Structure of a natural microbial community in a nitroaromatic contaminated groundwater is altered during biodegradation of extrinsic, but not intrinsic substrates

Microbial Ecology

Volumn 39, Issue 3, 2000, Pages 203-210

  Wikstrom P ^a   Hagglund L ^a   Forsman, M ^a  

^a SWEDISH DEFENCE RESEARCH AGENCY   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

2,4 DINITROTOLUENE; 4 NITROTOLUENE; BENZOIC ACID; CATABOLISM; CATECHOL 2,3 DIOXYGENASE; COMMUNITY STRUCTURE; GENE TARGETING; GROUND WATER; MICROBIAL COMMUNITY; MICROBIAL DEGRADATION; MICROBIAL GROWTH; NAPHTHALENE; PHENOL; POLYMERASE CHAIN REACTION; RANDOM AMPLIFIED POLYMORPHIC DNA; WATER CONTAMINATION;

BIODEGRADATION; GROUNDWATER; MICROBIAL COMMUNITY;

EID: 0342646905     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (23)

1. Blears MJ, De Grandis SA, Lee H, Trevors JT (1998) Amplified fragment length polymorphism (AFLP): A review of the procedure and its applications. J Ind Microbiol Biotechnol 21:99-114
2. Breen A, Rope AF, Taylor D, Loper JC, Sferra PR (1995) Application of DNA amplification fingerprinting (DAF) to mixed culture bioreactor. J Ind Microbiol 14:10-16
3. Dagley S (1986) Biochemistry of aromatic hydrocarbon degradation in Pseudomonas. In: Gunsalus IC, Sokatch JR (eds) The Bacteria. Academic Press, New York, pp 527-555
4. Eichner CA, Erb RW, Timmis KN, Wagner-Döbler I (1999) Thermal gradient gel electrophoresis analysis of bioprotection from pollutant shocks in the activated sludge microbial community. Appl Environ Microbiol 65:102-109
5. Eriksson L, Hermens JLM, Johansson E, Verhaar HJM, Wold S (1995) Multivariate analysis of aquatic toxicity data with PLS. Aquatic Sciences 57:217-241
6. Franklin RB, Taylor DR, Mills AL (1999) Characterization of microbial communities using randomly amplified polymorphic DNA (RAPD). J Microbiol Methods 35:225-235
7. Heuer H, Smalla K (1997) Application of denaturing gradient gel electrophoresis and temperature gradient gel electrophoresis for studying soil microbial communities. In: van Elsas JD, Trevors JT, Wellington EMH (eds) Modern Soil Microbiology. Marcel Dekker Inc, New York, pp 353-373
8. Jackson JE (1991) A User's Guide to Principal Components John Wiley, New York
9. Jollife IT (1986) Principal component analysis Springer-Verlag, New York
10. Kinner NE, Harvey RW, Hines LE, Metge D, Novarino G (1999) Response of bacteria and protists in a pristine aquifer to an organic perturbation. Abstracts 4th International Symposium on Subsurface Microbiology, Vail CO, 72
11. Larsson P, Wikström P, Forsman M (1999) Quantitative properties of random amplified polymorphic DNA (RAPD). Quantitative Microbiology, Vol. 2, Kluwer Academic Press, in press 2000
12. Lee J-Y, Jung K-H, Choi SH, Kim H-S (1995) Combination of the tod and the toi pathways in redesigning a metabolic route of Pseudomonas putida for the mineralization of a benzene, toluene and p-xylene mixture. Appl Environ Microbiol 61:2211-2217
13. Masai E, Yamada A, Healy JM, Hatta T, Kimbara K, Fukuda M, Yano K (1995) Characterization of biphenyl catabolic genes of gram-positive polychlorinated biphenyl degrader Rhodococcus sp strain RHA1. Appl Environ Microbiol 61:2079-2085
14. Meyer S, Moser R, Neef A, Stahl U, Kämpfer P (1999) Differential detection of key enzymes of polyaromatic-hydrocarbon-degrading bacteria using PCR and gene probes. Microbiology 145:1731-1741
15. Nishino SF, Spain JC (1997) Biodegradation and transformation of nitroaromatic compounds. In: Hurst CJ, Knudsen GR, McInerney MJ, Stetzenbach LD, Walter MV (eds) Manual of Environmental Microbiology. ASM press, Washington DC, pp 776-783
16. Novarino G, Warren A, Butler H, Lambourne G, Boxshall A, Bateman J, Kinner NE, Harvey RW, Mosse RA, Teltsch B (1997) Protistan communities in aquifers: A review. FEMS Microbiol Rev Jul 20:261-275
17. Sambrook J, Fritsch EF, Maniatis T (1989) In: Ford N (ed) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, New York
18. Spain JC (1995) Biodegradation of Nitroaromatic Compounds Plenum Press, New York
19. Tiedje JM (1993) Bioremediation from an ecological perspective. In: In Situ Bioremediation. When Does It Work? Nat Academy Press, Washington DC, pp 110-120
20. van der Meer JR, de Vos WM, Harayama S, Zehnder AJB (1992) Molecular mechanisms of genetic adaption to xenobiotic compounds. Microbiol Rev 56:677-694
21. Wikström P, Andersson A-C, Forsman M (1999) Biomonitoring of complex microbial communities using randomly amplified polymorphic DNA (RAPD) technique and principal component analysis (PCA). FEMS Microbiol Ecol 28:131-139
22. Wikström P, Wiklund A, Andersson A-C, Forsman M (1996) DNA recovery and PCR quantification of catechol 2,3-dioxygenase genes from different soil types. J Biotechnol 52:107-120
23. Williams PA, Sayers JR (1994) The evolution of pathways for aromatic hydrocarbon oxidation in Pseudomonas. Biodegradation 5:195-217