-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., T. L. Madden. A. A. Schaffer, J. Zhang, Z. Zhang, and W. M. D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Lipman, W.M.D.J.6
-
2
-
-
0003855149
-
-
Greene Publishing Associates and John Wiley & Sons, New York, N.Y.
-
Ausubel, F. M., R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl (ed.). 1992. Short protocols in molecular biology. Greene Publishing Associates and John Wiley & Sons, New York, N.Y.
-
(1992)
Short Protocols in Molecular Biology
-
-
Ausubel, F.M.1
Brent, R.2
Kingston, R.E.3
Moore, D.D.4
Seidman, J.G.5
Smith, J.A.6
Struhl, K.7
-
3
-
-
0030984912
-
Characterization of the nitric oxide reductase-encoding region in Rhodobacter sphaeroides 2.4.3
-
Bartnikas, T. B., I. E. Tosques, W. P. Laratta, J. Shi, and J. P. Shapleigh. 1997. Characterization of the nitric oxide reductase-encoding region in Rhodobacter sphaeroides 2.4.3. J. Bacteriol. 179:3534-3540.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 3534-3540
-
-
Bartnikas, T.B.1
Tosques, I.E.2
Laratta, W.P.3
Shi, J.4
Shapleigh, J.P.5
-
4
-
-
0031024020
-
Anaerobic activation of toluene and o-xykne by addition to fumarate in denitrifying strain T
-
Beller, H. R., and A. M. Spormann. 1997. Anaerobic activation of toluene and o-xykne by addition to fumarate in denitrifying strain T. J. Bacteriol. 179:670-676.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 670-676
-
-
Beller, H.R.1
Spormann, A.M.2
-
5
-
-
0031680541
-
Analysis of the novel benzylsuccinate synthase reaction for anaerobic toluene activation based on structural studies of the product
-
Beller, H. R., and A. M. Spormann. 1998. Analysis of the novel benzylsuccinate synthase reaction for anaerobic toluene activation based on structural studies of the product. J. Bacteriol. 180:5454-5457.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 5454-5457
-
-
Beller, H.R.1
Spormann, A.M.2
-
6
-
-
0030036363
-
Evidence that anaerobic oxidation of toluene in the denitrifying bacterium Thauera aromatica is initiated by formation of benzylsuccinate from toluene and fumarate
-
Biegert, T., G. Fuchs, and J. Heider. 1996. Evidence that anaerobic oxidation of toluene in the denitrifying bacterium Thauera aromatica is initiated by formation of benzylsuccinate from toluene and fumarate. Eur. J. Biochem. 238:661-668.
-
(1996)
Eur. J. Biochem.
, vol.238
, pp. 661-668
-
-
Biegert, T.1
Fuchs, G.2
Heider, J.3
-
7
-
-
0021770582
-
A computer algorithm for testing potential prokaryotic terminators
-
Brendel, V., and E. N. Trifonov. 1984. A computer algorithm for testing potential prokaryotic terminators. Nucleic Acids Res. 12:4411-4427.
-
(1984)
Nucleic Acids Res.
, vol.12
, pp. 4411-4427
-
-
Brendel, V.1
Trifonov, E.N.2
-
8
-
-
0031859610
-
Identification and analysis of genes involved in anaerobic toluene metabolism by strain T1: Putative role of a glycine free radical
-
Coschigano, P. W., T. S. Wehrman, and L. Y. Young. 1998. Identification and analysis of genes involved in anaerobic toluene metabolism by strain T1: putative role of a glycine free radical. Appl. Environ. Microbiol. 64:1650-1656.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 1650-1656
-
-
Coschigano, P.W.1
Wehrman, T.S.2
Young, L.Y.3
-
9
-
-
0030999250
-
Identification and sequence analysis of two regulatory genes involved in anaerobic toluene metabolism by strain T1
-
Coschigano, P. W., and L. Y. Young. 1997. Identification and sequence analysis of two regulatory genes involved in anaerobic toluene metabolism by strain T1. Appl. Environ. Microbiol. 63:652-660.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 652-660
-
-
Coschigano, P.W.1
Young, L.Y.2
-
10
-
-
0030438017
-
Mutational analysis of the nor gene cluster which encodes nitric-oxide reductase from Paracoccus denitrificans
-
de Boer, A. P. N., J. van der Oost, W. N. M. Reijnders, H. V. Westerhoff, A. H. Stouthamer, and R. J. M. van Spanning. 1996. Mutational analysis of the nor gene cluster which encodes nitric-oxide reductase from Paracoccus denitrificans. Eur. J. Biochem. 242:592-600.
-
(1996)
Eur. J. Biochem.
, vol.242
, pp. 592-600
-
-
De Boer, A.P.N.1
Van Der Oost, J.2
Reijnders, W.N.M.3
Westerhoff, H.V.4
Stouthamer, A.H.5
Van Spanning, R.J.M.6
-
11
-
-
0025655580
-
Isolation and characterization of a bacterium that mineralizes toluene in the absence of molecular oxygen
-
Dolfing, J., J. Zeyer, P. Binder-Eicher, and R. P. Schwarzenbach. 1990. Isolation and characterization of a bacterium that mineralizes toluene in the absence of molecular oxygen. Arch. Microbiol. 154:336-341.
-
(1990)
Arch. Microbiol.
, vol.154
, pp. 336-341
-
-
Dolfing, J.1
Zeyer, J.2
Binder-Eicher, P.3
Schwarzenbach, R.P.4
-
12
-
-
0025825745
-
Anaerobic degradation of toluene by a denitrifying bacterium
-
Evans, P. J., D. T. Mang, K. S. Kim, and L. Y. Young. 1991. Anaerobic degradation of toluene by a denitrifying bacterium. Appl. Environ. Microbiol. 57:1139-1145.
-
(1991)
Appl. Environ. Microbiol.
, vol.57
, pp. 1139-1145
-
-
Evans, P.J.1
Mang, D.T.2
Kim, K.S.3
Young, L.Y.4
-
13
-
-
0026071363
-
Degradation of toluene and m-xylene and transformation of o-xylene by denitrifying enrichment cultures
-
Evans, P. J., D. T. Mang, and L. Y. Young. 1991. Degradation of toluene and m-xylene and transformation of o-xylene by denitrifying enrichment cultures. Appl. Environ. Microbiol. 57:450-454.
-
(1991)
Appl. Environ. Microbiol.
, vol.57
, pp. 450-454
-
-
Evans, P.J.1
Mang, D.T.2
Young, L.Y.3
-
14
-
-
0029653518
-
Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
-
Washington, D.C.
-
Fleischmann, R. D., M. D. Adams, O. White, R. A. Clayton, E. F. Kirkness, A. R. Kerlavage, C. J. Bult, J.-F. Tomb, B. A. Dougherty, J. M. Merrick, K. McKenney, G. Sutton, W. FitzHugh, C. Fields, J. D. Gocayne, J. Scott, R. Shirley, L.-I. Liu, A. Glodek, J. M. Kelley, J. F. Weidman, C. A. Phillips, T. Spriggs, E. Hedblom, M. D. Cotton, T. R. Utterback, M. C. Hanna, D. T. Nguyen, D. M. Saudek, R. C. Brandon, L. D. Fine, J. L. F. J. L. Fuhrmann, N. S. M. Geoghagen, C. L. Gnehn, L. A. McDonald, K. V. Small, C. M. Fraser, H. O. Smith, and J. C. Venter. 1995. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science (Washington, D.C.) 269:496-512.
-
(1995)
Science
, vol.269
, pp. 496-512
-
-
Fleischmann, R.D.1
Adams, M.D.2
White, O.3
Clayton, R.A.4
Kirkness, E.F.5
Kerlavage, A.R.6
Bult, C.J.7
Tomb, J.-F.8
Dougherty, B.A.9
Merrick, J.M.10
McKenney, K.11
Sutton, G.12
Fitzhugh, W.13
Fields, C.14
Gocayne, J.D.15
Scott, J.16
Shirley, R.17
Liu, L.-I.18
Glodek, A.19
Kelley, J.M.20
Weidman, J.F.21
Phillips, C.A.22
Spriggs, T.23
Hedblom, E.24
Cotton, M.D.25
Utterback, T.R.26
Hanna, M.C.27
Nguyen, D.T.28
Saudek, D.M.29
Brandon, R.C.30
Fine, L.D.31
Fuhrmann, J.L.F.J.L.32
Geoghagen, N.S.M.33
Gnehn, C.L.34
McDonald, L.A.35
Small, K.V.36
Fraser, C.M.37
Smith, H.O.38
Venter, J.C.39
more..
-
15
-
-
0027248519
-
Substrate induction and metabolite accumulation during anaerobic toluene utilization by the denitrifying strain T1
-
Frazer, A. C., W. Ling, and L. Y. Young. 1993. Substrate induction and metabolite accumulation during anaerobic toluene utilization by the denitrifying strain T1. Appl. Environ. Microbiol. 59:3157-3160.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 3157-3160
-
-
Frazer, A.C.1
Ling, W.2
Young, L.Y.3
-
16
-
-
0026620454
-
Interdependence of respiratory NO reduction and nitrite reduction revealed by mutagenesis of nirQ, a novel gene in the denitrification gene cluster of Pseudomonas stutzeri
-
Jüngst, A., and W. G. Zumft. 1992. Interdependence of respiratory NO reduction and nitrite reduction revealed by mutagenesis of nirQ, a novel gene in the denitrification gene cluster of Pseudomonas stutzeri. FEBS Lett. 314:308-314.
-
(1992)
FEBS Lett.
, vol.314
, pp. 308-314
-
-
Jüngst, A.1
Zumft, W.G.2
-
17
-
-
0032738035
-
Initial reactions in anaerobic oxidation of m-xylene by the denitrifying bacterium Azoarcus sp. strain T
-
Krieger, C. J., H. R. Beller, M. Reinhard, and A. M. Spormann. 1999. Initial reactions in anaerobic oxidation of m-xylene by the denitrifying bacterium Azoarcus sp. strain T. J. Bacteriol. 181:6403-6410.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 6403-6410
-
-
Krieger, C.J.1
Beller, H.R.2
Reinhard, M.3
Spormann, A.M.4
-
18
-
-
0031687366
-
A two-component system involved in regulation of anaerobic toluene metabolism in Thauera aromatica
-
Leuthner, B., and J. Heider. 1998. A two-component system involved in regulation of anaerobic toluene metabolism in Thauera aromatica. FEMS Microbiol. Lett. 166:35-41.
-
(1998)
FEMS Microbiol. Lett.
, vol.166
, pp. 35-41
-
-
Leuthner, B.1
Heider, J.2
-
19
-
-
0031980567
-
Biochemical and genetic characterization of benzylsuccinate synthase from Thauera aromatica: A new glycyl radical enzyme catalysing the first step in anaerobic toluene metabolism
-
Leuthner, B., C. Leutwein, H. Schulz, P. Hörth, W. Haehnel, E. Schiltz, H. Schägger, and J. Heider. 1998. Biochemical and genetic characterization of benzylsuccinate synthase from Thauera aromatica: a new glycyl radical enzyme catalysing the first step in anaerobic toluene metabolism. Mol. Microbiol. 28:615-628.
-
(1998)
Mol. Microbiol.
, vol.28
, pp. 615-628
-
-
Leuthner, B.1
Leutwein, C.2
Schulz, H.3
Hörth, P.4
Haehnel, W.5
Schiltz, E.6
Schägger, H.7
Heider, J.8
-
20
-
-
0026085514
-
Producing single-stranded DNA probes with the Taq DNA polymerase: A high yield protocol
-
Myerson, D. 1991. Producing single-stranded DNA probes with the Taq DNA polymerase: a high yield protocol. BioTechniques 10:35-38.
-
(1991)
BioTechniques
, vol.10
, pp. 35-38
-
-
Myerson, D.1
-
21
-
-
0029860342
-
Construction and analysis of a profile library characterizing groups of structurally known proteins
-
Ogiwara, A., I. Uchiyama, T. Takagi, and M. Kanehisa. 1996. Construction and analysis of a profile library characterizing groups of structurally known proteins. Protein Sci. 5:1991-1999.
-
(1996)
Protein Sci.
, vol.5
, pp. 1991-1999
-
-
Ogiwara, A.1
Uchiyama, I.2
Takagi, T.3
Kanehisa, M.4
-
22
-
-
0027159044
-
Effects of staining of RNA with ethidium bromide before electrophoresis on performance of Northern blots
-
Ogretmen, B., H. Ratajczak, A. Kats, B. C. Stark, and S. M. Gendel. 1993. Effects of staining of RNA with ethidium bromide before electrophoresis on performance of Northern blots. BioTechniques 14:932-935.
-
(1993)
BioTechniques
, vol.14
, pp. 932-935
-
-
Ogretmen, B.1
Ratajczak, H.2
Kats, A.3
Stark, B.C.4
Gendel, S.M.5
-
23
-
-
0024289499
-
Catalytic-site mapping of pyruvate formate lyase
-
Plaga, W., R. Frank, and J. Knappe. 1988. Catalytic-site mapping of pyruvate formate lyase. Eur. J. Biochem. 178:445-450.
-
(1988)
Eur. J. Biochem.
, vol.178
, pp. 445-450
-
-
Plaga, W.1
Frank, R.2
Knappe, J.3
-
24
-
-
0023776034
-
Primary structure of Escherichia coli pyruvate formate-lyase and pyruvate formate-lyase activating enzyme deduced from the DNA nucleotide sequences
-
Rödel, W., W. Plaga, R. Frank, and J. Knappe. 1988. Primary structure of Escherichia coli pyruvate formate-lyase and pyruvate formate-lyase activating enzyme deduced from the DNA nucleotide sequences. Eur. J. Biochem. 177: 153-158.
-
(1988)
Eur. J. Biochem.
, vol.177
, pp. 153-158
-
-
Rödel, W.1
Plaga, W.2
Frank, R.3
Knappe, J.4
-
25
-
-
0032512542
-
Genomic DNA cloning of the region encoding nitric oxide reductase in Paracoccus halodenitrificans and a structure model relevant to cytochrome oxidase
-
Sakurai, N., and T. Sakurai. 1998. Genomic DNA cloning of the region encoding nitric oxide reductase in Paracoccus halodenitrificans and a structure model relevant to cytochrome oxidase. Biochem. Biophys. Res. Commun. 243:400-406.
-
(1998)
Biochem. Biophys. Res. Commun.
, vol.243
, pp. 400-406
-
-
Sakurai, N.1
Sakurai, T.2
-
27
-
-
0026009578
-
Anaerobic degradation of toluene by pure cultures of denitrifying bacteria
-
Schocher, R. J., B. Seyfried, F. Vazquez, and J. Zeyer. 1991. Anaerobic degradation of toluene by pure cultures of denitrifying bacteria. Arch. Microbiol. 157:7-12.
-
(1991)
Arch. Microbiol.
, vol.157
, pp. 7-12
-
-
Schocher, R.J.1
Seyfried, B.2
Vazquez, F.3
Zeyer, J.4
-
28
-
-
0031856287
-
Identification of denitrifier strain T1 as Thauera aromatica and proposal for emendation of the genus Thauera definition
-
Song, B., L. Y. Young, and N. J. Palleroni. 1998. Identification of denitrifier strain T1 as Thauera aromatica and proposal for emendation of the genus Thauera definition. Int. J. Syst. Bacteriol. 48:889-894.
-
(1998)
Int. J. Syst. Bacteriol.
, vol.48
, pp. 889-894
-
-
Song, B.1
Young, L.Y.2
Palleroni, N.J.3
-
29
-
-
0026547534
-
The free radical in pyruvate formate-lyase is located on glycine-734
-
Volker-Wagner, A. F., M. Frey, F. A. Neugebauer, W. Schäfer, and J. Knappe. 1992. The free radical in pyruvate formate-lyase is located on glycine-734. Proc. Natl. Acad. Sci. USA 89:996-1000.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 996-1000
-
-
Volker-Wagner, A.F.1
Frey, M.2
Neugebauer, F.A.3
Schäfer, W.4
Knappe, J.5
-
30
-
-
0029882154
-
Molecular characterization of the genes encoding pyruvate formate-lyase and its activating enzyme of Clostridium pasteurianum
-
Weidner, G., and G. Sawers. 1996. Molecular characterization of the genes encoding pyruvate formate-lyase and its activating enzyme of Clostridium pasteurianum. J. Bacteriol. 178:2440-2444.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 2440-2444
-
-
Weidner, G.1
Sawers, G.2
|