The φX174-type primosome promotes replisome assembly at the site of recombination in bacteriophage Mu transposition

EMBO Journal

Volumn 16, Issue 22, 1997, Pages 6886-6895

  Jones, Jessica M ^a   Nakai, Hiroshi ^a  

^a GEORGETOWN UNIVERSITY MEDICAL CENTER   (United States)

Author keywords

In vitro DNA replication; Phage Mu; Primosome; Replisome; Transposition

Indexed keywords

BACTERIAL PROTEIN; DNA A; DNA B; DNA BINDING PROTEIN; DNA DIRECTED DNA POLYMERASE GAMMA; DNA DIRECTED DNA POLYMERASE BETA; DNAT PROTEIN, E COLI; ESCHERICHIA COLI PROTEIN; PRIB PROTEIN, E COLI; REPLICATION PROTEIN A;

ARTICLE; BACTERIOPHAGE MU; BACTERIOPHAGE PHI X 174; DNA RECOMBINATION; DNA SYNTHESIS; DNA TRANSPOSITION; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL; BIOLOGICAL MODEL; DNA REPLICATION; GENETIC RECOMBINATION; GENETICS; METABOLISM; VIROLOGY;

BACTERIAL PROTEINS; BACTERIOPHAGE MU; BACTERIOPHAGE PHI X 174; DNA POLYMERASE I; DNA POLYMERASE III; DNA REPLICATION; DNA-BINDING PROTEINS; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; MODELS, GENETIC; RECOMBINATION, GENETIC; REPLICATION PROTEIN A;

EID: 0031576367     PISSN: 02614189     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (52)

1. Asai,T. and Kogoma,T. (1994) D-loops and R-loops: alternate mechanisms for the initiation of chromosome replication in Escherichia coli. J. Bacteriol., 176, 1807-1812.
2. Chaconas,G., Lavoie,B.D. and Watson,M.A. (1996) DNA transposition: jumping gene machine, some assembly required. Curr. Biol., 6, 817-820.
3. Craigie,K. and Mizuuchi,K. (1987) Transposition of Mu DNA: joining of Mu to target DNA can be uncoupled from cleavage at the ends of Mu. Cell, 51, 493-501.
4. Craigie,R., Mizuuchi,M. and Mizuuchi,K. (1984) Site-specific recognition of the bacteriophage Mu ends by the Mu A protein. Cell. 39, 387-394.
5. Eggleston,A.K. and West,S.C. (1996) Exchanging partners: recombination in E.coli. Trends Genet., 12, 20-26.
6. Goosen,T. (1978) Replication of bactenophage Mu: direction and possible location of the origin. In Molineux.I. and Kohiyama,M. (eds). DNA Synthesis: Present and Future. Plenum Press. New York. pp. 121-126.
7. Harshey,R.M., McKay,R. and Bukhari,A.I. (1982) DNA intermediates in transposition of phage Mu. Cell, 29, 561-571.
8. Higgins,N.P., Moncecchi,D., Manlapaz-Ramos,P. and Olivera,B.M. (1983) Bacteriophage Mu DNA replication in vitro. J. Biol. Chem., 258, 4293-4297.
9. Kaguni,J.M. and Komberg,A. (1984) Replication initiated at the origin (oriC of the E.coli chromosome reconstituted with purified enzymes. Cell, 38, 183-190.
10. Kogoma,T. (1996) Recombination by replication. Cell, 85, 625-627.
11. Kogoma,T., Cadwell,G.W., Barnard,K.G. and Asai,T. (1996) The DNA replication priming protein. PriA. is required for homologous recombination and double-strand break repair. J. Bacteriol., 178, 1258-1264.
12. Kornberg,A. and Baker,T.A. (1992) DNA Replication. W.H.Freeman and Co., New York.
13. Kruklitis,R. and Nakai,H. (1994) Participation of bacteriophage Mu A protein and host factors in initiation of Mu DNA synthesis in vitro. J. Biol. Chem., 269, 16469-16477.
14. Kruklitis,R., Welty,D.J. and Nakai,H. (1996) ClpX protein of Escherichia coli activates bacteriophage Mu transposase in the strand transfer complex for initiation of Mu DNA synthesis. EMBO J., 15, 935-944.
15. Kuo,C.-F., Zou,A., Jayaram,M., Getzoff,E. and Harshey,R. (1991) DNA-protein complexes during attachment-site synapsis in Mu DNA transposition. EMBO J., 10, 1585-1591.
16. Lavoie,B.D. and Chaconas,G. (1996) Transposition of pliage Mu DNA. Curr. Top. Microbiol. Immunol., 204, 83-102.
17. Lavoie,B.D., Chan,B.S., Allison,R.G. and Chaconas,G. (1991) Structural aspects of a higher order nucleoprotein complex: induction of an altered DNA structure at the Mu-host junction of the Mu type I transpososome. EMBO J., 10, 3051-3059.
18. Leach,D. and Symonds,N. (1979) The isolation and characterization of a plaque-forming derivative of bacteriophage Mu carrying a fragment of Tn3 conferring ampicillin resistance. Mol. Gen. Genet., 172, 179-184.
19. Lee,H.H. and Komberg,A. (1991) Replication deficiencies in priA mutants of Escherichia coli lacking the primosomal replication n' protein. Proc. Natl Acad. Sci. USA, 88, 3029-3032.
20. Lee,E.H., Masai,H., Allen,G.C. and Komberg,A. (1990) The pria gene encoding the primosomal replicative n' protein of Escherichia coli. Proc. Natl Acad. Sci. USA, 87, 4620-4624.
21. Levchenko,I., Luo,L., and Baker,T.A. (1995) Disassembly of the Mu transposase tetramer by the ClpX chaperone. Genes Dev., 9, 2399-2408.
22. Liu,J., Nurse,P. and Marians,K.J. (1996) The ordered assembly of the φX174-type primosome: PriB facilitates complex formation between PriA and DnaT. J. Biol. Chem., 271, 15656-15661.
23. Maki,H., Maki,S. and Komberg,A. (1988) DNA polymerase III holoenzyme of Escherichia coli: IV. The holoenzyme is an asymmetric dimer with twin active sites. J. Biol. Chem., 263, 6570-6578.
24. Marians,K.J. (1995) φX174-type primosomal proteins: purification and assay. Methods Enzymol., 262, 507-521.
25. Masai,H. and Arai,K. (1988) Operon structure of the dnaT and dnaC genes essential for normal and stable DNA replication of Escherichia coli chromosome. J. Biol. Chem., 263, 15083-15093.
26. Masai,H., Asai,T., Kubota,Y., Arai,K. and Kogoma,T. (1994) Escherichia coli PriA protein is essential for inducible and constitutive stable DNA replication. EMBO J., 13, 5338-5345.
27. Masukata,H., Dasgupta,S. and Tomizawa,J. (1987) Transcriptional activation of ColE1 DNA synthesis by displacement of the nontranscribed strand. Cell, 51, 1123-1130.
28. McBeth,D.L. and Taylor,A.L. (1982) Growth of bacteriophage Mu in Escherichia coli dnaA mutants. J. Virol., 44, 555-564.
29. McGlynn,P., Al-Deib,A.A., Liu,J., Marians,K.J. and Lloyd,K.G. (1997) The DNA replication protein PriA and the recombination protein RecG bind D-loops. J. Mol. Biol., 270, 212-221.
30. Minden,J.S. and Marians,K.J. (1985) Replication of pBR322 DNA in vitro with purified proteins. J. Biol. Chem., 260, 9316-9325.
31. Mizuuchi,K. (1983) In vitro transposition of bacteriophage Mu: a biochemical approach to a novel replication reaction. Cell, 35, 785-794.
32. Mizuuchi,K. (1992) Transpositional recombination: mechanistic insights from studies of Mu and other elements. Annu. Rev. Biochem., 61, 1011-1051.
33. Mizuuchi,M., Baker,T.A. and Mizuuchi,K. (1992) Assembly of the active form of the transposase-Mu DNA complex: a critical control point in Mu transposition. Cell, 70, 303-311.
34. Nakai,H. and Kruklitis,R. (1995) Disassembly of the bacteriophage Mu transposase for the initiation of Mu DNA replication. J. Biol. Chem., 270, 19591-19598.
35. Ng,J.Y. and Marians,K.J. (1996a) The ordered assembly of the φX174-type primosome: isolation and identification of intermediate protein-DNA complexes. J. Biol. Chem., 271, 15642-15648.
36. Ng,J.Y. and Marians,K.J. (1996b) The ordered assembly of the φX174-type primosome: preservation of primosome composition from assembly through replication. J. Biol. Chem., 271, 15649-15655.
37. Nurse,P., Zavitz,K.H. and Marians,K.J. (1991) Inactivation of the Escherichia coli priA DNA replication protein induces the SOS response. J. Bacteriol., 173, 6686-6693.
38. Pato,M.L. and Waggoner,B.T. (1987) Replication of Mu DNA in vivo. In Symonds,N., Toussaint,A., van de Putte,P. and Howe,M.M. (eds). Phage Mu. Cold Spring Harbor Laboratory Press. Cold Spring Harbor. NY. pp. 177-189.
39. Résibois,A., Colet,M. and Toussaint,A. (1982a) Localisation of mini-Mu in its replication intermediates. EMBO J., 1, 965-969.
40. Résibois,A., Toussaint,A. and Colet,M. (1982b) DNA structures induced by mini-Mu replication. Virology, 117, 329-340.
41. Résibois,A., Pato,M., Higgins,P. and Toussaint,A. (1984) Replication of bacteriophage Mu and its mini-Mu derivatives. In Hubscher,U. and Spadari,S. (eds). Proteins Involved in DNA Replication. Plenum Press. New York. pp. 69-76.
42. Sambrook,J., Fritsch,E.F. and Maniatis,T. (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press. Cold Spring Harbor, NY.
43. Selden,R.F. (1992) Southern blotting and hybridization. In Ausubel,F.M., Brent,R., Kingston,R.E., Moore,D.D., Seidman,J.G., Smith,J.A. and Struhl,K. (eds). Current Protocols in Molecular Biology, Greene Publishing Associates and Wiley-Interscience. New York, Vol. 1. pp. 2.9.1-2.9.10.
44. Shlomai,J. and Komberg,A. (1980) An Escherichia coli replication protein that recognizes a unique sequence hairpin within a region of φX174 DNA. Proc. Natl Acad. Sci. USA, 77, 799-803.
45. Stuitje,A.R., Weisbeek,P.J. and Meijer,M. (1984) Initiation signals for complementary strand DNA synthesis in the region of the replication origin of the Escherichia coli chromosome. Nucleic Acids Res., 12, 3321-3332.
46. Surette,M.G., Buch,S.J. and Chaconas,G. (1987) Transpososomes: stable protein-DNA complexes involved in the in vitro transposition of bacteriophage Mu DNA. Cell, 49, 253-262.
47. Tougo,K., Peng,H. and Marians,K.J. (1994) Identification of a domain of Escherichia coli primase required for functional interaction with the dnaB helicase at the replication fork. J. Biol. Chem., 269, 4675-4682.
48. Wickner,S. and Hurwitz,J. (1975) Association of φX174 DNA-dependent ATPase activity with an Escherichia coli protein, replication factor Y, required for in vitro synthesis of φX174 DNA. Proc. Natl Acad. Sci. USA, 72, 3342-3346.
49. Wijffelman,C. and van de Putte,P. (1977) Asymmetric hybridization of Mu strands with short fragments synthesized during Mu DNA replication. In Bukhari,A.I., Shapiro,J.A. and Adhya,S.L. (eds), DNA Insertion Elements, Plasmids, and Episomes. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 329-333.
50. Wu,C.A., Zechner,E.L. and Marians,K.J. (1992) Coordinated leading-and lagging-strand synthesis at the Escherichia coli DNA replication fork: multiple effectors act to modulate Okazaki fragment size. J. Biol. Chem., 267, 4030-4044.
51. Yuzhakov,A., Turner, J. and O'Donnell,M. (1996) Replisome assembly reveals the basis for asymmetric function in leading and lagging strand replication. Cell, 86, 877-886.
52. Zipursky,S.L. and Marians,K.J. (1980) Identification of two Escherichia coli factor Y effector sites near the origins of replication of plasmids ColE1 and pBR322. Proc. Natl Acad. Sci. USA, 77, 6521-6525.