Prediction of Residue-Residue Pair Frequencies in Proteins

Journal of Physical Chemistry B

Volumn 104, Issue 41, 2000, Pages 9755-9764

  Vijayakumar, M ^a   Zhou, Huan Xiang ^a  

^a DREXEL UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER SIMULATION; DENSITY (SPECIFIC GRAVITY); FLOW INTERACTIONS; GEOMETRY; NATURAL FREQUENCIES;

PROTEIN FOLDING; RESIDUE PAIR FREQUENCIES;

PROTEINS;

EID: 0034299558     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp001757f     Document Type: Article

References (24)

1. Hendlich, M.;, Lackner, P.; Weitckus, S.; Floeckner, H.; Froschauer, R.; Gottsbacher, K.; Casari, G.; Sippl, M. J. J. Mol. Biol. 1990, 216, 167.
2. Jones, D.T.; Taylor, W. R.; Thornton, J. M. Nature 1992, 358, 86.
3. Bryant, S. H.; Lawrence, C. E. Proteins: Struct., Funct., Genet. 1993, 16, 92.
4. Kocher, J. P.; Rooman, M. J.; Wodak, S. J. J. Mol. Biol. 1994, 235, 1598.
5. DeBolt, S. E.; Skolnick, J. Protein Eng. 1996, 9, 637.
6. Mirny, L. A.; Shakhnovich, E. I. J. Mol. Biol. 1996, 264, 1164.
7. Mirny, L. A.; Shakhnovich, E. I. J. Mol. Biol. 1998, 283, 507.
8. Rooman, M.; Gilis, D. Eur. J. Biochem. 1998, 254, 135.
9. Skolnick, J.; Kolinski, A. Science 1990, 250, 1121.
10. Sun, S. Protein Sci. 1993, 2, 762.
11. Kolinski A, Skolnick J. Proteins: Struct., Funct., Genet. 1994, 18, 338.
12. Thomas, P. D.; Dill, K. A. J. Mol. Biol. 1996, 257, 457.
13. Vijayakumar, M.; Qian, H.; Zhou, H.-X. Proteins: Struct., Funct., Genet. 1999, 34, 497.
14. Miyazawa, S.; Jernigan, R. L. J. Mol. Biol. 1996, 256, 623.
15. Hobohm, U.; Sander, C. Protein Sci. 1994, 3, 522.
16. Holm, L.; Sander, C. J. Mol. Biol. 1993, 23, 123.
17. Maiorov, V. N.; Grippen, G. M. J. Mol. Biol. 1992, 227, 876.
18. Thoma, P. D.; Dill, K. A. Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 11628.
19. Bahar, I.; Jernigan, R. L. J. Mol. Biol. 1997, 266, 195.
20. Prabhakaran, M.; Ponnuswamy, P. K. J. Theor. Biol. 1980, 87, 623.
21. Bryant, S. H.; Lawrence, C. E. Proteins: Struct., Funct., Genet. 1991, 9, 108.
22. Sippl, M. J. J. Mol. Biol. 1996, 260, 644.
23. Huang, E. S.; Subbiah, S.; Tsai, J.; Levitt, M. J. Mol. Biol. 1996, 257, 716.
24. Sippl, M. J. J. Mol. Biol. 1990, 213, 859.