Buried polar interactions and conformational stability in the simian immunodeficiency virus (SIV) gp41 core

Biochemistry

Volumn 39, Issue 4, 2000, Pages 676-685

  Ji, Hong ^a   Bracken, Clay ^a   Lu, Min ^a  

^a WEILL CORNELL MEDICAL COLLEGE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CORE PROTEIN; GLYCOPROTEIN GP 41; ISOLEUCINE; MUTANT PROTEIN; OLIGOMER;

ALPHA HELIX; AMINO ACID SUBSTITUTION; AMINO TERMINAL SEQUENCE; ARTICLE; CONFORMATIONAL TRANSITION; CONTROLLED STUDY; MOLECULAR INTERACTION; NONHUMAN; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN QUATERNARY STRUCTURE; PROTEIN STABILITY; REACTION ANALYSIS; SIMIAN IMMUNODEFICIENCY VIRUS; STRUCTURE ACTIVITY RELATION; STRUCTURE ANALYSIS;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ANIMALS; CIRCULAR DICHROISM; GLUTAMINE; ISOLEUCINE; MACACA; MEMBRANE GLYCOPROTEINS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PEPTIDE FRAGMENTS; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY; RECOMBINANT PROTEINS; RETROVIRIDAE PROTEINS; SIMIAN IMMUNODEFICIENCY VIRUS; THERMODYNAMICS; THREONINE; VIRAL ENVELOPE PROTEINS;

RNA VIRUSES; SIMIAE; SIMIAN IMMUNODEFICIENCY VIRUS;

EID: 0034142250     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi991893e     Document Type: Article

References (73)

1. Hunter, E., and Swanstrom, R. (1990) Curr. Top. Microbiol. Immunol. 157, 187-253.
2. Moore, J. P., Jameson, B. A., Weiss, R. A., and Sattentau, Q. J. (1993) In Viral Fusion Mechanisms (Bentz, J., Ed.) pp 233-289, CRC Press, Boca Raton, FL.
3. Kwong, P. D., Wyatt, R., Robinson, J., Sweet, R. W., Sodroski, J., and Hendrickson, W. A. (1998) Nature 393, 648-659.
4. Rizzuto, C. D., Wyatt, R., Hernandez-Ramos, N., Sun, Y., Kwong, P. D., Hendrickson, W. A., and Sodroski, J. (1998) Science 280, 1949-1953.
5. Chan, D. C., and Kim, P. S. (1998) Cell 93, 681-684.
6. Lu, M., Blacklow, S. C., and Kim, P. S. (1995) Nat. Struct. Biol. 2, 1075-1082.
7. Blacklow, S. C., Lu, M., and Kim, P. S. (1995) Biochemistry 34, 14955-14962.
8. Lu, M., and Kim, P. S. (1997) J. Biomol. Struct. Dyn. 15, 465-471.
9. Chan, D. C., Fass, D., Berger, J. M., and Kim, P. S. (1997) Cell 89, 263-273.
10. Weissenhorn, W., Dessen, A., Harrison, S. C., Skehel, J. J., and Wiley, D. C. (1997) Nature 387, 426-430.
11. Tan, K., Liu, J., Wang, J., Shen, S., and Lu, M. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 12303-12308.
12. Caffrey, M., Cai, M., Kaufman, J., Stahl, S. J., Wingfield, P. T., Covell, D. G., Gronenborn, A. M., and Clore, G. M. (1998) EMBO J. 17, 4572-4584.
13. Malaskkevich, V. N., Chan, D. C., Chutkowski, C. T., and Kim, P. S. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, 9134-9139.
14. Jiang, S, Lin, K, and Lu, M. (1998) J. Virol. 72, 10213-10217.
15. Lu, M., Ji, H., and Shen, S. (1999) J. Virol. 73, 4433-4438.
16. Wiley, D. C., and Skehel, J. J. (1987) Annu. Rev. Biochem. 56, 365-394.
17. Stegmann, T., and Helenius, A. (1993) in Viral Fusion Mechanisms (Bentz, J., Ed.) pp 233-289, CRC Press, Boca Raton, FL.
18. Carr, C. M., and Kim, P. S. (1993) Cell 73, 823-832.
19. Bullough, P. A., Hughson, F. M., Skehel, J. J., and Wiley, D. C. (1994) Nature 371, 37-43.
20. Chen, J., Wharton, S. A., Weissenhorn, W., Calder, L. J., Hughson, F. M., Skehel, J. J., and Wiley, D. C. (1995) Proc. Natl. Acad. Sci. U.S.A. 92, 12205-12209.
21. Carr, C. M., Chaudhry, C., and Kim, P. S. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 14306-14313.
22. Skehel, J. J., and Wiley, D. C. (1998) Cell 95, 871-874.
23. Wild, C. T., Oas, T., McDanal, C. B., Bolognesi, D., and Matthews, T. J. (1992) Proc. Natl. Acad. Sci. U.S.A. 89, 10537-10541.
24. Jiang, S., Lin, K., Strick, N., and Neurath, A. R. (1993) Nature 365, 113.
25. Wild, C. T., Shugars, D. C., Greenwell, T. K., McDanal, C. B., and Matthews, T. J. (1994) Proc. Natl. Acad. Sci. U.S.A. 91, 9770-9774.
26. Chen, C. H., Matthews, T. J., McDanal, C. B., Bolognesi, D. P., and Greenberg, M. L. (1995) J. Virol. 69, 3771-3777.
27. Wild, C. T., Greenwell, T., Shugars, D., Rimsky-Clarke, L., and Matthews, T. (1995) AIDS Res. Hum. Retroviruses 11, 323-325.
28. Judice, J. K., Tom, J. Y. K., Huang, W., Wrin, T., Vennari, J., Petropoulos, C. J., and McDowell, R. S. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 13426-13430.
29. Rimsky, L. T., Shugars, D. C., and Matthews, T. J. (1998) J. Virol. 72, 986-993.
30. Furuta, R. A., Wild, C. T., Weng, Y., and Weiss, C. D. (1998) Nat. Struct. Biol. 5, 276-279.
31. Munoz-Barroso, I., Durell, S., Sakaguchi, K., Appella, E., and Blumenthal, R. (1998) J. Cell Biol. 140, 315-323.
32. Chan, D. C., Chutkowski, C. T., and Kim, P. S. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, 15613-15617.
33. Ji, H., Shu, W., Burling, F. T., Jiang, S., and Lu, M. (1999) J. Virol. 73, 8578-8586.
34. Hughson, F. M. (1997) Curr. Biol. 7, R565-R569.
35. Delwart, E. J., Mosialos, G., and Gilmore, T. (1990) AIDS Res. Hum. Retroviruses 6, 703-706.
36. Chambers, P., Pringle, C. R., and Easton, A. J. (1990) J. Gen. Virol. 71, 3075-3080.
37. Gallaher, W. R., Ball, J. M., Garry, R. F., Griffin, M. C., and Montelaro, R. C. (1989) AIDS Res. Hum. Retroviruses 5, 431-440.
38. Dubay, J. W., Roberts, S. J., Brody, B., and Hunter, E. (1992) J. Virol. 66, 4748-4756.
39. Cao, J., Bergeron, L., Helseth, E., Thali, M., Repke, H., and Sodroski, J. (1993) J. Virol. 67, 2747-2755.
40. Chen, S. S., Lee, C. N., Lee, W. R., McIntosh, K., and Lee, T. H. (1993) J. Virol. 67, 3615-3619.
41. Wild, C. T., Dubay, J. W., Greenwell, T. K., Baird, Jr. T., Oas, T. G., McDanal, C. B., Hunter, E., and Matthews, T. J. (1994) Proc. Natl. Acad. Sci. U.S.A. 91, 12676-12680.
42. Shu, W., Ji, H., and Lu, M. (1999) Biochemistry 38, 5378-5385.
43. Harbury, P. B., Kim, P. S., and Alber, T. (1994) Nature 371, 80-83.
44. Kunkel, T. A., Roberts, J. D., and Zakour, R. A. (1987) Methods Enzymol. 154, 367-382.
45. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
46. Studier, F. W., Rosenberg, A. H., Dunn, J. J., and Dubendorff, J. W. (1990) Methods Enzymol. 185, 60-89.
47. Edelhoch, H. (1967) Biochemistry 6, 1948-1954.
48. Chen, Y.-H., Yang, J. T., and Chau, K. H. (1974) Biochemistry 13, 3350-3359.
49. Cantor, C., and Schimmel, P. (1980) Biophysical Chemistry, Freeman, New York.
50. Marky, L. A., and Bresslauer, K. J. (1987) Biopolymers 26, 1601-1620.
51. Santoro, M. M., and Bolen, D. W. (1988) Biochemistry 27, 8063-8068.
52. Backmann, J., Schafer, G., Wyns, L., and Bonisch, H. (1998) J. Mol. Biol. 284, 817-833.
53. Laue, T. M., Shah, B. D., Ridgeway, T. M., and Pelletier, S. L. (1992) in Analytical Ultracentrifugation in Biochemistry and Polymer Science (Harding, S. E., Rowe, A. J., and Horton, J. C., Eds.) pp 90-125, The Royal Society of Chemistry, Cambridge, U.K.
54. Live, D. H., Davis, D. G., Agosta, W. C., and Cowburn, D. (1984) J. Am. Chem. Soc. 106, 1939-1941.
55. Wishart, D. S., Bigam, C. G., Yao, J., Abildgaard, F., Dyson, H. J., Oldfield, E., Markley, J. L., and Sykes, B. D. (1995) J. Biomol. NMR 6, 135-140.
56. Delaglio, F., Grzesiek, S., Vuister, G., Zhu, G., Pfeifer, J., and Bax, A. (1995) J. Biomol. NMR 6, 227-293.
57. Kallenbach, N. R., Zhou, H. X., and Lyu, P. C. (1996) in Circular Dichroism and the Conformational Analysis of Biomolecules (Fasman, G. D., Ed.) pp 201-259, Plenum Press, New York.
58. Myers, J. K., Pace, C. N., and Scholtz, J. M. (1995) Protein Sci. 4, 2138-2148.
59. Harbury, P. B., Zhang, T., Kim, P. S., and Alber, T. (1993) Science 262, 1401-1407.
60. Privalov, P. L. (1979) Adv. Protein Chem. 33, 167-241.
61. Dill, K. A. (1990) Biochemistry 29, 7133-7155.
62. Betz, S. F., Bryson, J. W., and DeGrado, W. F. (1995) Curr. Opin. Struct. Biol. 5, 457-463.
63. Gonzalez, Jr. L., Woolfson, D. N., and Alber, T. (1996) Nat. Struct. Biol. 3, 1011-1018.
64. Weissman, J. S., and Kim, P. S. (1991) Science 253, 1386-1393.
65. Moore, J. P., McKeating, J. A., Weiss, R. A., and Sattentau, Q. J. (1990) Science 250, 1139-1142.
66. Hart, T. K., Kirsh, R., Ellens, H., Sweet, R. W., Lambert, D. M., Petteway, S. R., Jr., Leary, J., and Bugelski, P. J. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 2189-2193.
67. Allan, J. S. (1991) Science 252, 1322-1323.
68. Sattentau, Q. J., and Moore, J. P. (1993) Philos. Trans. R. Soc. B 342, 59-66.
69. Sattentau, Q. J., Moore, J. P., Vignaux, F., Traincard, F., and Poignard, P. (1993) J. Virol. 67, 7383-7393.
70. Allan, J. S., Strauss, J., and Buck, D. W. (1990) Science 247, 1084-1088.
71. Sullivan, N., Sun, Y., Li, J., Hofmann, W., and Sodroski, J. (1995) J. Virol. 69, 4413-4422.
72. Nicholls, A., Sharp, K. A., and Honig, B. (1991) Proteins 11, 281-296.
73. Evans, S. V. (1993) J. Mol. Graphics 11, 134-138.