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note
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Eleven independent clones were obtained from a 4-week-old mouse brain cDNA library that was probed with the motor domain. Northern blot analysis with a motor domain probe detected 5-kb KIF17 mRNA bands in brain and a 3-kb band in the testes, which could be an alternative splice short variant of KIF17.
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21
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0027162896
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M. A. Shakir, T. Fukushige, H. Yasuda, J. Miwa, S. S. Siddiqui, Neuroreport 4, 891 (1993); M. Tabish, Z. K. Siddiqui, K. Nishikawa, S. S. Siddiqui, J. Mol. Biol. 247, 377 (1995).
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0342997510
-
-
note
-
Phylogenetic tree, sequence comparison, and coiled-coil prediction were analyzed as described (18).
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-
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24
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0342997511
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-
note
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2-terminal peptide (αGluRε No59) (33) were provided by M. Mishina. PSD-95, NR2B, synaptotagmin, mLin-2, and mLin-10 mAbs were purchased from Transduction Laboratory, anti-substance P receptor was from Novus, anti-glycine receptor and NR1 mAb from Chemicon, and anti-GABAARβ2 from Santa Cruz. All the protein detection in immunoprecipitants was confirmed by all available antibodies: anti-mLin-10, NR1 antibodies (αGluRζ1 No43 and NR1 mAb), and NR2B antibodies (αGluRε No34, αGluRε No59, and NR2B mAb). The data shown in Figs. 4 and 5 are mAb blots.
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25
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0342563227
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note
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2-terminal, His-tagged full-length KIF17-expressing baculovirus was constructed using the Fast-Bac system (Gibco Life Technologies). High-Five cells (Invitrogen) were infected with the virus for 60 hours in Grace Insect Medium (Gibco Life Technologies) and harvested and purified as described (18).
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26
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0343433130
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-
note
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Supernatant from mouse brain homogenates after centrifugation at 75,000 rpm for 1 hour in a Beckman TL100.3 rotor in HBS (10 mM Hepes, pH 7.4, and 150 mM NaCl) with proteinase inhibitors (1 mM phenylmethyt sulfonyl fluoride, 210 μM leupeptin, 145 μM pepstatin A, 260 μM N-α-ρ-tosyl-L-arginine methyl ester hydrochloride, and 10 mM benzamidine) was centrifuged in a Beckman SW28 rotor for the velocity gradient. Gel-filtration assay was with Superose 6 (Amersham Pharmacia Biotech). Native PAGE was done as described (18).
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-
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27
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0342997507
-
-
note
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2, 1 mM EGTA, 5 mM dithiothreitol, 5 mM Mg-adenosine triphosphate (ATP), and 50 mM NaCl, pH 7.4). Glass surface with KIF17 tailless construct (1-938) also had similar motility on this assay; KIF17 tailless (1-938) and headless (939-1038) mix had the same activity. These deletion mutants were assayed as a positive control for the vesicle motility assay and competition assay.
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-
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28
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0342563220
-
-
note
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For tissue distribution analysis, 4-week-old male mouse total homogenate in RIPA was used; 20 μg of protein was loaded per lane. For neuronal distribution analysis, 5 μg of protein was loaded per lane.
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-
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29
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0342563221
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note
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For immunochemistry, brains from 4-week-old male mice were fixed in 4% paraformaldehyde, 0.1% glutaraldehyde, and 4% sucrose in phosphate-buffered saline (PBS) and slices were prepared as described (18). The cultured hippocampal neurons were fixed in 4% paraformaldehyde and permeabilized with 0.1% Triton X-100. The samples were blocked with 10% bovine serum albumin (BSA) and incubated with anti-KIF17 (5 μg/ml) and pNFH mAb (Sigma, 1:1000 dilution) or MAP2 mAb (Sigma, 1:1000 dilution). For controls, preimmune immunoglobulin G (IgG) was used as the first antibody. After overnight incubation at 4°C, the samples were washed with PBS and incubated with Alexa 488-conjugated goat antibody to rabbit IgG and blocked by 10% BSA, Alexa 568-conjugated goat antibody to mouse IgG+H (Molecular Probes, 1:100 dilution). TOTO-3 (Molecular Probes) was used as a nucleotide marker for the triple staining. For double labeling with polyclonal antibodies (Fig. 6, B and C), biotinylated anti-KIF17 (11) was used and detected with Alexa 568-streptavidin (Molecular Probes) in accordance with the manufacturer's instructions. The samples were observed under a confocal laser scanning microscope (LSM510, Zeiss).
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30
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0343433128
-
-
note
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The floating assay and electron microscopy study were performed as described (18), with slight modification. The postnuclear supernatant of gray matter in IM-Ac (18) buffer was centrifuged with a continuous gradient from 40% to 0% Nycodenz for 4 hours at 65,000 rpm in a Beckman NVTi65 rotor, and 32 fractions were collected. The fraction that contained the highest concentration of KIF17 (26th) (∼0.3 ml) was incubated overnight with 1 μg of anti-KIF17 or 1 μg of control preimmune IgG at 4°C and then with 10 μl of second antibody-coated magnetic beads (Dynal) for 12 hours at 4°C. Then the sample was washed five times and processed for further analysis.
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31
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0029051298
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Y. Okada et al., Cell 81, 769 (1995); N. Saito et al., Neuron 18, 425 (1997).
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Y. Okada et al., Cell 81, 769 (1995); N. Saito et al., Neuron 18, 425 (1997).
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33
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0343433126
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note
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3 (pH 11.5).
-
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34
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-
0343868872
-
-
note
-
+ colonies. Two colonies encoded fragments of mLin-10 gene (457-840), which codes for a portion 99% identical to the corresponding portion of rat Lin-10 (Mint1). cDNA segments were amplified by the polymerase chain reaction (PCR) with specific primers and subcloned into pLexA 01 pB42AD.
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-
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35
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0030770840
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Purified GST-fused COOH-terminus of KIF17 (939-1038) was immobilized on a BIACore CM5 sensor chip, equilibrated with 50 mM Hepes-NaOH (pH 8.0) containing 100 mM NaCl, and superfused with purified mLin-10 (650-840 with His6 on NH2-terminal) at a flow rate of 10 μl/min. Binding activities (in resonance units) were measured as the difference between the baseline value determined 20 s before sample injection and the measurements taken at the indicated time points. All experiments were performed at 25°C with BIACORE3000. Data were analyzed with the BIA evaluation program, version 3.0 [BIACORE; M. Irie et al., Science 277, 1511 (1997)].
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(1997)
Science
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, pp. 1511
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Irie, M.1
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36
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0342997503
-
-
note
-
A pull-down assay was performed with the post-nuclear supernatant obtained from 2-week-old mouse brain lysates in HBST [10 mM Hepes (pH 7.4), 150 mM NaCl, 0.1% Triton X-100, and proteinase inhibitors] and 10 μg of immobilized GST fusion KIF17 tail region recombinant protein or 10 μg of KIFC2 1-433 protein. After 12 hours of incubation, the beads were washed five times and immunoblotted with anti-mLin-10. Recombinant proteins were expressed in E. coli strain BL21(DE3) (Stratagene) with the pGEX vector (Amersham Pharmacia Biotech) and purified by 10 μl of Glutathione Sepharose Fast Flow (Amersham Pharmacia Biotech).
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-
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37
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0343868871
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-
note
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Four-week-old male mouse brains were dissected as reported (18) in HBST buffer. Lysates of the brains (0.5 ml) were incubated with 20 μl of anti-mLin-10 serum and 10 μl of protein A-Sepharose Fast Flow (Amersham Pharmacia Biotech) overnight at 4°C and were washed five times with 0.5 ml of HBST. Sample was loaded at 5 μl per lane. Control is that of normal rabbit IgG.
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38
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0033151584
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K. Jo, R. Derin, M. Li, D. S. Bredt, J. Neurosci. 19, 4189 (1999).
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Jo, K.1
Derin, R.2
Li, M.3
Bredt, D.S.4
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39
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0343868870
-
-
note
-
Total homogenate of brain, prepared from 11-day post coitum embryo to 3-week-old postnate, was loaded at 20 μg per lane on SDS-PAGE, and each protein was detected by Western blotting.
-
-
-
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40
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0343433123
-
-
note
-
The figure shows the fractions of the floating assay (17).
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-
-
41
-
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0342997501
-
-
note
-
A 4-week-old male mouse brain was dissected for use as reported (18) in HBST buffer. Lysates of the brains (0.5 ml) were incubated with 20 μl of anti-KIF17 serum and 10 μl of protein A-Sepharose Fast Flow at 4°C overnight and were washed five times with 0.5 ml of HBST. Sample was loaded at 5 μl per lane. The NR2B was solubilized ∼5% in 0.1% Triton, ∼5% in RIPA, and ∼30% in 1% deoxycholate (Doc) (28). The amount of immunoprecipitated NR2B by KIF17 is ∼5% of the lysates in 0.1% Triton, ∼5% in RIPA, and less in 1% Doc (28). There may be at least two populations of NR2B, with one population incorporated and anchored at the postsynaptic sites, and the other in the vesicles in the cytoplasm (some of which are transported by KIF17, forming complex with mLin-10, mLin-7, and mLin-2). Our immunofluorescence study indicates that strong permeabilization preserves synaptic NMDA receptors but affects the localization of cytoplasmic NMDA receptors, which suggests that strong detergent treatment affects the preservation of cytoplasmic NMDA receptors (28). From these results, we chose 0.1% Triton in this study.
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42
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0029934332
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unpublished data
-
M. Setou and N. Hirokawa, unpublished data; J. Blahos II and R. J. Wenthold, J. Biol. Chem. 271, 15669 (1996).
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Setou, M.1
Hirokawa, N.2
-
44
-
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0343868867
-
-
note
-
Vesicle immunoprecipitation was done as described (18). Extra bands on KIF1A immunoprecipitation products are degradates that appear after incubation. Cover glass chambers (10 μl) coated with microtubules and blocked with BSA (2 mg/ml) were incubated with the floated fraction added with 5 mM adenylyl-imidodiphosphate (AMP-PNP) or ATP and 10 μM taxol at 27°C for 10 min, washed by each buffer, and processed for immunodetection (16). The vesicles on microtubules were observed in differential interference contrast laser scanning microscope (DIC-LSM). For the blocking assay, KIF17 tail peptide (GST-KIF17 939-1038) (22) was incubated with the floated vesicles for 6 hours before the microtubule binding assay. The total concentration of protein was equalized by addition of GST alone.
-
-
-
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45
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0343433122
-
-
note
-
2-terminal peptide (αGluRε No59) each gave the same results.
-
-
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46
-
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0343868868
-
-
note
-
+. NR2B was not detected in the vesicles isolated with anti-KIF3B immunobeads as a control.
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47
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0033529147
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M. Irie et al., Oncogens 18, 2811 (1999).
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Mori, H.1
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52
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0342563218
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note
-
We thank T. Südhof for anti-mLin-10; Y. Hata for anti-mLin-7; M. Mishina for the anti-NR subunits; M. Watanabe, M. Mishina, T. Takahashi, T. Nakata, and Y. Kanai for discussions and advice; K. Yamamoto, L. Guillaud, Y. Ikeda, Y. Okada, M. Kikkawa, S. Nonaka, H. Sato, H. Fukuda, and M. Sugaya for technical assistance; and other members of the Hirokawa lab for technical assistance, stimulating discussions, and valuable advice throughout. Supported by the Japanese Society for Promotion of Science Research Fellowship for Young Scientists (T.N. and D.-H.S.) and by a Special Grant-in-Aid for Center of Excellence from the Japan Ministry of Education, Science, Sports and Culture (N.H.).
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