메뉴 건너뛰기




Volumn 32, Issue 7, 2000, Pages 695-702

A large 'footprint' at the boundary of the human β-globin locus control region hypersensitive site-2

Author keywords

Bleomycin; Chromatin structure; Hedamycin; Ligation mediated PCR; Nucleosome

Indexed keywords

BETA GLOBIN; BLEOMYCIN; HEDAMYCIN;

EID: 0034237182     PISSN: 13572725     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1357-2725(00)00023-6     Document Type: Article
Times cited : (12)

References (45)
  • 2
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2.8 Å resolution
    • Luger K., Mäder A.W., Richmond R.K., Sargent D.F., Richmond T.J. Crystal structure of the nucleosome core particle at 2.8 Å resolution. Nature. 389:1997;251-260.
    • (1997) Nature , vol.389 , pp. 251-260
    • Luger, K.1    Mäder, A.W.2    Richmond, R.K.3    Sargent, D.F.4    Richmond, T.J.5
  • 3
    • 0024263822 scopus 로고
    • The formation and function of DNase I hypersensitive sites in the process of gene activation
    • Elgin S.C.R. The formation and function of DNase I hypersensitive sites in the process of gene activation. J. Biol. Chem. 263:1988;19259-19262.
    • (1988) J. Biol. Chem. , vol.263 , pp. 19259-19262
    • Elgin, S.C.R.1
  • 4
    • 0023899769 scopus 로고
    • Nuclease hypersensitive sites in chromatin
    • Gross D.S., Garrard W.T. Nuclease hypersensitive sites in chromatin. Ann. Rev. Biochem. 57:1988;159-197.
    • (1988) Ann. Rev. Biochem. , vol.57 , pp. 159-197
    • Gross, D.S.1    Garrard, W.T.2
  • 5
    • 0342936465 scopus 로고    scopus 로고
    • Regulation of gene expression by nucleosomes
    • Svaren J., Horz W. Regulation of gene expression by nucleosomes. Curr. Opin. Genet. Develop. 6:1996;164-170.
    • (1996) Curr. Opin. Genet. Develop. , vol.6 , pp. 164-170
    • Svaren, J.1    Horz, W.2
  • 6
    • 0030964249 scopus 로고    scopus 로고
    • Nucleosome mobility and the maintenance of nucleosome positioning
    • Pazin M.J., Bhargava P., Geiduschek E., Kadonaga J.T. Nucleosome mobility and the maintenance of nucleosome positioning. Science. 276:1997;809-812.
    • (1997) Science , vol.276 , pp. 809-812
    • Pazin, M.J.1    Bhargava, P.2    Geiduschek, E.3    Kadonaga, J.T.4
  • 7
    • 0029914495 scopus 로고    scopus 로고
    • Multiple SWIches to turn on chromatin?
    • Peterson C.L. Multiple SWIches to turn on chromatin? Curr. Opin. Genet. Develop. 6:1996;171-175.
    • (1996) Curr. Opin. Genet. Develop. , vol.6 , pp. 171-175
    • Peterson, C.L.1
  • 8
    • 0029997378 scopus 로고    scopus 로고
    • Targeting chromatin disruption: Transcription regulators that acetylate histones
    • Wolffe A.P., Pruss D. Targeting chromatin disruption: Transcription regulators that acetylate histones. Cell. 84:1996;817-819.
    • (1996) Cell , vol.84 , pp. 817-819
    • Wolffe, A.P.1    Pruss, D.2
  • 9
    • 0031012552 scopus 로고    scopus 로고
    • Opening the way to gene activity
    • Pennisi E. Opening the way to gene activity. Science. 275:1997;155-157.
    • (1997) Science , vol.275 , pp. 155-157
    • Pennisi, E.1
  • 10
    • 0022799341 scopus 로고
    • Nuclease hypersensitive regions with adjacent positioned nucleosomes mark the gene boundaries of the PHO5/PHO3 locus in yeast
    • Almer A., Horz W. Nuclease hypersensitive regions with adjacent positioned nucleosomes mark the gene boundaries of the PHO5/PHO3 locus in yeast. EMBO J. 5:1986;2681-2687.
    • (1986) EMBO J. , vol.5 , pp. 2681-2687
    • Almer, A.1    Horz, W.2
  • 11
    • 0022500773 scopus 로고
    • Nucleosomes are phased along the mouse β-major globin gene in erythroid and nonerythroid cells
    • Benezra R., Cantor C.R., Axe R. Nucleosomes are phased along the mouse β-major globin gene in erythroid and nonerythroid cells. Cell. 44:1986;697-704.
    • (1986) Cell , vol.44 , pp. 697-704
    • Benezra, R.1    Cantor, C.R.2    Axe, R.3
  • 12
    • 1842314454 scopus 로고
    • Sequence-specific positioning of nucleosomes over the steroid inducible MMTV promoter
    • Richard-Foy H., Hager G.L. Sequence-specific positioning of nucleosomes over the steroid inducible MMTV promoter. EMBO J. 6:1987;2321-2328.
    • (1987) EMBO J. , vol.6 , pp. 2321-2328
    • Richard-Foy, H.1    Hager, G.L.2
  • 13
    • 0024042734 scopus 로고
    • Protein/DNA architecture of the DNase I hypersensitive region of the Drosophila hsp26 promoter
    • Thomas G.H., Elgin S.C.R. Protein/DNA architecture of the DNase I hypersensitive region of the Drosophila hsp26 promoter. EMBO J. 7:1988;2191-2201.
    • (1988) EMBO J. , vol.7 , pp. 2191-2201
    • Thomas, G.H.1    Elgin, S.C.R.2
  • 14
    • 0027507894 scopus 로고
    • An active tissue-specific enhancer and bound transcription factors existing in a precisely positioned nucleosomal array
    • McPherson C.E., Shim E.-Y., Friedman D.S., Zaret K.S. An active tissue-specific enhancer and bound transcription factors existing in a precisely positioned nucleosomal array. Cell. 75:1993;387-398.
    • (1993) Cell , vol.75 , pp. 387-398
    • McPherson, C.E.1    Shim, E.-Y.2    Friedman, D.S.3    Zaret, K.S.4
  • 15
    • 0029914504 scopus 로고    scopus 로고
    • Pituitary-specific chromatin structure of the rat prolactin distal enhancer element
    • Willis S.D., Seyfred M.A. Pituitary-specific chromatin structure of the rat prolactin distal enhancer element. Nucl. Acids Res. 24:1996;1065-1072.
    • (1996) Nucl. Acids Res. , vol.24 , pp. 1065-1072
    • Willis, S.D.1    Seyfred, M.A.2
  • 16
    • 0030725367 scopus 로고    scopus 로고
    • Nucleosome positioning and transcription-associated chromatin alterations on the human estrogen-responsive pS2 promoter
    • Sewack G., Hansen U. Nucleosome positioning and transcription-associated chromatin alterations on the human estrogen-responsive pS2 promoter. J. Biol. Chem. 272:1997;31118-31129.
    • (1997) J. Biol. Chem. , vol.272 , pp. 31118-31129
    • Sewack, G.1    Hansen, U.2
  • 18
    • 0023091410 scopus 로고
    • DNA sequence-directed nucleosome reconstitution on 5 S RNA gene of Xenopus laevis
    • Gottesfeld J.M. DNA sequence-directed nucleosome reconstitution on 5 S RNA gene of Xenopus laevis. Molec. Cell. Biol. 7:1987;1612-1622.
    • (1987) Molec. Cell. Biol. , vol.7 , pp. 1612-1622
    • Gottesfeld, J.M.1
  • 20
    • 0027235826 scopus 로고
    • Evidence that the transcription factor USF is a component of the human β-globin locus control region heteromeric protein complex
    • Bresnick E.H., Felsenfeld G. Evidence that the transcription factor USF is a component of the human β-globin locus control region heteromeric protein complex. J. Biol. Chem. 268:1993;18824-18834.
    • (1993) J. Biol. Chem. , vol.268 , pp. 18824-18834
    • Bresnick, E.H.1    Felsenfeld, G.2
  • 21
    • 0025365230 scopus 로고
    • Detailed analysis of the site 3 region of the human β-globin dominant control region
    • Talbot D., Philipsen S., Fraser P., Grosveld F. Detailed analysis of the site 3 region of the human β-globin dominant control region. EMBO J. 9:1990;2169-2178.
    • (1990) EMBO J. , vol.9 , pp. 2169-2178
    • Talbot, D.1    Philipsen, S.2    Fraser, P.3    Grosveld, F.4
  • 22
    • 0023053638 scopus 로고
    • Protein-DNA interactions and nuclease-sensitive regions determine nucleosome positions on yeast plasmid chromatin
    • Thoma F. Protein-DNA interactions and nuclease-sensitive regions determine nucleosome positions on yeast plasmid chromatin. J. Molec. Biol. 190:1986;177-190.
    • (1986) J. Molec. Biol. , vol.190 , pp. 177-190
    • Thoma, F.1
  • 23
    • 0023089385 scopus 로고
    • Sharp boundaries demarcate the chromatin structure of a yeast heat-shock gene
    • Szent-Gyorgyi C., Finkelstein D.B., Garrard W.T. Sharp boundaries demarcate the chromatin structure of a yeast heat-shock gene. J. Molec. Biol. 193:1987;71-80.
    • (1987) J. Molec. Biol. , vol.193 , pp. 71-80
    • Szent-Gyorgyi, C.1    Finkelstein, D.B.2    Garrard, W.T.3
  • 24
    • 0020480457 scopus 로고
    • Formation of alkali labile linkages in DNA by hedamycin and use of hedamycin as a probe of protein-DNA complexes
    • Bennett G.N. Formation of alkali labile linkages in DNA by hedamycin and use of hedamycin as a probe of protein-DNA complexes. Nucl. Acids Res. 10:1982;4581-4594.
    • (1982) Nucl. Acids Res. , vol.10 , pp. 4581-4594
    • Bennett, G.N.1
  • 25
    • 0029931583 scopus 로고    scopus 로고
    • Influence of chromatin structure on bleomycin-DNA interactions at base pair resolution in the human β-globin gene cluster
    • Cairns M.J., Murray V. Influence of chromatin structure on bleomycin-DNA interactions at base pair resolution in the human β-globin gene cluster. Biochemistry. 35:1996;8753-8760.
    • (1996) Biochemistry , vol.35 , pp. 8753-8760
    • Cairns, M.J.1    Murray, V.2
  • 26
    • 0031957190 scopus 로고    scopus 로고
    • The detection of protein-DNA interactions at the β-globin gene cluster in intact human cells utilising hedamycin as a DNA damaging agent
    • Cairns M.J., Murray V. The detection of protein-DNA interactions at the β-globin gene cluster in intact human cells utilising hedamycin as a DNA damaging agent. DNA Cell Biol. 17:1998;325-333.
    • (1998) DNA Cell Biol. , vol.17 , pp. 325-333
    • Cairns, M.J.1    Murray, V.2
  • 27
    • 0017927707 scopus 로고
    • Bleomycin causes release of nucleosomes from chromatin and chromosomes
    • Kuo M.T., Hsu T.C. Bleomycin causes release of nucleosomes from chromatin and chromosomes. Nature. 271:1978;83-84.
    • (1978) Nature , vol.271 , pp. 83-84
    • Kuo, M.T.1    Hsu, T.C.2
  • 28
    • 0018134389 scopus 로고
    • Binding of hedamycin to deoxyribonucleic acid and chromatin of testis and liver
    • Jernigan H.M. Jr, Irvin J.L., White J.R. Binding of hedamycin to deoxyribonucleic acid and chromatin of testis and liver. Biochemistry. 17:1978;4232-4239.
    • (1978) Biochemistry , vol.17 , pp. 4232-4239
    • Jernigan H.M., Jr.1    Irvin, J.L.2    White, J.R.3
  • 29
    • 0028904963 scopus 로고
    • The interaction of hedamycin and DC92-B in a sequence selective manner with DNA in intact human cells
    • Murray V., Moore A.G., Matias C., Wickham G. The interaction of hedamycin and DC92-B in a sequence selective manner with DNA in intact human cells. Biochim. Biophys. Acta. 1261:1995;195-200.
    • (1995) Biochim. Biophys. Acta , vol.1261 , pp. 195-200
    • Murray, V.1    Moore, A.G.2    Matias, C.3    Wickham, G.4
  • 30
    • 0027198848 scopus 로고
    • DNA-histone interactions are sufficient to position a single nucleosome juxtaposing Drosophila Adh adult enhancer and distal promoter
    • Jackson J.R., Benyajati C. DNA-histone interactions are sufficient to position a single nucleosome juxtaposing Drosophila Adh adult enhancer and distal promoter. Nucl. Acids Res. 21:1993;957-967.
    • (1993) Nucl. Acids Res. , vol.21 , pp. 957-967
    • Jackson, J.R.1    Benyajati, C.2
  • 31
    • 0029944420 scopus 로고    scopus 로고
    • Genomic position effects lead to an inefficient reorganization of nucleosome in the 5′-regulatory region of the chicken lysozyme locus in transgenic mice
    • Huber M.C., Kruger G., Bonifer C. Genomic position effects lead to an inefficient reorganization of nucleosome in the 5′-regulatory region of the chicken lysozyme locus in transgenic mice. Nucl. Acids Res. 24:1996;1443-1452.
    • (1996) Nucl. Acids Res. , vol.24 , pp. 1443-1452
    • Huber, M.C.1    Kruger, G.2    Bonifer, C.3
  • 32
    • 0025735111 scopus 로고
    • Chromatin differences between active and inactive X chromosomes revealed by genomic footprinting of permeabilized cells using DNase I and ligation-mediated PCR
    • Pfeifer G.P., Riggs A.D. Chromatin differences between active and inactive X chromosomes revealed by genomic footprinting of permeabilized cells using DNase I and ligation-mediated PCR. Genes Develop. 5:1991;1102-1113.
    • (1991) Genes Develop. , vol.5 , pp. 1102-1113
    • Pfeifer, G.P.1    Riggs, A.D.2
  • 33
    • 0018772885 scopus 로고
    • K562 human leukaemic cells synthesise embryonic haemoglobin in response to haemin
    • Rutherford T.R., Clegg J.B., Weatherall D.J. K562 human leukaemic cells synthesise embryonic haemoglobin in response to haemin. Nature. 280:1979;164-165.
    • (1979) Nature , vol.280 , pp. 164-165
    • Rutherford, T.R.1    Clegg, J.B.2    Weatherall, D.J.3
  • 35
    • 0024431684 scopus 로고
    • In vivo footprinting of a muscle specific enhancer by ligation mediated PCR
    • Mueller P.R., Wold B. In vivo footprinting of a muscle specific enhancer by ligation mediated PCR. Science. 246:1989;780-786.
    • (1989) Science , vol.246 , pp. 780-786
    • Mueller, P.R.1    Wold, B.2
  • 36
    • 0024462602 scopus 로고
    • Genomic sequencing and methylation analysis by ligation mediated PCR
    • Pfeifer G.P., Steigerwald S.D., Mueller P.R., Wold B., Riggs A.D. Genomic sequencing and methylation analysis by ligation mediated PCR. Science. 246:1989;810-813.
    • (1989) Science , vol.246 , pp. 810-813
    • Pfeifer, G.P.1    Steigerwald, S.D.2    Mueller, P.R.3    Wold, B.4    Riggs, A.D.5
  • 37
    • 0018403306 scopus 로고
    • Deficient heme synthesis as the cause of noninducibility of hemoglobin synthesis in a friend erythroleukemia cell line
    • Rutherford T.R., Weatherall D.J. Deficient heme synthesis as the cause of noninducibility of hemoglobin synthesis in a friend erythroleukemia cell line. Cell. 16:1979;415-423.
    • (1979) Cell , vol.16 , pp. 415-423
    • Rutherford, T.R.1    Weatherall, D.J.2
  • 38
    • 0022238099 scopus 로고
    • The sequence specificity of bleomycin-induced DNA damage in intact cells
    • Murray V., Martin R.F. The sequence specificity of bleomycin-induced DNA damage in intact cells. J. Biol. Chem. 260:1985;10389-10391.
    • (1985) J. Biol. Chem. , vol.260 , pp. 10389-10391
    • Murray, V.1    Martin, R.F.2
  • 39
    • 0028910271 scopus 로고
    • Express protocol for generating G+A sequencing ladders
    • Belikov S., Wieslander L. Express protocol for generating G+A sequencing ladders. Nucl. Acids Res. 23:1995;310.
    • (1995) Nucl. Acids Res. , vol.23 , pp. 310
    • Belikov, S.1    Wieslander, L.2
  • 40
    • 0027944860 scopus 로고
    • DNA damage induced by bleomycin, neocarzinostatin, and melphalan in a precisely positioned nucleosome
    • Smith B.L., Bauer G.B., Povirk L.F. DNA damage induced by bleomycin, neocarzinostatin, and melphalan in a precisely positioned nucleosome. J. Biol. Chem. 269:1994;30587-30594.
    • (1994) J. Biol. Chem. , vol.269 , pp. 30587-30594
    • Smith, B.L.1    Bauer, G.B.2    Povirk, L.F.3
  • 41
    • 0029834256 scopus 로고    scopus 로고
    • NF-E2 disrupts chromatin structure at human β-globin locus control region hypersensitive site 2 in vitro
    • Armstrong J.A., Emerson B.M. NF-E2 disrupts chromatin structure at human β-globin locus control region hypersensitive site 2 in vitro. Mol. Cell. Biol. 16:1996;5634-5644.
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 5634-5644
    • Armstrong, J.A.1    Emerson, B.M.2
  • 42
    • 0030751851 scopus 로고    scopus 로고
    • Protein-DNA interactions in the human β-globin locus control region hypersensitive site-2 as revealed by four nitrogen mustards
    • Temple M.D., Cairns M.J., Denny W.A., Murray V. Protein-DNA interactions in the human β-globin locus control region hypersensitive site-2 as revealed by four nitrogen mustards. Nucl. Acids Res. 25:1997;3255-3260.
    • (1997) Nucl. Acids Res. , vol.25 , pp. 3255-3260
    • Temple, M.D.1    Cairns, M.J.2    Denny, W.A.3    Murray, V.4
  • 43
    • 0024261880 scopus 로고
    • Statistical positioning of nucleosomes by specific protein-binding to an upstream activating sequence in yeast
    • Fedor M.J., Lue N.F., Kornberg R.D. Statistical positioning of nucleosomes by specific protein-binding to an upstream activating sequence in yeast. J. Molec. Biol. 204:1988;109-127.
    • (1988) J. Molec. Biol. , vol.204 , pp. 109-127
    • Fedor, M.J.1    Lue, N.F.2    Kornberg, R.D.3
  • 44
    • 0025799783 scopus 로고
    • Nucleosomes are positioned with base pair precision adjacent to the a2 operator in Saccharomyces cerevisiae
    • Shimizu M., Roth S.Y., Szent-Gyorgyi C., Simpson R.T. Nucleosomes are positioned with base pair precision adjacent to the a2 operator in Saccharomyces cerevisiae. EMBO J. 10:1991;3033-3041.
    • (1991) EMBO J. , vol.10 , pp. 3033-3041
    • Shimizu, M.1    Roth, S.Y.2    Szent-Gyorgyi, C.3    Simpson, R.T.4
  • 45
    • 0027335550 scopus 로고
    • (CT)n. (GA)n repeats and heat shock elements have distinct roles in chromatin structure and transcriptional activation of the Drosophila hsp26 gene
    • Lu Q., Wallrath L.L., Granok H., Elgin S.C.R. (CT)n. (GA)n repeats and heat shock elements have distinct roles in chromatin structure and transcriptional activation of the Drosophila hsp26 gene. Molec. Cell. Biol. 13:1993;2802-2814.
    • (1993) Molec. Cell. Biol. , vol.13 , pp. 2802-2814
    • Lu, Q.1    Wallrath, L.L.2    Granok, H.3    Elgin, S.C.R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.