-
1
-
-
0028950075
-
Forces of tertiary structural organization of globular proteins
-
Yue, K. & Dill, K. A. (1995) Forces of tertiary structural organization of globular proteins, Proc. Natl Acad. Sci. USA 92, 146-150.
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 146-150
-
-
Yue, K.1
Dill, K.A.2
-
2
-
-
0030048675
-
Folding proteins with a simple energy function and extensive conformational searching
-
Yue, K. & Dill, K. A. (1996) Folding proteins with a simple energy function and extensive conformational searching, Protein Sci. 5, 254-261.
-
(1996)
Protein Sci.
, vol.5
, pp. 254-261
-
-
Yue, K.1
Dill, K.A.2
-
3
-
-
0029912991
-
Global optimum protein threading with gapped alignment and empirical pair score functions
-
Lathrop, R. H. & Smith, T. F. (1996) Global optimum protein threading with gapped alignment and empirical pair score functions, J. Mol. Biol. 255, 641-655.
-
(1996)
J. Mol. Biol.
, vol.255
, pp. 641-655
-
-
Lathrop, R.H.1
Smith, T.F.2
-
4
-
-
0025008445
-
Identification of native protein folds amongst a large number of incorrect models. The calculation of low energy conformations from potentials of mean force
-
Hendlich, M., Lackner, P., Weitckus, S., Floeckner, H., Forschauer, R., Gottsbacher, K., Casari, G. & Sippl, M. J. (1990) Identification of native protein folds amongst a large number of incorrect models. The calculation of low energy conformations from potentials of mean force, J. Mol. Biol. 216, 167-180.
-
(1990)
J. Mol. Biol.
, vol.216
, pp. 167-180
-
-
Hendlich, M.1
Lackner, P.2
Weitckus, S.3
Floeckner, H.4
Forschauer, R.5
Gottsbacher, K.6
Casari, G.7
Sippl, M.J.8
-
5
-
-
0028818340
-
Protein structure prediction by threading methods: Evaluation of current techniques
-
Lemer, C. M. R., Rooman, M. J. & Wodak, S. J. (1995) Protein structure prediction by threading methods: evaluation of current techniques, Proteins 23, 337-355.
-
(1995)
Proteins
, vol.23
, pp. 337-355
-
-
Lemer, C.M.R.1
Rooman, M.J.2
Wodak, S.J.3
-
6
-
-
0004702255
-
Model of protein folding: Inclusion of short-, medium-, and long-range interactions
-
Tanaka, S. & Scheraga, H. A. (1975) Model of protein folding: inclusion of short-, medium-, and long-range interactions, Proc. Natl Acad. Sci. USA 72, 3802-3806.
-
(1975)
Proc. Natl Acad. Sci. USA
, vol.72
, pp. 3802-3806
-
-
Tanaka, S.1
Scheraga, H.A.2
-
7
-
-
0028849882
-
Evaluation of current techniques for ab initio structure prediction
-
Defay, T. & Cohen, F. E. (1995) Evaluation of current techniques for ab initio structure prediction. Proteins 23, 431-445.
-
(1995)
Proteins
, vol.23
, pp. 431-445
-
-
Defay, T.1
Cohen, F.E.2
-
8
-
-
0028568650
-
Intrinsic secondary structure propensities of the amino acids, using statistical ΦΨ matrices: Comparison with experimental data
-
Muñoz, V. & Serrano, L. (1994) Intrinsic secondary structure propensities of the amino acids, using statistical ΦΨ matrices: comparison with experimental data. Proteins Struct. Fund. Genet. 20, 301-311.
-
(1994)
Proteins Struct. Fund. Genet.
, vol.20
, pp. 301-311
-
-
Muñoz, V.1
Serrano, L.2
-
9
-
-
0028075953
-
Protein stability for single substitution mutants and the extent of local compactness in the denatured state
-
Miyazawa, S. & Jernigan, R. L. (1994) Protein stability for single substitution mutants and the extent of local compactness in the denatured state. Protein Eng. 7, 1209-1220.
-
(1994)
Protein Eng.
, vol.7
, pp. 1209-1220
-
-
Miyazawa, S.1
Jernigan, R.L.2
-
10
-
-
0029873155
-
Stability changes upon mutation of solvent-accessible residues in proteins evaluated by database-derived potentials
-
Gilis, D. & Rooman, M. (1996) Stability changes upon mutation of solvent-accessible residues in proteins evaluated by database-derived potentials. J. Mol. Biol. 257, 1112- 1126.
-
(1996)
J. Mol. Biol.
, vol.257
, pp. 1112-1126
-
-
Gilis, D.1
Rooman, M.2
-
11
-
-
0030777760
-
Predicting protein stability changes upon mutation using database-derived potentials. Solvent accessibility determines the importance of local versus non-local interactions along the sequence
-
Gilis, D. & Rooman, M. (1997) Predicting protein stability changes upon mutation using database-derived potentials. Solvent accessibility determines the importance of local versus non-local interactions along the sequence, J. Mol. Biol. 272, 276-290.
-
(1997)
J. Mol. Biol.
, vol.272
, pp. 276-290
-
-
Gilis, D.1
Rooman, M.2
-
12
-
-
0025851973
-
Prediction of protein folding from amino acid sequence over discrete conformations spaces
-
Crippen, G. M. (1991) Prediction of protein folding from amino acid sequence over discrete conformations spaces. Biochemistry 30, 4232-4237.
-
(1991)
Biochemistry
, vol.30
, pp. 4232-4237
-
-
Crippen, G.M.1
-
13
-
-
0026785519
-
Contact potential that recognizes the correct folding of globular proteins
-
Maiorov, V. N. & Crippen, G. M. (1992) Contact potential that recognizes the correct folding of globular proteins. J. Mol. Biol. 227, 876-888.
-
(1992)
J. Mol. Biol.
, vol.227
, pp. 876-888
-
-
Maiorov, V.N.1
Crippen, G.M.2
-
14
-
-
0030596063
-
How to derive a protein folding potential? A new approach to an old problem
-
Mirny, L. A. & Shakhnovich, E. I. (1996) How to derive a protein folding potential? A new approach to an old problem, J. Mol. Biol. 264, 1164-1179.
-
(1996)
J. Mol. Biol.
, vol.264
, pp. 1164-1179
-
-
Mirny, L.A.1
Shakhnovich, E.I.2
-
15
-
-
33845377127
-
Estimation of effective interresidue contact energies from protein crystal structures
-
Miyazawa, S. & Jernigan, R. L. (1985) Estimation of effective interresidue contact energies from protein crystal structures, Macromolecules 18, 534-552.
-
(1985)
Macromolecules
, vol.18
, pp. 534-552
-
-
Miyazawa, S.1
Jernigan, R.L.2
-
16
-
-
0027050011
-
Sequence structure matching in globular proteins: Application to supersecondary and tertiary structure prediction
-
Godzik, A. & Skolnick, J. (1992) Sequence structure matching in globular proteins: application to supersecondary and tertiary structure prediction, Proc. Natl Acad. Sci. USA 89, 12098-12102.
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, pp. 12098-12102
-
-
Godzik, A.1
Skolnick, J.2
-
17
-
-
0025341310
-
Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge based prediction of local structures in globular proteins
-
Sippl, M. J. (1990) Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge based prediction of local structures in globular proteins. J. Mol. Biol. 213, 859-883.
-
(1990)
J. Mol. Biol.
, vol.213
, pp. 859-883
-
-
Sippl, M.J.1
-
18
-
-
0028318094
-
Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches
-
Kocher, J.-P. A., Rooman, M. J. & Wodak, S. J. (1994) Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches, J. Mol. Biol. 235, 1598-1613.
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 1598-1613
-
-
Kocher, J.-P.A.1
Rooman, M.J.2
Wodak, S.J.3
-
19
-
-
0025830469
-
A method to identify protein sequences that fold into a known three-dimensional structure
-
Bowie, J. U., Lüthy, R. & Eisenberg, D. (1991) A method to identify protein sequences that fold into a known three-dimensional structure, Science 253, 164-170.
-
(1991)
Science
, vol.253
, pp. 164-170
-
-
Bowie, J.U.1
Lüthy, R.2
Eisenberg, D.3
-
20
-
-
0026009212
-
Prediction of protein backbone conformation based on 7 structure assignments: Influence of local interactions
-
Rooman, M. J., Kocher, J.-P. A. & Wodak, S. J. (1991) Prediction of protein backbone conformation based on 7 structure assignments: influence of local interactions, J. Mol. Biol. 221, 961-979.
-
(1991)
J. Mol. Biol.
, vol.221
, pp. 961-979
-
-
Rooman, M.J.1
Kocher, J.-P.A.2
Wodak, S.J.3
-
21
-
-
0027407722
-
Estimation and use of protein backbone angle probabilities
-
Kang, H. S., Kurochkina, N. A. & Lee, B. (1993) Estimation and use of protein backbone angle probabilities, J. Mol. Biol. 229, 448-460.
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 448-460
-
-
Kang, H.S.1
Kurochkina, N.A.2
Lee, B.3
-
22
-
-
0029563695
-
Are database-derived potentials valid for scoring both forward and inverted protein folding
-
Rooman, M. J. & Wodak, S. J. (1995) Are database-derived potentials valid for scoring both forward and inverted protein folding, Protein Eng. 8, 849-858.
-
(1995)
Protein Eng.
, vol.8
, pp. 849-858
-
-
Rooman, M.J.1
Wodak, S.J.2
-
23
-
-
0028892389
-
Are proteins ideal mixtures of amino acids? Analysis of energy parameter sets
-
Godzik, A., Kolinski, A. & Skolnick, J. (1995) Are proteins ideal mixtures of amino acids? Analysis of energy parameter sets. Protein Sci. 4, 2107-2117.
-
(1995)
Protein Sci.
, vol.4
, pp. 2107-2117
-
-
Godzik, A.1
Kolinski, A.2
Skolnick, J.3
-
24
-
-
0030983768
-
Derivation and testing of pair potentials for protein folding. When is the quasichemical approximation correct
-
Skolnick, J., Jaroszewski, L., Kolinski, A. & Godzik, A. (1997) Derivation and testing of pair potentials for protein folding. When is the quasichemical approximation correct, Protein Sci. 6, 676-688.
-
(1997)
Protein Sci.
, vol.6
, pp. 676-688
-
-
Skolnick, J.1
Jaroszewski, L.2
Kolinski, A.3
Godzik, A.4
-
25
-
-
0029976427
-
Statistical potentials extracted from protein structures: How accurate are they
-
Thomas, P. D. & Dill, K. A. (1996) Statistical potentials extracted from protein structures: how accurate are they, J. Mol. Biol. 257, 457-469.
-
(1996)
J. Mol. Biol.
, vol.257
, pp. 457-469
-
-
Thomas, P.D.1
Dill, K.A.2
-
26
-
-
0031566950
-
Inter-residue potentials in globular proteins and the dominance of highly specific hydrophilic interactions at close separation
-
Bahar, I. & Jernigan, R. L. (1997) Inter-residue potentials in globular proteins and the dominance of highly specific hydrophilic interactions at close separation, J. Mol. Biol. 266, 195-214.
-
(1997)
J. Mol. Biol.
, vol.266
, pp. 195-214
-
-
Bahar, I.1
Jernigan, R.L.2
-
27
-
-
0015244817
-
Empirical protein energy maps
-
Pohl, F. M. (1971) Empirical protein energy maps. Nature 237, 277-279.
-
(1971)
Nature
, vol.237
, pp. 277-279
-
-
Pohl, F.M.1
-
28
-
-
0017411710
-
The protein data bank: A computer-based archival file for macromolecular structures
-
Bernstein, F. C., Koetzle, T. F., Williams, G. J. B., Meywe, E. F. Jr. Brice, M. D., Rodgers, J. R., Kennard, O., Shimanoushi, T. & Tasumi, M. (1977) The protein data bank: a computer-based archival file for macromolecular structures. J. Mol. Biol. 112, 535-542.
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.B.3
Meywe Jr., E.F.4
Brice, M.D.5
Rodgers, J.R.6
Kennard, O.7
Shimanoushi, T.8
Tasumi, M.9
-
29
-
-
0027092678
-
Selection of a representative set of structures from the Brookhaven Protein Data Bank
-
Hobohm, U., Scharf, M., Schneider, R. & Sander, C. (1992) Selection of a representative set of structures from the Brookhaven Protein Data Bank, Protein Sci. 1, 409-417.
-
(1992)
Protein Sci.
, vol.1
, pp. 409-417
-
-
Hobohm, U.1
Scharf, M.2
Schneider, R.3
Sander, C.4
-
30
-
-
0028205447
-
Enlarged representative set of protein structures
-
Hobohm, U. & Sander, C. (1994) Enlarged representative set of protein structures, Protein Sci. 3, 522-524.
-
(1994)
Protein Sci.
, vol.3
, pp. 522-524
-
-
Hobohm, U.1
Sander, C.2
-
31
-
-
0001093159
-
Mutational analysis of protein stability
-
Matthews, B. W. (1991) Mutational analysis of protein stability. Curr. Opin. Struct. Biol. 1, 17-21.
-
(1991)
Curr. Opin. Struct. Biol.
, vol.1
, pp. 17-21
-
-
Matthews, B.W.1
-
32
-
-
0029863769
-
Automatic classification and analysis of αα-turn motifs in proteins
-
Wintjens, R. T., Rooman, M. J. & Wodak, S. J. (1996) Automatic classification and analysis of αα-turn motifs in proteins. J. Mol. Biol. 255, 235-253.
-
(1996)
J. Mol. Biol.
, vol.255
, pp. 235-253
-
-
Wintjens, R.T.1
Rooman, M.J.2
Wodak, S.J.3
-
34
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch, W. & Sander, C. (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features, Biopolymers 22, 2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
|