Microsatellite variation in populations of Drosophila pseudoobscura and Drosophila persimilis

Genetical Research

Volumn 75, Issue 1, 2000, Pages 25-35

  Noor, Mohamed A F ^a,b   Schug, Malcolm D ^a   Aquadro, Charles F ^a  

^a Department of Obstetrics Gynecology   (United States)

^b LOUISIANA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALLOENZYME; DINUCLEOTIDE; MICROSATELLITE DNA; TRINUCLEOTIDE;

ANIMAL TISSUE; ARTICLE; CHROMOSOME; DINUCLEOTIDE REPEAT; DROSOPHILA; FEMALE; GENETIC POLYMORPHISM; GENETIC VARIABILITY; MALE; MUTATION RATE; NONHUMAN; NUCLEOTIDE SEQUENCE; POPULATION GENETICS; TRINUCLEOTIDE REPEAT;

ANIMALS; BASE SEQUENCE; DNA PRIMERS; DROSOPHILA; MICROSATELLITE REPEATS; SPECIES SPECIFICITY; VARIATION (GENETICS);

ANIMALIA; ARACHNIDA; DROSOPHILA MELANOGASTER; DROSOPHILA PERSIMILIS; DROSOPHILA PSEUDOOBSCURA; HEXAPODA; MELANOGASTER;

EID: 0034105646     PISSN: 00166723     EISSN: None     Source Type: Journal    
DOI: 10.1017/S0016672399004024     Document Type: Article

References (41)

1. Amos, W. & Rubinsztein, D. C. (1996). Microsatellites are subject to directional evolution. Nature Genetics 12, 13-14.
2. Anderson, W. W. (1993). Linkage map of Drosophila pseudoobscura. In Genetic Maps: Locus Maps of Complex Genomes (ed. S. J. O'Brien), pp. 3.252-3.253. Plainview. NY: Cold Spring Harbor Laboratory Press.
3. Anderson, W. W., Arnold, J., Baldwin, D. G., et al. (1991). Four decades of inversion polymorphism in Drosophila pseudoobscura. Proceedings of the National Academy of Sciences of the USA 88, 10367-10371.
4. Aquadro, C. F., Weaver, A. L., Schaeffer, S. W. & Anderson, W. W. (1991). Molecular evolution of inversions in Drosophila pseudoobscura: the amylase gene region. Proceedings of the National Academy of Sciences of the USA 88, 305-309.
5. Babcock, C. S. & Anderson, W. W. (1996). Molecular evolution of the sex-ratio inversion complex in Drosophila pseudoobscura: analysis of the Esterase-5 gene region. Molecular Biology and Evolution 13, 297-308.
6. Choudhary, M. & Singh, R. S. (1987). Historical effective size and the level of genetic diversity in Drosophila melanogaster and Drosophila pseudoobscura. Biochemical Genetics 25, 41-51.
7. Crawford, A. M., Kappes, S. K., Paterson, K. A., deGotari, M. J., Dodds, K. G., Freking, B. A., Stone, R. T. & Beattie, C. W. (1998). Microsatellite evolution: testing the ascertainment bias hypothesis. Journal of Molecular Evolution 46, 256-260.
8. Ellegren, H., Primmer, C. R. & Sheldon, B. C. (1995). Microsatellite 'evolution': directionality or bias? Nature Genetics 11, 360-362.
9. Ellegren, H., Moore, S., Robinson, N., Byrne, K., Ward, W. & Sheldon, B. C. (1997). Microsatellite evolution: a reciprocal study of repeat lengths at homologous loci in cattle and sheep. Molecular Biology and Evolution 14, 854-860.
10. Gloor, G. B., Preston, C. R., Johnson-Schlitz, D. M., Nassif, N. A., Phillis, R. W., Benz, W. K., Robertson, H. M. & Engels, W. R. (1993). Type I repressors of P element mobility. Genetics 135, 81-95.
11. Goldstein, D. B. & Clark, A. G. (1995). Microsatellite variation in North American populations of Drosophila melanogaster. Nucleic Acids Research 23, 3882-3886.
12. Goldstein, D. B., Ruiz-Linares. A., Feldman, M. W. & Cavalli-Sforza, L. L. (1995). Genetic absolute dating based on microsatellites and the origin of modern humans. Proceedings of the National Academy of Sciences of the USA 92, 6720-6727.
13. Goudet, J. (1995). FSTAT, a program for IBM PC compatibles to calculate Weir and Cockerham's estimators of F-statistics.
14. Haldane, J. B. S. (1919). The combination of linkage values and the calculation of distances between the loci of linked factors. Journal of Genetics 8, 299-309.
15. Hamblin, M. T. & Aquadro, C. F. (in press). DNA sequence variation and the recombinational landscape in Drosophila pseudoobscura: a study of the second chromosome. Genetics, in press.
16. Hutter, C. M., Schug, M. D. & Aquadro, C. F. (1998). Microsatellite variation in Drosophila melanogaster and D. simulans: a reciprocal test of the ascertainment bias hypothesis. Molecular Biology and Evolution 15, 1620-1636.
17. Irvin, S. D., Wetterstrand, K. A., Hutter, C. M. & Aquadro, C. F. (1998). Genetic variation and differentiation at microsatellite loci in Drosophila simulans: evidence for founder effects in New World populations. Genetics 150, 777-790.
18. Jenkins, T. M., Basten, C. J. & Anderson, W. W. (1996). Mitochondrial gene divergence of Colombian Drosophila pseudoobscura. Molecular Biology and Evolution 13, 1266-1275.
19. Kosambi, D. D. (1944). The estimation of map distances from recombination values. Annals of Eugenics 12, 172-175.
20. Kreitman, M. (1983). Nucleotide polymorphism at the alcohol dehydrogenase locus of Drosophila melanogaster. Nature 304, 412-417.
21. Noor, M. A. F. (1997). Genetics of sexual isolation and courtship dysfunction in male hybrids of Drosophila pseudoobscura and D. persimilis. Evolution 51, 809-815.
22. Noor, M. A. F. & Aquadro, C. F. (1998). Courtship songs of Drosophila pseudoobscura and D. persimilis: analysis of variation. Animal Behaviour 56, 115-125.
23. Orr, H. A. (1987). Genetics of male and female sterility in hybrids of Drosophila pseudoobscura and D. persimilis. Genetics 116, 555-563.
24. Orr, H. A. (1995). A new linkage map of the D. pseudoobscura X chromosome. Drosophila Information Service 76, 127-128.
25. Prakash, S., Lewontin, R. C. & Hubby, J. L. (1969). A molecular approach to the study of genic heterozygosity in natural populations. IV. Patterns of genic variation in central, marginal and isolated populations of Drosophila pseudoobscura. Genetics 61, 841-858.
26. Richter, B., Long, M., Lewontin, R. C. & Nitasaka, E. (1997). Nucleotide variation and conservation at the dpp locus, a gene controlling early development in Drosophila. Genetics 145, 311-323.
27. Rozas, J., Segarra, C., Ribó, G. & Aguadé, M. (1999). Molecular population genetics of the rp49 gene region in different chromosomal inversions of Drosophila subobscura. Genetics 151, 189-202.
28. Rubinsztein, D. C., Amos, W., Leggo, J., Goodburn, S., Jain, S., Li, S.-H., Margolis, R. L., Ross, C. A & Ferguson-Smith, M. A. (1995). Microsatellite evolution: evidence for directionality and variation in rate between species. Nature Genetics 10, 337-343.
29. Schaeffer, S. (1995). Population genetics in Drosophila pseudoobscura: a synthesis based on nucleotide sequence data for the Adh gene. In Genetics of Natural Populations: The Continuing Importance of Theodosius Dobzhansky (ed. L. Levine), pp. 329-352. New York: Columbia University Press.
30. Schaeffer, S. W. & Miller, E. L. (1992). Estimates of gene flow in Drosophila pseudoobscura determined from nucleotide sequence analysis of the alcohol dehydrogenase region. Genetics 132, 471-480.
31. Schlotterer, C., Vogl, C. & Tautz, D. (1997). Polymorphism and locus-specific effects on polymorphism at microsatellite loci in natural Drosophila melanogaster populations. Genetics 146, 309-320.
32. Schug, M. D., Mackay, T. F. C. & Aquadro, C. F. (1997). Low mutation rates of microsatellite loci in Drosophila melanogaster. Nature Genetics 15, 99-102.
33. Schug, M. D., Hutter, C. M., Noor, M. A. F. & Aquadro, C. F. (1998a). Mutation and evolution in microsatellites of Drosophila melanogaster. Genetica 102/103, 359-367.
34. Schug, M. D., Wetterstrand, K. A., Gaudette, M. S., Lim, R. H., Hutter, C. M. & Aquadro, C. F. (1998a). The distribution and frequency of microsatellite loci in Drosophila melanogaster. Molecular Ecology 7, 57-70.
35. Schug, M. D., Hutter, C. M., Wetterstrand, K. A., Gaudette, M. A., Mackay, T. F. C. & Aquadro, C. F. (1998c). The mutation rate of di-, tri-, and tetranucleotide repeats in Drosophila melanogaster. Molecular Biology and Evolution 15, 1751-1760.
36. Slatkin, M. (1995). A measure of population subdivision based on microsatellite allele frequencies. Genetics 139, 457-462.
37. Tan, C. C. (1946). Genetics of sexual isolation between Drosophila pseudoobscura and Drosophila persimilis. Genetics 31, 558-573.
38. True, J. R., Mercer, J. M. & Laurie, C. C. (1996). Differences in crossover frequency and distribution among three sibling species of Drosophila. Genetics 142, 507-523.
39. Wang, R. L., Wakeley, J. & Hey, J. (1997). Gene flow and natural selection in the origin of Drosophila pseudoobscura and close relatives. Genetics 147, 1091-1106.
40. n polymorphisms. Genomics 7, 517-524.
41. Wetterstrand, K. A. (1997). Microsatellite polymorphism and divergence in worldwide populations of Drosophila melanogaster and D. simulans. Masters thesis. Ithaca, NY: Cornell University.