Shotgun sample sequence comparisons between mouse and human genomes

Nature Genetics

Volumn 25, Issue 1, 2000, Pages 31-33

  Bouck, John B ^a   Metzker, Michael L ^a   Gibbs, Richard A ^a  

^a BAYLOR COLLEGE OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; MESSENGER RNA;

DNA SEQUENCE; GENETIC TRANSCRIPTION; GENOME; HUMAN; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RAT; REVIEW; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE;

ANIMALS; CLONING, MOLECULAR; COMPUTATIONAL BIOLOGY; FEMALE; GENOME; GENOMIC LIBRARY; HUMANS; MICE; MICE, INBRED C57BL; RATS; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID;

RODENTIA;

EID: 0034022927     PISSN: 10614036     EISSN: None     Source Type: Journal    
DOI: 10.1038/75563     Document Type: Review

References (19)

1. Ansari Lari, M.A et al. Comparative sequence analysis of a gene rich cluster at human chromosome 12p13 and its syntenic region in mouse chromosome 6. Genome Res. 8, 29-40 (1998).
2. Hardison, R.C., Oeltjen, J. & Miller, W. Long human mouse sequence alignments reveal novel regulatory elements: a reason to sequence the mouse genome Genome Res. 7, 959-966 (1997).
3. Touchman, J.W. et al. The genomic region encompassing the nephropathic cystinosis gene (CTNS): complete sequencing of a 200 kb segment and discovery of a novel gene within the common cystinosis-causing deletion. Genome Res. 10, 165-173 (2000)
4. Koop, B.F. et al. Organization, structure, and function of 95 kb of DNA spanning the murine T-cell receptor C u/C δ region. Genomics 13, 1209-1230 (1992).
5. Oeltjen, J.C. et al. Large-scale comparative sequence analysis of the human and murine Bruton's tyrosine kinase loci reveals conserved regulatory domains. Genome Res. 7, 315-329 (1997).
6. Myers, M.P., Rothenfluh, A., Chang, M. & Young, M.W. Comparison of chromosomal DNA composing timeless in Drosophila melanogaster and D. virilis suggests a new conserved structure for the TIMELESS protein. Nucleic Acids Res. 25, 4710-4714 (1997).
7. The C. elegans Consortium. Genome sequence of the nematode C. elegans: a platform for investigating biology Science 282, 2012-2018 (1998); errata: 283, 35 (1999), 283, 2103 (1999); 285, 1493 (1999)
8. Tunnicliffe, G.R., Gloeckner, G., Elgar, G.S., Brenner, S. & Rosenthal, A. Comparative analysis of the PCOLCE region in Fugu Rubripes using a new automated annotation tool. Mamm. Genome 11, 213-219 (2000).
9. Carver, E.A. & Stubbs, L Zooming in on the human mouse comparative map genome conservation re-examined on a high resolution scale Genome Res 7, 1123-1137 (1997).
10. Smit, A F. Interspersed repeats and other mementos of transposable elements in mammalian genomes Curr. Opin. Genet. Dev 9, 657-663 (1999)
11. Collins, F.S. et al. New goals for the U S Human Genome Project 1998-2003 Science 282, 682-689 (1998).
12. Battey, J., Jordan, E., Cox, D. & Dove, W An action plan for mouse genomics Nature Genet. 21, 73-75 (1999).
13. Pennisi, E. Genomics Mouse sequencers take up the shotgun Science 287, 1179 (1181)
14. Adams, M.D. et al. The genome sequence of Drosophila melanogaster Science 287, 2185-2195 (2000)
15. Bouck, J., Miller, W., Gorrell, J.H., Muzny, D. & Gibbs, R A. Analysis of the quality and utility of random shotgun sequencing at low redundancies. Genome Res 8, 1074-1084 (1998).
16. Andersson, B., Wentland, M.A., Ricafrente, J Y., Liu, W & Gibbs, R.A A "double adaptor" method for improved shotgun library construction. Anal Biochem 236, 107-113 (1996).
17. Metzker, M.L., Lu, J. & Gibbs, R.A. Electrophoretically uniform fluorescent dyes for automated DNA sequencing. Science 271, 1420-1422 (1996)
18. Altschul, S.F. et al. Gapped BLAST and PSI BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402 (1997)
19. Bouck, J., McLeod, M.P., Worley, K. & Gibbs, R. The human transcipt database a catalogue of full length cDNA inserts Bioinformatics (in press)