Phenotypic biomonitoring using multivariate flow cytometric analysis of multi-stained microorganisms

FEMS Microbiology Ecology

Volumn 34, Issue 3, 2001, Pages 187-196

  Wikström, Per ^a   Johansson, Thorsten ^b   Lundstedt, Staffan ^a   Hägglund, Lars ^b   Forsman, Mats ^a,b  

^a SWEDISH DEFENCE RESEARCH AGENCY   (Sweden)

^b UMEÅ UNIVERSITY   (Sweden)

Author keywords

Biomonitoring; Flow cytometry; Partial least square; Phenotype; Principal component analysis

Indexed keywords

AROMATIC COMPOUND; FLUORESCENT DYE; GROUND WATER; NAPHTHALENE;

BIOMONITORING; FLOW CYTOMETRY; METHODOLOGY; MICROBIAL COMMUNITY;

ARTICLE; BIODEGRADATION; BIOLOGICAL MONITORING; FLOW CYTOMETRY; GENOTYPE; MICROBIOLOGY; MULTIVARIATE ANALYSIS; NONHUMAN; PHENOTYPE; PRINCIPAL COMPONENT ANALYSIS; PRIORITY JOURNAL; RANDOM AMPLIFIED POLYMORPHIC DNA; STAINING; WATER CONTAMINATION;

EID: 0034531738     PISSN: 01686496     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-6496(00)00090-8     Document Type: Article

References (34)

1. Survival strategies of bacteria in the natural environment
2. Comparison of substrate utilization and fatty acid analysis of soil microbial communities
3. Fatty acid methyl ester (FAME) profiles as measures of soil ymicrobial community structure
4. Fatty acid patterns of phospholipids and lipopolysaccharides in environmental samples
5. Application of neural computing methods for interpreting phospholipid fatty acid profiles of natural microbial communities
6. Microbial population changes during bioremediation of an experimental oil spill
7. Opening the black box of soil microbial diversity
8. DGGE/TGGE a method for identifying genes from natural ecosystems
9. Dynamics of bacterial community composition and activity during a mesocosm diatom bloom
10. Terminal restriction fragment length polymorphism (T-RFLP): An emerging method for characterizing diversity among homologous populations of amplification products
11. An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics
12. Kinetic bias in estimates of coastal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity
13. Use of length heterogeneity PCR and fatty acid methyl ester profiles to characterize microbial communities in soil
14. Biomonitoring of complex microbial communities using randomly amplified polymorphic DNA (RAPD) technique and principal component analysis (PCA)
15. Influence of TNT transformation on microbial community structure in four different lake microcosms
16. Structure of a natural microbial community in a nitroaromatic contaminated groundwater is altered during biodegradation of extrinsic, but not intrinsic substrates
17. Quantitative properties of random amplified polymorphic DNA (RAPD)
18. Applications of flow cytometry to clinical microbiology
19. Flow cytometry and cell sorting of heterogeneous microbial populations: The importance of single-cell analyses
20. Flow cytometric measurements of cell volumes and DNA contents during culture of indigenous soil bacteria
21. Evaluation of flow cytometry methods for the detection and viability assessment of bacteria from soil
22. The use of multi-parameter flow cytometry to compare the physiological response of Escherichia coli W3110 to glucose limitation during batch, fed-batch and continuous culture cultivations
23. Variable selection and multivariate methods for the identification of microorganisms by flow cytometry
24. Studies on transformation of Escherichia coli with plasmids
25. Studies on lysogenesis. I. The mode of phage liberation by lysogenic Escherichia coli
26. Genetics and biochemistry of phenol degradation by Pseudomonas sp. CF600
27. Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples
28. Principal component analysis
29. Multivariate data analysis in chemistry
30. Biological degradation of selected hydrocarbons in an old PAH/creosote contaminated soil from a gas work site