Mixed viral infection identified using heteroduplex mobility analysis (HMA)

Virology

Volumn 271, Issue 2, 2000, Pages 382-389

  White, Peter A ^a   Li, Zhengqian ^a,b   Zhai, Xinyan ^a,b   Marinos, George ^c   Rawlinson, William D ^a  

^a UNIVERSITY OF SYDNEY   (Australia)

^b BBIRC (Beijing Biochem Immune R   (China)

^c PRINCE OF WALES HOSPITAL   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

HETERODUPLEX;

ANALYTIC METHOD; ARTICLE; CONTROLLED STUDY; DIAGNOSTIC PROCEDURE; DNA DETERMINATION; DNA SEQUENCE; HEPATITIS C VIRUS; HUMAN; MIXED INFECTION; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE ANALYSIS; TORQUE TENO VIRUS; VIRUS CHARACTERIZATION; VIRUS INFECTION;

EUKARYOTA; HEPATITIS C VIRUS; RNA VIRUSES; TT VIRUS;

EID: 0034608201     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.2000.0323     Document Type: Article

References (32)

1. Altschul S. F., Gish W., Miller W., Myers E. W., Lipman D. J. Basic local alignment search tool. J. Mol. Biol. 215:1990;403-410.
2. Ball J. K., Curran R., Berridge S., Grabowska A. M., Jameson C. L., Thomson B. J., Irving W. L., Sharp P. M. TT virus sequence heterogeneity in vivo: Evidence for co-infection with multiple genetic types. J. Gen. Virol. 80:1999;1759-1768.
3. Calvo P. L., Kansopon J., Sra K., Quan S., DiNello R., Guaschino R., Calabrese G., Danielle F., Brunetto M. R., Bonino F., Massaro A. L., Polito A., Houghton M., Weiner A. J. Hepatitis C virus heteroduplex tracking assay for genotype determination reveals diverging genotype 2 isolates in Italian hemodialysis patients. J. Clin. Microbiol. 36:1998;227-233.
4. Chomczynski P., Sacchi N. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162:1987;156-159.
5. Choo Q. L., Kuo G., Weiner A. J., Overby L. R., Bradley D. W., Houghton M. Isolation of a cDNA clone derived from a blood-borne non-A, non-B viral hepatitis genome. Science. 244:1989;359-362.
6. Delwart E. L., Shpaer E. G., Louwagie J., McCutchan F. E., Grez M., Rubsamen-Waigmann H., Mullins J. I. Genetic relationships determined by a DNA heteroduplex mobility assay: Analysis of HIV-1 env genes. Science. 262:1993;1257-1261.
7. Forns X., Hegerich P., Darnell A., Emerson S. U., Purcell R. H., Bukh J. High prevalence of TT virus (TTV) infection in patients on maintenance hemodialysis: Frequent mixed infections with different genotypes and lack of evidence of associated liver disease. J. Med. Virol. 59:1999;313-317.
8. Fujimura Y., Ishimoto S., Shimoyama T., Narita N., Kuze Y., Yoshioka A., Fukui H., Tanaka T., Tsuda F., Okamoto H., Miyakawa Y., Mayumi M. Genotypes and multiple infections with hepatitis C virus in patients with haemophilia A in Japan. J. Viral Hepatitis. 3:1996;79-84.
9. Gussow D., Clackson T. Direct clone characterization from plaques and colonies by the polymerase chain reaction. Nucleic Acids Res. 17:1989.
10. Holland P. V., Barrera J. M., Ercilla M. G., Yoshida C. F. T., Wang Y., Deolim G. A. B., Betlach B., Kuramoto K., Okamoto H. Genotyping hepatitis C virus isolates from Spain, Brazil, China, and Macau by a simplified PCR method. J. Clin. Microbiol. 34:1996;2372-2378.
11. Isobe K., Imoto M., Fukuda Y., Koyama Y., Nakano I., Hayakawa T., Takamatsu J. Hepatitis C virus infection and genotypes in Japanese hemophiliacs. Liver. 15:1995;131-134.
12. Kuo G., Choo Q. L., Alter H. J., Gitnick G. L., Redeker A. G., Purcell R. H., Miyamura T., Dienstag J. L., Alter M. J., Stevens C. E. An assay for circulating antibodies to a major etiologic virus of human non-A, non-B hepatitis. Science. 244:1989;362-364.
13. Lau J. Y., Mizokami M., Kolberg J. A., Davis G. L., Prescott L. E., Ohno T., Perrillo R. P., Lindsay K. L., Gish R. G., Qian K. P. Application of six hepatitis C virus genotyping systems to sera from chronic hepatitis C patients in the United States. J. Infect. Dis. 171:1995;281-289.
14. Miyata H., Tsunoda H., Kazi A., Yamada A., Khan M. A., Murakami J., Kamahora T., Shiraki K., Hino S. Identification of a novel GC-rich 113-nucleotide region to complete the circular, single-stranded DNA genome of TT virus, the first human circovirus. J. Virol. 73:1999;3582-3586.
15. Mushahwar I. K., Erker J. C., Muerhoff A. S., Leary T. P., Simons J. N., Birkenmeyer L. G., Chalmers M. L., Pilot-Matias T. J., Dexai S. M. Molecular and biophysical characterization of TT virus: Evidence for a new virus family infecting humans. Proc. Natl. Acad. Sci. USA. 96:1999;3177-3182.
16. Nishizawa T., Okamoto H., Konishi K., Yoshizawa H., Miyakawa Y., Mayumi M. A novel DNA virus (TTV) associated with elevated transaminase levels in posttransfusion hepatitis of unknown etiology. Biochem. Biophys. Res. Commun. 241:1997;92-97.
17. Okamoto H., Nishizawa T., Kato N., Ukita M., Ikeda H., Iizuka H., Miyakawa Y., Mayumi M. Molecular cloning and characterization of a novel DNA virus (TTV) associated with posttransfusion hepatitis of unknown etiology. Hepatol. Res. 10:1998;1-16.
18. Okamoto H., Sugiyama Y., Okada S., Kurai K., Akahane Y., Sugai Y., Tanaka T., Sato K., Tsuda F., Miyakawa Y. Typing hepatitis C virus by polymerase chain reaction with type-specific primers: Application to clinical surveys and tracing infectious sources. J. Gen. Virol. 73:1992;673-679.
19. Okamoto H., Takahashi M., Nishizawa T., Ukita M., Fukuda M., Tsuda F., Miyakawa Y., Mayumi M. Marked genomic heterogeneity and frequent mixed infection of TT virus demonstrated by PCR with primers from coding and noncoding regions. Virology. 259:1999;428-436.
20. Prescott L. E., Morrison R. S., Simmonds P. Global distribution of transfusion-transmitted virus. N. Eng. J. Med. 339:1998;776-777.
21. Preston F. E., Jarvis L. M., Makris M., Philp L., Underwood J. C. E., Ludlam C. A., Simmonds P. Heterogeneity of hepatitis C virus genotypes in hemophilia - relationship with chronic liver disease. Blood. 85:1995;1259-1262.
22. Sambrook J., Fritsch E. F., Maniatis T. Molecular Cloning: A Laboratory Manual. 1989;Cold Spring Harbor Laboratory, Cold Spring Harbor.
23. Takahashi K., Hoshino H., Ohta Y., Yoshida N., Mishiro S. Very high prevalence of TT virus (TTV) infection in general population of Japan revealed by a new set of PCR primers. Hepatol. Res. 12:1998;233-239.
24. Takayama S., Yamazaki S., Matsuo S., Sugii S. Multiple infection of TT virus (TTV) with different genotypes in Japanese hemophiliacs. Biochem. Biophys. Res. Commun. 256:1999;208-211.
25. Takehisa J., Zekeng L., Ido E., Mboudjeka I., Moriyama H., Miura T., Yamashita M., Gurtler L. G., Hayami M., Kaptue L. Various types of HIV mixed infections in Cameroon. Virology. 245:1998;1-10.
26. Tanaka H., Okamoto H., Luengrojanakul P., Chainuvati T., Tsuda F., Tanaka T., Miyakawa Y., Mayumi M. Infection with an unenveloped DNA virus (TTV) associated with posttransfusion non-A to G hepatitis in hepatitis patients and healthy blood donors in Thailand. J. Med. Virol. 56:1998;234-238.
27. Tuveri R., Rothschild C., Pol S., Reijasse D., Persico T., Gazengel C., Brechot C., Thiers V. Hepatitis C virus genotypes in haemophiliacs - kinetics and reappraisal of mixed infections. J. Med. Virol. 51:1997;36-41.
28. White P. A., Li Z., Rawlinson W. D. Sequence diversity in the 5′-UTR region of GB virus C/hepatitis C virus as assessed by sequencing, heteroduplex mobility assays and single-strand conformation polymorphism. J. Virol. Methods. 83:1999;91-101.
29. White P. A., Zhai X., Carter I., Zhao Y., Rawlinson W. D. Simplified hepatitis C virus genotyping using heteroduplex mobility analysis. J. Clin. Microbiol. 38:2000;477-482.
30. Widell A., Mansson S., Persson N. H., Thysell H., Hermodsson S., Blohme I. Hepatitis C superinfection in hepatitis C virus (HCV)-infected patients transplanted with an HCV-infected kidney. Transplantation. 60:1995;642-647.
31. Wilson J. J., Polyak S. J., Day T. D., Gretch D. R. Characterization of simple and complex hepatitis C virus quasispecies by heteroduplex gel shift analysis: Correlation with nucleotide sequencing. J. Gen. Virol. 76:1995;1763-1771.
32. Wu J. C., Huang I. A., Huang Y. H., Chen J. Y., Sheen I. J. Mixed genotypes infection with hepatitis D virus. J. Med. Virol. 57:1999;64-67.