-
1
-
-
0028351287
-
An improved pair potential to recognize native protein folds
-
Bauer, A. & Beyer, A. (1994). An improved pair potential to recognize native protein folds. Proteins: Struct. Funct. Genet. 18, 254-261.
-
(1994)
Proteins: Struct. Funct. Genet.
, vol.18
, pp. 254-261
-
-
Bauer, A.1
Beyer, A.2
-
2
-
-
0017411710
-
Protein data bank: A computer-based archival file for macromolecular structures
-
Bernstein, F. C., Koetzle, T. F., Williams, G. J. B., Meyer, E. F., Brice, M. D., Jr, Rodgers, J. R., Kennard, O., Shimanouchi, T. & Tasumi, M. (1977). Protein Data Bank: a computer-based archival file for macromolecular structures. J. Mol. Biol. 112, 535-542.
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.B.3
Meyer, E.F.4
Brice M.D., Jr.5
Rodgers, J.R.6
Kennard, O.7
Shimanouchi, T.8
Tasumi, M.9
-
3
-
-
0027318317
-
An empirical energy function for threading protein sequence through folding motif
-
Bryant, S. H. & Lawrence, C. E. (1993). An empirical energy function for threading protein sequence through folding motif. Proteins: Struct. Funct. Genet. 16, 92-112.
-
(1993)
Proteins: Struct. Funct. Genet.
, vol.16
, pp. 92-112
-
-
Bryant, S.H.1
Lawrence, C.E.2
-
4
-
-
0028786978
-
The use of side-chain packing methods in modeling bacteriophage repressor and cro proteins
-
Chung, S. Y. & Subbia, S. (1995). The use of side-chain packing methods in modeling bacteriophage repressor and cro proteins. Protein Sci. 4, 2300-2309.
-
(1995)
Protein Sci.
, vol.4
, pp. 2300-2309
-
-
Chung, S.Y.1
Subbia, S.2
-
5
-
-
0030310218
-
How similar must a template protein be for homology modeling by side-chain packing methods?
-
(Hunter, L. & Klein, T. E., eds), World Scientific, New Jersey
-
Chung, S. Y. & Subbiah, S. (1996). How similar must a template protein be for homology modeling by side-chain packing methods? In Proceedings of the Pacific Symposium on Biocomputing, Hawaii, USA (Hunter, L. & Klein, T. E., eds), pp. 126-141, World Scientific, New Jersey
-
(1996)
Proceedings of the Pacific Symposium on Biocomputing, Hawaii, USA
, pp. 126-141
-
-
Chung, S.Y.1
Subbiah, S.2
-
6
-
-
0026589733
-
The dead-end elimination theorem and its use in protein side-chain positioning
-
Desmet, J., De Maeyer, M., Hazes, B. & Lasters, I. (1992). The dead-end elimination theorem and its use in protein side-chain positioning. Nature, 356, 539-542.
-
(1992)
Nature
, vol.356
, pp. 539-542
-
-
Desmet, J.1
De Maeyer, M.2
Hazes, B.3
Lasters, I.4
-
7
-
-
0028929556
-
Principles of protein folding - A perspective from simple exact models
-
Dill, K. A., Bromberg, S., Yue, K., Fiebig, K. M., Yee, D. P., Thomas, P. D. & Chan, H. S. (1995). Principles of protein folding - a perspective from simple exact models. Protein Sci. 4, 561-602.
-
(1995)
Protein Sci.
, vol.4
, pp. 561-602
-
-
Dill, K.A.1
Bromberg, S.2
Yue, K.3
Fiebig, K.M.4
Yee, D.P.5
Thomas, P.D.6
Chan, H.S.7
-
8
-
-
0027160197
-
Backbone-dependent rotamer library for proteins: Application to side-chain prediction
-
Dunbrack, R. L., Jr & Karplus, M. (1993). Backbone-dependent rotamer library for proteins: application to side-chain prediction. J. Mol. Biol. 230, 543-574.
-
(1993)
J. Mol. Biol.
, vol.230
, pp. 543-574
-
-
Dunbrack R.L., Jr.1
Karplus, M.2
-
9
-
-
0022596727
-
Solvation energy in protein folding and binding
-
Eisenberg, D. & McLachlan, A. D. (1986). Solvation energy in protein folding and binding. Nature, 319, 199-203.
-
(1986)
Nature
, vol.319
, pp. 199-203
-
-
Eisenberg, D.1
McLachlan, A.D.2
-
10
-
-
0027185404
-
A method to configure protein side-chains from the main-chain trace in homology modelling
-
Eisenmenger, F., Argos, P. & Abagyan, R. (1993). A method to configure protein side-chains from the main-chain trace in homology modelling. J. Mol. Biol. 231, 849-860.
-
(1993)
J. Mol. Biol.
, vol.231
, pp. 849-860
-
-
Eisenmenger, F.1
Argos, P.2
Abagyan, R.3
-
11
-
-
0025008445
-
Identification of native protein folds amongst a large number of incorrect models. The calculation of low energy conformations from potentials of mean force
-
Hendlich, M., Lackner, P., Weitckus, S., Floeckner, H., Froschauer, R., Gottsbacher, K., Casari, G. & Sippl, M. J. (1990). Identification of native protein folds amongst a large number of incorrect models. The calculation of low energy conformations from potentials of mean force. J. Mol. Biol. 216, 167-180.
-
(1990)
J. Mol. Biol.
, vol.216
, pp. 167-180
-
-
Hendlich, M.1
Lackner, P.2
Weitckus, S.3
Floeckner, H.4
Froschauer, R.5
Gottsbacher, K.6
Casari, G.7
Sippl, M.J.8
-
12
-
-
0025978283
-
α trace: Application to model building and detection of coordinate errors
-
α trace: application to model building and detection of coordinate errors. J. Mol. Biol. 218, 183-194.
-
(1991)
J. Mol. Biol.
, vol.218
, pp. 183-194
-
-
Holm, L.1
Sander, C.2
-
13
-
-
0029101826
-
Recognizing native folds by the arrangement of hydrophobic and polar residues
-
Huang, E. S., Subbiah, S. & Levitt, M. (1995). Recognizing native folds by the arrangement of hydrophobic and polar residues. J. Mol. Biol. 252, 709-720.
-
(1995)
J. Mol. Biol.
, vol.252
, pp. 709-720
-
-
Huang, E.S.1
Subbiah, S.2
Levitt, M.3
-
14
-
-
12944249776
-
A discussion of the solution for the best rotation to relate two sets of vectors
-
Kabsch, W. (1978). A discussion of the solution for the best rotation to relate two sets of vectors. Acta Crystallog. sect. A, 34, 827-828.
-
(1978)
Acta Crystallog. Sect. A
, vol.34
, pp. 827-828
-
-
Kabsch, W.1
-
15
-
-
23444436172
-
Protein design by binary patterning of polar and nonpolar amino acids
-
Kamtekar, S., Schiffer, J. M., Xiong, H., Babik, J. M. & Hecht, M. H. (1993). Protein design by binary patterning of polar and nonpolar amino acids. Science, 262, 1680-1685.
-
(1993)
Science
, vol.262
, pp. 1680-1685
-
-
Kamtekar, S.1
Schiffer, J.M.2
Xiong, H.3
Babik, J.M.4
Hecht, M.H.5
-
16
-
-
0009979659
-
Precise representation of volume properties of water at one atmosphere
-
Kell, G. S. (1967). Precise representation of volume properties of water at one atmosphere. J. Chem. Eng. Data, 12, 66-69.
-
(1967)
J. Chem. Eng. Data
, vol.12
, pp. 66-69
-
-
Kell, G.S.1
-
17
-
-
0028318094
-
Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches
-
Kocher, J.-P. A., Rooman, M. J. & Wodak, S. J. (1994). Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches. J. Mol. Biol. 235, 1598-1613.
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 1598-1613
-
-
Kocher, J.-P.A.1
Rooman, M.J.2
Wodak, S.J.3
-
18
-
-
0028343413
-
Application of a self-consistent mean field theory to predict protein side-chains conformation and estimate their conformational entropy
-
Koehl, P. & Delarue, M. (1994a). Application of a self-consistent mean field theory to predict protein side-chains conformation and estimate their conformational entropy. J. Mol. Biol. 239, 249-275.
-
(1994)
J. Mol. Biol.
, vol.239
, pp. 249-275
-
-
Koehl, P.1
Delarue, M.2
-
19
-
-
0028063257
-
Polar and nonpolar atomic environments in the protein core: Implications for folding and binding
-
Koehl, P. & Delarue, M. (1994b). Polar and nonpolar atomic environments in the protein core: implications for folding and binding. Proteins: Struct. Funct. Genet. 20, 264-278.
-
(1994)
Proteins: Struct. Funct. Genet.
, vol.20
, pp. 264-278
-
-
Koehl, P.1
Delarue, M.2
-
20
-
-
0028223845
-
Predicting protein mutant energetics by self-consistent ensemble optimization
-
Lee, C. (1994). Predicting protein mutant energetics by self-consistent ensemble optimization. J. Mol. Biol. 236, 918-939.
-
(1994)
J. Mol. Biol.
, vol.236
, pp. 918-939
-
-
Lee, C.1
-
21
-
-
0026019108
-
Prediction of protein side-chain conformation by packing optimization
-
Lee, C. & Subbiah, S. (1991). Prediction of protein side-chain conformation by packing optimization. J. Mol. Biol. 217, 373-388.
-
(1991)
J. Mol. Biol.
, vol.217
, pp. 373-388
-
-
Lee, C.1
Subbiah, S.2
-
22
-
-
0021104775
-
Molecular dynamics of native proteins. I. Computer simulation of trajectories
-
Levitt, M. (1983). Molecular dynamics of native proteins. I. Computer simulation of trajectories. J. Mol. Biol. 168, 595-620.
-
(1983)
J. Mol. Biol.
, vol.168
, pp. 595-620
-
-
Levitt, M.1
-
23
-
-
0029633167
-
Potential energy function and parameters for simulations of the molecular dynamics of proteins and nucleic acids in solution
-
Levitt, M., Hirschberg, M., Sharon, R. & Daggett, V. (1995). Potential energy function and parameters for simulations of the molecular dynamics of proteins and nucleic acids in solution. Comp. Phys. Commun. 91, 215-231.
-
(1995)
Comp. Phys. Commun.
, vol.91
, pp. 215-231
-
-
Levitt, M.1
Hirschberg, M.2
Sharon, R.3
Daggett, V.4
-
24
-
-
0026785519
-
Contact potential that recognizes the correct folding of globular proteins
-
Maiorov, V. N. & Crippen, G. M. (1992). Contact potential that recognizes the correct folding of globular proteins. J. Mol. Biol. 227, 876-888.
-
(1992)
J. Mol. Biol.
, vol.227
, pp. 876-888
-
-
Maiorov, V.N.1
Crippen, G.M.2
-
25
-
-
0028033123
-
Learning about protein folding via potential functions
-
Maiorov, V. N. & Crippen, G. M. (1994). Learning about protein folding via potential functions. Proteins: Struct. Funct. Genet. 20, 167-173.
-
(1994)
Proteins: Struct. Funct. Genet.
, vol.20
, pp. 167-173
-
-
Maiorov, V.N.1
Crippen, G.M.2
-
26
-
-
0028897718
-
Computer modeling of protein folding: Conformational and energy analysis of reduced and detailed protein models
-
Monge, A., Lathrop, E. J. P., Gunn, J. R., Shenkin, P. S. & Friesner, R. A. (1995). Computer modeling of protein folding: conformational and energy analysis of reduced and detailed protein models. J. Mol. Biol. 247, 995-1012.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 995-1012
-
-
Monge, A.1
Lathrop, E.J.P.2
Gunn, J.R.3
Shenkin, P.S.4
Friesner, R.A.5
-
27
-
-
0029063717
-
The complexity and accuracy of discrete state models of protein structure
-
Park, B. & Levitt, M. (1995). The complexity and accuracy of discrete state models of protein structure. J. Mol. Biol. 249, 493-507.
-
(1995)
J. Mol. Biol.
, vol.249
, pp. 493-507
-
-
Park, B.1
Levitt, M.2
-
28
-
-
0029000696
-
Knowledge-based potentials for proteins
-
Sippl, M. J. (1995). Knowledge-based potentials for proteins. Curr. Opin. Struct. Biol. 5, 229-235.
-
(1995)
Curr. Opin. Struct. Biol.
, vol.5
, pp. 229-235
-
-
Sippl, M.J.1
-
29
-
-
0028598623
-
Determinants of protein side-chain packing
-
Tanimura, R., Kidera, A. & Nakamura, H. (1994). Determinants of protein side-chain packing. Protein Sci. 3, 2358-2365.
-
(1994)
Protein Sci.
, vol.3
, pp. 2358-2365
-
-
Tanimura, R.1
Kidera, A.2
Nakamura, H.3
-
30
-
-
0026179489
-
A new approach to the rapid determination of protein side-chain conformations
-
Tuffery P., Etchebest, C., Hazout, S. & Lavery R. (1991). A new approach to the rapid determination of protein side-chain conformations. J. Biomol. Struct. Dynam. 8, 1267-1289.
-
(1991)
J. Biomol. Struct. Dynam.
, vol.8
, pp. 1267-1289
-
-
Tuffery, P.1
Etchebest, C.2
Hazout, S.3
Lavery, R.4
-
31
-
-
0026076082
-
Empirical solvation models can be used to differentiate native from near-native conformations of bovine pancreatic trypsin inhibitor
-
Vila, J., Williams, R. L., Vásquez, M. & Scheraga, H. A. (1991). Empirical solvation models can be used to differentiate native from near-native conformations of bovine pancreatic trypsin inhibitor. Proteins: Struct. Funct. Genet. 10, 199-218.
-
(1991)
Proteins: Struct. Funct. Genet.
, vol.10
, pp. 199-218
-
-
Vila, J.1
Williams, R.L.2
Vásquez, M.3
Scheraga, H.A.4
-
32
-
-
0028895567
-
Discriminating compact nonnative structures from the native structure of globular proteins
-
Wang, Y., Zhang, H., Li, W. & Scott, R. A. (1995a). Discriminating compact nonnative structures from the native structure of globular proteins. Proc. Natl Acad. Sci. USA, 92, 709-713.
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 709-713
-
-
Wang, Y.1
Zhang, H.2
Li, W.3
Scott, R.A.4
-
33
-
-
0029077858
-
A new computational model for protein folding based on atomic solvation
-
Wang, Y., Zhang, H. & Scott, R. A. (1995b). A new computational model for protein folding based on atomic solvation. Protein Sci. 4, 1402-1411.
-
(1995)
Protein Sci.
, vol.4
, pp. 1402-1411
-
-
Wang, Y.1
Zhang, H.2
Scott, R.A.3
-
34
-
-
0027480460
-
Modeling side-chain conformation for homologous proteins using an energy-based rotamer search
-
Wilson, C., Gregoret, L. M. & Agard, D. A. (1993). Modeling side-chain conformation for homologous proteins using an energy-based rotamer search. J. Mol. Biol. 229, 996-1006.
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 996-1006
-
-
Wilson, C.1
Gregoret, L.M.2
Agard, D.A.3
|