetitive bent DNA from rat liver
    • Hibino, Y., Nakamura, K., Asano, S., and Sugano, N. (1993). Purification and characterization of nuclear scaffold proteins which bind to a highly repetitive bent DNA from rat liver. Biochim Biophys Acta 1174:162-170.
    • (1993) Biochim Biophys Acta , vol.1174 , pp. 162-170
    • Hibino, Y.1    Nakamura, K.2    Asano, S.3    Sugano, N.4
  • 16
    • 0031311594 scopus 로고    scopus 로고
    • Repetitive elements and their genetic applications in zebrafish
    • Izsvak, Z., Ivics, Z., and Hackett, P.B. (1997). Repetitive elements and their genetic applications in zebrafish. Biochem Cell Biol 75:507-523.
    • (1997) Biochem Cell Biol , vol.75 , pp. 507-523
    • Izsvak, Z.1    Ivics, Z.2    Hackett, P.B.3
  • 17
    • 0029881045 scopus 로고    scopus 로고
    • Sequences attaching loops of nuclear and mitochondrial DNA to underlying structures in human cells: The role of transcription units
    • Jackson, D.A., and Bartlett, J. (1996). Sequences attaching loops of nuclear and mitochondrial DNA to underlying structures in human cells: the role of transcription units. Nucleic Acids Res 24:1212-1219.
    • (1996) Nucleic Acids Res , vol.24 , pp. 1212-1219
    • Jackson, D.A.1    Bartlett, J.2
  • 18
    • 0027154954 scopus 로고
    • Adenine phosphoribosyltransferase genes in two Drosophila species: Dosage compensation, a nuclear matrix attachment site, and a novel intron position
    • Johnson, D.H. (1993). Adenine phosphoribosyltransferase genes in two Drosophila species: dosage compensation, a nuclear matrix attachment site, and a novel intron position. Mol Gen Genet 238:383-389.
    • (1993) Mol Gen Genet , vol.238 , pp. 383-389
    • Johnson, D.H.1
  • 19
    • 0026027982 scopus 로고
    • A position effect assay for boundaries of higher order chromosomal domains
    • Kellum, R., and Schedl, P. (1991). A position effect assay for boundaries of higher order chromosomal domains. Cell 64:941-950.
    • (1991) Cell , vol.64 , pp. 941-950
    • Kellum, R.1    Schedl, P.2
  • 20
    • 0023256559 scopus 로고
    • Slipped-strand mispairing: A major mechanism for DNA sequence evolution
    • Levinson, G., and Gutman, G.A. (1987). Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol Biol Evol 4:203-221.
    • (1987) Mol Biol Evol , vol.4 , pp. 203-221
    • Levinson, G.1    Gutman, G.A.2
  • 21
    • 0028099155 scopus 로고
    • Interphase chromosomes of Friend-S cells are attached to the matrix structures through the centromeric/ telomeric regions
    • Markova, D., Donev, R., Patriotis, C., and Djondjurov, L. (1994). Interphase chromosomes of Friend-S cells are attached to the matrix structures through the centromeric/ telomeric regions. DNA Cell Biol 13:941-951.
    • (1994) DNA Cell Biol , vol.13 , pp. 941-951
    • Markova, D.1    Donev, R.2    Patriotis, C.3    Djondjurov, L.4
  • 22
    • 0019820757 scopus 로고
    • Enrichment of satellite DNA on the nuclear matrix of bovine cells
    • Matsumoto, L.H. (1981). Enrichment of satellite DNA on the nuclear matrix of bovine cells. Nature 294:481-482.
    • (1981) Nature , vol.294 , pp. 481-482
    • Matsumoto, L.H.1
  • 23
    • 0026651977 scopus 로고
    • Matrix-attachment regions can impart position-independent regulation of a tissue-specific gene in transgenic mice
    • McKnight, R.A., Shamay, A., Sankaran, L., Wall, R.J., and Henninghausen, L. (1992). Matrix-attachment regions can impart position-independent regulation of a tissue-specific gene in transgenic mice. Proc Natl Acad Sci USA 89:6943-6947.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 6943-6947
    • McKnight, R.A.1    Shamay, A.2    Sankaran, L.3    Wall, R.J.4    Henninghausen, L.5
  • 24
    • 0020075749 scopus 로고
    • Nucleotide sequences of highly repeated DNAs: Compilation and comments
    • Milklos, G., and Gill, A. (1982). Nucleotide sequences of highly repeated DNAs: compilation and comments. Genet Res 39:1-30.
    • (1982) Genet Res , vol.39 , pp. 1-30
    • Milklos, G.1    Gill, A.2
  • 25
    • 0023053636 scopus 로고
    • Genes and loops in 320 000 base pairs of the Drosophila melanogaster chromosome
    • Mirkovitch, J., Spierer, P., and Laemmli, U.K. (1986). Genes and loops in 320 000 base pairs of the Drosophila melanogaster chromosome. J Mol Biol 190:255-258.
    • (1986) J Mol Biol , vol.190 , pp. 255-258
    • Mirkovitch, J.1    Spierer, P.2    Laemmli, U.K.3
  • 26
    • 0025272208 scopus 로고
    • The chicken lysozyme 5′ matrix attachment region increases transcription from a heterologous promoter in heterologous cells and dampens position effects on the expression of transfected genes
    • Phi, V.L., von, K.J., Ostertag, W., and Stratling, W.H. (1990). The chicken lysozyme 5′ matrix attachment region increases transcription from a heterologous promoter in heterologous cells and dampens position effects on the expression of transfected genes. Mol Cell Biol 10:2302-2307.
    • (1990) Mol Cell Biol , vol.10 , pp. 2302-2307
    • Phi, V.L.1    Von, K.J.2    Ostertag, W.3    Stratling, W.H.4
  • 27
    • 0018666434 scopus 로고
    • The similarity of DNA sequences remaining bound to scalfold upon nuclease treatment of interphase nuclei and metaphase chromosomes
    • Razin, S.V., Mantieva, V.L., and Georgiev, G.P. (1979). The similarity of DNA sequences remaining bound to scalfold upon nuclease treatment of interphase nuclei and metaphase chromosomes. Nucleic Acids Res 7:1713-1735.
    • (1979) Nucleic Acids Res , vol.7 , pp. 1713-1735
    • Razin, S.V.1    Mantieva, V.L.2    Georgiev, G.P.3
  • 28
    • 0022432484 scopus 로고
    • Rapid transfer of DNA from agarose gels to nylon membranes
    • Reed, K.C., and Mann, D.A. (1985). Rapid transfer of DNA from agarose gels to nylon membranes. Nucleic Acids Res 13:7207-7221.
    • (1985) Nucleic Acids Res , vol.13 , pp. 7207-7221
    • Reed, K.C.1    Mann, D.A.2
  • 29
    • 0028345440 scopus 로고
    • Characterization of two intronic nuclear-matrix-attachment regions in the human DNA topoisomerase I gene
    • Romig, H., Ruff, J., Fackelmayer, F.O., Patil, M.S., and Richter, A. (1994). Characterization of two intronic nuclear-matrix-attachment regions in the human DNA topoisomerase I gene. Eur J Biochem 221:411-419.
    • (1994) Eur J Biochem , vol.221 , pp. 411-419
    • Romig, H.1    Ruff, J.2    Fackelmayer, F.O.3    Patil, M.S.4    Richter, A.5
  • 31
    • 0017681196 scopus 로고
    • DNA sequencing with chain-terminating inhibitors
    • Sanger, F., Nicklen, S., and Coulson, A.R. (1977). DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74:5463-5467.
    • (1977) Proc Natl Acad Sci USA , vol.74 , pp. 5463-5467
    • Sanger, F.1    Nicklen, S.2    Coulson, A.R.3
  • 32
    • 0020441897 scopus 로고
    • Nonrandom distribution of repeated DNA sequences with respect to supercoiled loops and the nuclear matrix
    • Small, D., Nelkin, B., and Vogelstein, B. (1982). Nonrandom distribution of repeated DNA sequences with respect to supercoiled loops and the nuclear matrix. Proc Natl Acad Sci USA 79:5911-5915.
    • (1982) Proc Natl Acad Sci USA , vol.79 , pp. 5911-5915
    • Small, D.1    Nelkin, B.2    Vogelstein, B.3
  • 33
    • 0016700864 scopus 로고
    • Detection of specific sequences among DNA fragments separated by gel electrophoresis
    • Southern, E. (1975). Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol 98:503-517.
    • (1975) J Mol Biol , vol.98 , pp. 503-517
    • Southern, E.1
  • 34
    • 0024538748 scopus 로고
    • Tandem-repetitive noncoding DNA: Forms and forces
    • Stephan, W. (1989). Tandem-repetitive noncoding DNA: forms and forces. Mol Biol Evol 6:198-212.
    • (1989) Mol Biol Evol , vol.6 , pp. 198-212
    • Stephan, W.1
  • 35
    • 0028140177 scopus 로고
    • Possible role of natural selection in the formation of tandem-repetitive noncoding DNA
    • Stephan, W., and Cho, S. (1994). Possible role of natural selection in the formation of tandem-repetitive noncoding DNA. Genetics 136:333-341.
    • (1994) Genetics , vol.136 , pp. 333-341
    • Stephan, W.1    Cho, S.2
  • 36
    • 0022528760 scopus 로고
    • Chromatin structure of the chicken lysozyme gene domain as determined by chromatin fractionation and micrococal nuclease digestion
    • Stratling, W.H., and Dolle, A. (1986). Chromatin structure of the chicken lysozyme gene domain as determined by chromatin fractionation and micrococal nuclease digestion. Biochemistry 25:495-502.
    • (1986) Biochemistry , vol.25 , pp. 495-502
    • Stratling, W.H.1    Dolle, A.2
  • 37
    • 0000457381 scopus 로고
    • Preparation of genomic DNA from mammalian tissue
    • Ausubel et al. (eds.), New York: Greene Publishing Associates and Wiley-Interscience
    • Strauss, W. (1989). Preparation of genomic DNA from mammalian tissue. In: Ausubel et al. (eds.), Current Protocols in Molecular Biology. New York: Greene Publishing Associates and Wiley-Interscience, 2.2.1-2.2.3.
    • (1989) Current Protocols in Molecular Biology , pp. 221-223
    • Strauss, W.1
  • 38
    • 0028218602 scopus 로고
    • Excision close to matrix attachment regions of the entire chicken α-globin gene domain by nuclease S1 and characterization of the framing structures
    • Targa, F.R., Razin, S.A., Gallo, C.V. deM, and Scherrer, K. (1994). Excision close to matrix attachment regions of the entire chicken α-globin gene domain by nuclease S1 and characterization of the framing structures. Proc Natl Acad Sci USA 91:4422-4426.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 4422-4426
    • Targa, F.R.1    Razin, S.A.2    Gallo, C.V.DeM.3    Scherrer, K.4
  • 39
    • 0026654592 scopus 로고
    • Partial characterization of nuclear matrix attachment regions from human fibroblast DNA using Alupolymerase reaction
    • Tsongalis, G., Coleman, W., Smith, G., and Kaufman, D. (1992) Partial characterization of nuclear matrix attachment regions from human fibroblast DNA using Alupolymerase reaction. Cancer Res 52:3807-3810.
    • (1992) Cancer Res , vol.52 , pp. 3807-3810
    • Tsongalis, G.1    Coleman, W.2    Smith, G.3    Kaufman, D.4
  • 40
    • 0028011719 scopus 로고
    • The β-phaseolin gene is flanked by matrix-attachment regions
    • van der Geest, A.H.M., Hall, G.E., Spiker, S., and Hall, T.C. (1994). The β-phaseolin gene is flanked by matrix-attachment regions. Plant J 6:413-423.
    • (1994) Plant J , vol.6 , pp. 413-423
    • Van Der Geest, A.H.M.1    Hall, G.E.2    Spiker, S.3    Hall, T.C.4
  • 41
    • 0025189579 scopus 로고
    • Potential genetic functions of tandem repeated DNA sequence blocks in the human genome are based on a highly conserved "chromatin folding code."
    • Vogt, P. (1990). Potential genetic functions of tandem repeated DNA sequence blocks in the human genome are based on a highly conserved "chromatin folding code." Hum Genet 84:301-336.
    • (1990) Hum Genet , vol.84 , pp. 301-336
    • Vogt, P.1
  • 42
    • 0026707543 scopus 로고
    • Code domains in tandem repetitive DNA sequence structures
    • Vogt, P. (1992). Code domains in tandem repetitive DNA sequence structures. Chromosoma 101:585-589.
    • (1992) Chromosoma , vol.101 , pp. 585-589
    • Vogt, P.1


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