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Volumn 38, Issue 4, 2000, Pages 414-427

Monte Carlo-Minimized energy profile of estradiol in the ligand- binding tunnel of 17β-hydroxysteroid dehydrogenase: Atomic mechanisms of steroid recognition

Author keywords

Breast cancer; Computer simulation; Drug design; Molecular modeling; Steroid hormones

Indexed keywords

ESTRADIOL; TESTOSTERONE 17BETA DEHYDROGENASE;

EID: 0034003769     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0134(20000301)38:4<414::AID-PROT7>3.0.CO;2-X     Document Type: Article
Times cited : (23)

References (40)
  • 1
    • 0023284318 scopus 로고
    • Estrogenic regulation of growth and polypeptide growth factor secretion in human breast carcinoma
    • Dickson RB, Lippman ME. Estrogenic regulation of growth and polypeptide growth factor secretion in human breast carcinoma. Endocr Rev 1987;8:29-43.
    • (1987) Endocr Rev , vol.8 , pp. 29-43
    • Dickson, R.B.1    Lippman, M.E.2
  • 2
    • 0018254898 scopus 로고
    • Nuclear mechanisms of estrogen action. Effects of estradiol and anti-estrogens on estrogen receptors and nuclear receptor processing
    • Horwitz KB, McGuire WL. Nuclear mechanisms of estrogen action. Effects of estradiol and anti-estrogens on estrogen receptors and nuclear receptor processing. J Biol Chem 1978;253:8185-8191.
    • (1978) J Biol Chem , vol.253 , pp. 8185-8191
    • Horwitz, K.B.1    McGuire, W.L.2
  • 3
    • 0029998812 scopus 로고    scopus 로고
    • 17β-Hydrosteroid dehydrogenase: Inhibitors and inhibitor design
    • Penning TM. 17β-Hydrosteroid dehydrogenase: inhibitors and inhibitor design. Endocr Rel Cancer 1996;3:41-56.
    • (1996) Endocr Rel Cancer , vol.3 , pp. 41-56
    • Penning, T.M.1
  • 4
    • 0025883535 scopus 로고
    • Characteristics of short chain dehydrogenase and related enzymes
    • Persson B, Krook M, Jornvall H. Characteristics of short chain dehydrogenase and related enzymes. Eur J Biochem 1991;200:537-543.
    • (1991) Eur J Biochem , vol.200 , pp. 537-543
    • Persson, B.1    Krook, M.2    Jornvall, H.3
  • 5
    • 0026737624 scopus 로고
    • Subunit identity of the dimeric 17β-hydrosteroid dehydrogenase from human placenta
    • Lin S-X, Yang F, Jin J-Z, et al. Subunit identity of the dimeric 17β-hydrosteroid dehydrogenase from human placenta. J Biol Chem 1992;267:16182-16187.
    • (1992) J Biol Chem , vol.267 , pp. 16182-16187
    • Lin, S.-X.1    Yang, F.2    Jin, J.-Z.3
  • 7
    • 0029644733 scopus 로고
    • Structure of human estrogenic 17 beta-hydroxysteroid dehydrogenase at 2.20 Å resolution
    • Ghosh D, Pletnev VZ, Zhu D-W, et al. Structure of human estrogenic 17 beta-hydroxysteroid dehydrogenase at 2.20 Å resolution. Structure 1995;3:503-513.
    • (1995) Structure , vol.3 , pp. 503-513
    • Ghosh, D.1    Pletnev, V.Z.2    Zhu, D.-W.3
  • 8
    • 0029761692 scopus 로고    scopus 로고
    • Crystal structure of human estrogenic 17β-hydroxysteroid dehydrogenase complexed with 17β-estradiol
    • Azzi A, Rehse PH, Zhu D-W, Campbell RL, Labrie F, Lin S-X. Crystal structure of human estrogenic 17β-hydroxysteroid dehydrogenase complexed with 17β-estradiol. Nature Struct Biol 1996; 3:665-668.
    • (1996) Nature Struct Biol , vol.3 , pp. 665-668
    • Azzi, A.1    Rehse, P.H.2    Zhu, D.-W.3    Campbell, R.L.4    Labrie, F.5    Lin, S.-X.6
  • 10
    • 0033532388 scopus 로고    scopus 로고
    • Human estrogenic 17β-hydroxysteroid dehydrogenase: Predominance of estrone reduction and its induction by NADPH
    • Jin J-Z, Lin S-X. Human estrogenic 17β-hydroxysteroid dehydrogenase: predominance of estrone reduction and its induction by NADPH. Biochem Biophys Res Commun 1999;0259:489-493.
    • (1999) Biochem Biophys Res Commun , vol.259 , pp. 489-493
    • Jin, J.-Z.1    Lin, S.-X.2
  • 11
    • 0000003059 scopus 로고    scopus 로고
    • Free energy calculation methods: A theoretical and empirical comparison of numerical errors and a new method qualitative estimates of free energy changes
    • Radmer RJ, Kollman PA. Free energy calculation methods: a theoretical and empirical comparison of numerical errors and a new method qualitative estimates of free energy changes. J Comput Chem 1997;18:902-919.
    • (1997) J Comput Chem , vol.18 , pp. 902-919
    • Radmer, R.J.1    Kollman, P.A.2
  • 12
    • 0029817834 scopus 로고    scopus 로고
    • Highly potent, selective, and low cost bis-tetrahydroaminacrine inhibitors of acetylcholinesterase. Steps toward novel drugs for treating Alzheimer's disease
    • Pang YP, Quiram P, Jelacic T, Hong F, Brimijoin S. Highly potent, selective, and low cost bis-tetrahydroaminacrine inhibitors of acetylcholinesterase. Steps toward novel drugs for treating Alzheimer's disease. J Biol Chem 1996;271:23646-23649.
    • (1996) J Biol Chem , vol.271 , pp. 23646-23649
    • Pang, Y.P.1    Quiram, P.2    Jelacic, T.3    Hong, F.4    Brimijoin, S.5
  • 13
    • 0029662318 scopus 로고    scopus 로고
    • The simulated binding of (+/-)-2,3-dihydro-5,6-dimethoxy-2-[[1-(phenylmethyl)-4-piperidinyl] methyl]-1H-inden-1-one hydrochloride (E2020) and related inhibitors to free and acylated acetylcholmesterases and corresponding structure-activity analyses
    • Inoue A, Kawai T, Wakita M, Iimura Y, Sugimoto H, Kawakami Y. The simulated binding of (+/-)-2,3-dihydro-5,6-dimethoxy-2-[[1-(phenylmethyl)-4-piperidinyl] methyl]-1H-inden-1-one hydrochloride (E2020) and related inhibitors to free and acylated acetylcholmesterases and corresponding structure-activity analyses. J Med Chem 1996;39:4460-4470.
    • (1996) J Med Chem , vol.39 , pp. 4460-4470
    • Inoue, A.1    Kawai, T.2    Wakita, M.3    Iimura, Y.4    Sugimoto, H.5    Kawakami, Y.6
  • 15
    • 84986492468 scopus 로고
    • Flexible ligand docking without parameter adjustment across four ligand-receptor complexes
    • Clark KP, Ajay J. Flexible ligand docking without parameter adjustment across four ligand-receptor complexes. J Comp Chem 1995;16:1210-1226.
    • (1995) J Comp Chem , vol.16 , pp. 1210-1226
    • Clark, K.P.1    Ajay, J.2
  • 16
    • 0029062909 scopus 로고
    • Ligand-protein docking and rational drug design
    • Lybrand TP. Ligand-protein docking and rational drug design. Curr Opin Struct Biol 1995;5:224-228.
    • (1995) Curr Opin Struct Biol , vol.5 , pp. 224-228
    • Lybrand, T.P.1
  • 18
    • 0023430366 scopus 로고
    • Monte Carlo-minimization approach to the multiple-minima problem in protein folding
    • Li Z, Scheraga HA. Monte Carlo-minimization approach to the multiple-minima problem in protein folding. Proc Natl Acad Sci USA 1987;84:6611-6615.
    • (1987) Proc Natl Acad Sci USA , vol.84 , pp. 6611-6615
    • Li, Z.1    Scheraga, H.A.2
  • 19
    • 0026681839 scopus 로고
    • Optimal protocol and trajectory visualization for conformational searches of peptides and proteins
    • Abagyan R, Argos P. Optimal protocol and trajectory visualization for conformational searches of peptides and proteins. J Mol Biol 1992;225:519-532.
    • (1992) J Mol Biol , vol.225 , pp. 519-532
    • Abagyan, R.1    Argos, P.2
  • 20
    • 0027955787 scopus 로고
    • Biased probability Monte Carlo conformational searches and electrostatic calculations for peptides and proteins
    • Abagyan R, Totrov M. Biased probability Monte Carlo conformational searches and electrostatic calculations for peptides and proteins. J Mol Biol 1994;235:983-1002.
    • (1994) J Mol Biol , vol.235 , pp. 983-1002
    • Abagyan, R.1    Totrov, M.2
  • 21
    • 0026716409 scopus 로고
    • Monte Carlo minimization with thermalization for global optimization of polypeptide conformations in cartesian coordinate space
    • Caflisch A, Niederer P, Anliker M. Monte Carlo minimization with thermalization for global optimization of polypeptide conformations in cartesian coordinate space. Proteins 1992;14:102-109.
    • (1992) Proteins , vol.14 , pp. 102-109
    • Caflisch, A.1    Niederer, P.2    Anliker, M.3
  • 23
    • 0001246354 scopus 로고    scopus 로고
    • Docking by Monte Carlo minimization with a solvation correction: Application to an FKBP-substrate complex
    • Caflisch A, Fischer S, Karplus M. Docking by Monte Carlo minimization with a solvation correction: application to an FKBP-substrate complex. J Comput Chem 1997;18:723-743.
    • (1997) J Comput Chem , vol.18 , pp. 723-743
    • Caflisch, A.1    Fischer, S.2    Karplus, M.3
  • 24
    • 0031020376 scopus 로고    scopus 로고
    • Computation of the binding of fully flexible peptides to proteins with flexible side chains
    • Desmet J, Wilson I.A, Joniau M, De Maeyer M, Lasters I. Computation of the binding of fully flexible peptides to proteins with flexible side chains. FASEB J 1997;11:164-172.
    • (1997) FASEB J , vol.11 , pp. 164-172
    • Desmet, J.1    Wilson, I.A.2    Joniau, M.3    De Maeyer, M.4    Lasters, I.5
  • 26
    • 0038176890 scopus 로고
    • A Monte Carlo simulated annealing approach to optimization over continuous variables
    • Vanderblit D, Louie SG. A Monte Carlo simulated annealing approach to optimization over continuous variables. J Comput Phys 1984;56:256-271.
    • (1984) J Comput Phys , vol.56 , pp. 256-271
    • Vanderblit, D.1    Louie, S.G.2
  • 27
    • 0000374885 scopus 로고
    • Calculations of conformations of polypeptides
    • Scheraga HA. Calculations of conformations of polypeptides. Adv Phys Org Chem 1968;6:103-184.
    • (1968) Adv Phys Org Chem , vol.6 , pp. 103-184
    • Scheraga, H.A.1
  • 28
    • 0001934359 scopus 로고
    • Vector method for calculating derivatives of energy of atom-atom interactions of complex molecules according to generalized coordinates
    • Zhorov BS. Vector method for calculating derivatives of energy of atom-atom interactions of complex molecules according to generalized coordinates. J Struct Chem 1981;22:4-8.
    • (1981) J Struct Chem , vol.22 , pp. 4-8
    • Zhorov, B.S.1
  • 29
    • 0343743256 scopus 로고
    • Vector method for calculating derivatives of the energy deformation of valence angles and torsion energy of complex molecules according to generalized coordinates
    • Zhorov BS. Vector method for calculating derivatives of the energy deformation of valence angles and torsion energy of complex molecules according to generalized coordinates. J Struct Chem 1983;23:649-655.
    • (1983) J Struct Chem , vol.23 , pp. 649-655
    • Zhorov, B.S.1
  • 30
    • 0024609784 scopus 로고
    • New metrology for computer-aided modeling of biomolecular structure and dynamics. 1. Non-cyclic structures
    • Mazur AK, Abagyan RA. New metrology for computer-aided modeling of biomolecular structure and dynamics. 1. Non-cyclic structures. J Biomol Struct Dyn 1989;6:815-832.
    • (1989) J Biomol Struct Dyn , vol.6 , pp. 815-832
    • Mazur, A.K.1    Abagyan, R.A.2
  • 31
    • 0028171884 scopus 로고
    • 2+-bound conformations of morphine and Met-enkephalin: A computational study
    • 2+-bound conformations of morphine and Met-enkephalin: a computational study. FEBS Lett 1994;354:131-134.
    • (1994) FEBS Lett , vol.354 , pp. 131-134
    • Zhorov, B.S.1    Ananthanarayanan, V.S.2
  • 32
    • 5944250450 scopus 로고
    • Energy parameters in polypeptides. VII. Geometric parameters, partial atomic charges, nonbonded interactions, hydrogen bond interactions, and intrinsic torsional potentials of the naturally occurring amino acids
    • Momany FA, McGuire RF, Burgess AW, Scheraga HA. Energy parameters in polypeptides. VII. Geometric parameters, partial atomic charges, nonbonded interactions, hydrogen bond interactions, and intrinsic torsional potentials of the naturally occurring amino acids. J Phys Chem 1975;79:2361-2381.
    • (1975) J Phys Chem , vol.79 , pp. 2361-2381
    • Momany, F.A.1    McGuire, R.F.2    Burgess, A.W.3    Scheraga, H.A.4
  • 34
    • 26744440015 scopus 로고
    • Structural and energetic effects of truncating long ranged interactions in ionic polar fluids
    • Brooks CL, Pettitt BM, Karplus M. Structural and energetic effects of truncating long ranged interactions in ionic polar fluids. J Chem Phys 1985;83:5897-5908.
    • (1985) J Chem Phys , vol.83 , pp. 5897-5908
    • Brooks, C.L.1    Pettitt, B.M.2    Karplus, M.3
  • 35
    • 0001643360 scopus 로고
    • Structure and free energy of complex thermodynamic systems
    • Li Z, Scheraga HA. Structure and free energy of complex thermodynamic systems. J Mol Struct 1988;179:333-352.
    • (1988) J Mol Struct , vol.179 , pp. 333-352
    • Li, Z.1    Scheraga, H.A.2
  • 37
    • 0017435119 scopus 로고
    • Conformational analysis of the 20 naturally occurring amino acid residues using ECEPP
    • Zimmerman SS, Pottle MS, Nemethy G, Scheraga HA. Conformational analysis of the 20 naturally occurring amino acid residues using ECEPP. Macromolecules 1977;10:1-9.
    • (1977) Macromolecules , vol.10 , pp. 1-9
    • Zimmerman, S.S.1    Pottle, M.S.2    Nemethy, G.3    Scheraga, H.A.4
  • 38
    • 0028322347 scopus 로고
    • Molecular modeling of steroidal estrogens: Novel conformations and their role in biological activity
    • Wiese TE, Brooks SC. Molecular modeling of steroidal estrogens: novel conformations and their role in biological activity. J Steroid Biochem Mol Biol 1994;50:61-73.
    • (1994) J Steroid Biochem Mol Biol , vol.50 , pp. 61-73
    • Wiese, T.E.1    Brooks, S.C.2
  • 40
    • 0015217629 scopus 로고
    • Reaction mechanism of 17β-estradiol dehydrogenase determined by equilibrium rate exchange
    • Betz G. Reaction mechanism of 17β-estradiol dehydrogenase determined by equilibrium rate exchange. J Biol Chem 1971;246:2063-2068.
    • (1971) J Biol Chem , vol.246 , pp. 2063-2068
    • Betz, G.1


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