Analysis of the spermine synthase gene region in Fugu rubripes, Tetraodon fluviatilis, and Danio rerio

Genomics

Volumn 57, Issue 1, 1999, Pages 164-168

  Boeddrich, Annett ^a   Burgtorf, Carola ^a   Crollius, Hugues Roest ^a   Hennig, Steffen ^a   Bernot, Alain ^a   Clark, Matthew ^a   Reinhardt, Richard ^a   Lehrach, Hans ^a   Francis, Fiona ^a  

^a MAX PLANCK INSTITUTE FOR MOLECULAR GENETICS   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

SPERMINE SYNTHASE;

ARTICLE; FISH; GENE LOCATION; GENE SEQUENCE; HUMAN; MOLECULAR CLONING; MOLECULAR EVOLUTION; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SPECIES DIFFERENCE; X CHROMOSOME;

DANIO RERIO; FUGU RUBRIPES; TAKIFUGU RUBRIPES; TETRAODON FLUVIATILIS;

EID: 0033119472     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1998.5732     Document Type: Article

References (19)

1. Altschul S. F., Gish W., Miller W., Myers E. W., Lipman D. J. Basic local alignment search tool. J. Mol. Biol. 215:1990;403-410.
2. Bankier A. T., Weston K. M., Barrell B. G. Random cloning and sequencing by the M13/dideoxynucleotide chain termination method. Methods Enzymol. 155:1987;51-93.
3. Bonfield J. K., Smith K. F., Staden R. A new DNA sequence assembly program. Nucleic Acids Res. 23:1995;4992-4999.
4. Brenner S., Elgar G., Sandford R., Macrae A., Venkatesh B., Aparicio S. Characterization of the pufferfish (Fugu. Nature. 366:1993;265-268.
5. Dear S., Staden R. A sequence assembly and editing program for efficient management of large projects. Nucleic Acids Res. 19:1991;3907-3911.
6. Ekker M., Speevak M. D., Martin C. C., Joly L., Giroux G., Chevrette M. Stable transfer of zebrafish chromosome segments into mouse cells. Genomics. 33:1996;57-64.
7. Grieff M., Whyte M. P., Thakker R. V., Mazzarella R. Sequence analysis of 139 kb in Xp22.1 containing spermine synthase and the 5′ region of PEX. Genomics. 44:1997;227-231.
8. Grunstein M., Hogness D. S. Colony hybridisation: A method for the isolation of cloned DNAs that contain a specific gene. Proc. Natl. Acad. Sci. USA. 72:1975;3961-3965.
9. Izsvak Z., Ivics Z., Garciaestefania D., Fahrenkrug S. C., Hacket P. B. Dana elements - A family of composite, transfer-RNA-derived short interspersed DNA elements associated with mutational activities in zebrafish (Danio rerio. Proc. Natl. Acad. Sci. USA. 93:1996;1077-1081.
10. Korhonen V. P., Halmekyto M., Kauppinen L., Myohanen S., Wahlfors J., Keinanen T., Hyvonen T., Alhonen L., Eloranta T., Janne J. Molecular cloning of a cDNA encoding human spermine synthase. DNA Cell Biol. 14:1995;841-847.
11. Lorenz B., Francis F., Gempel K., Boddrich A., Josten M., Schmahl W., Schmidt J., Lehrach H., Meitinger T., Strom T. M. Spermine deficiency in Gy mice caused by deletion of the spermine synthase gene. Hum. Mol. Genet. 7:1998;541-547.
12. Meyer R. A., Henley C. M., Meyer M. H., Morgan P. L., McDonald A. G., Mills C., Price D. K. Partial deletion of the spermine synthase gene and the Pex gene in the X-linked hypophosphatemic Gyro (Gy) mouse. Genomics. 48:1998;289-295.
13. Osterhoff C., Ivell R., Kirchhoff C. Cloning of a human epididymis-specific mRNA, HE6, encoding a novel member of the seven transmembrane-domain receptor superfamily. DNA Cell Biol. 16:1997;379-389.
14. Phillips M. S., Fujii J., Khanna V. K., DeLeon S., Yokobata K., de Jong P. J., MacLennan D. H. The structural organization of the human skeletal muscle ryanodine receptor (RYR1) gene. Genomics. 34:1996;24-41.
15. Shimoda N., Chevrette M., Ekker M., Kikuchi Y., Hotta Y., Okamoto H. Mermaid, a family of short interspersed repetitive elements, is useful for zebrafish genome mapping. Biochem. Biophys. Res. Commun. 220:1996;233-237.
16. Solovyev V. V., Salamov A. A., Lawrence C. B. Predicting internal exons by oligonucleotide composition and discriminant analysis of spliceable open reading frames. Nucleic Acids Res. 22:1994;5156-5163.
17. Uberbacher E. C., Mural R. J. Locating protein-coding regions in human DNA sequences by a multiple sensor neural network approach. Proc. Natl. Acad. Sci. USA. 88:1991;11261-11265.
18. Xiao L., Celano P., Mank A. R., Griffin C., Jabs E. W., Hawkins A. L., Casero R. A. Structure of the human spermidine/spermine N1-acetyltransferase gene. Biochem. Biophys. Res. Commun. 187:1992;1493-1502.
19. Zehetner G., Lehrach H. The reference library system. Sharing biological material and experimental data. Nature. 367:1994;489-491.