Dominant role of host selective pressure in driving hepatitis C virus evolution in perinatal infection

Journal of Virology

Volumn 74, Issue 9, 2000, Pages 4327-4334

  Manzin, Aldo ^a   Solforosi, Laura ^a   Debiaggi, Maurizia ^b   Zara, Francesca ^b   Tanzi, Elisabetta ^c   Romanò, Luisa ^c   Zanetti, Alessandro R ^c   Clementi, Massimo ^d  

^a UNIVERSITÀ POLITECNICA DELLE MARCHE   (Italy)

^b UNIVERSITY OF PAVIA   (Italy)

^c UNIVERSITY OF MILAN   (Italy)

^d UNIVERSITY OF TRIESTE   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; CASE REPORT; EVOLUTION; HEPATITIS C VIRUS; HUMAN; MODEL; NEWBORN; NUCLEOTIDE SEQUENCE; PERINATAL INFECTION; PHYLOGENY; PRIORITY JOURNAL; VIRUS PATHOGENESIS; VIRUS REPLICATION; VIRUS TRANSMISSION;

AMINO ACID SEQUENCE; BASE SEQUENCE; DISEASE TRANSMISSION, VERTICAL; DNA, VIRAL; EVOLUTION, MOLECULAR; FEMALE; HEPACIVIRUS; HEPATITIS C; HUMANS; INFANT, NEWBORN; MOLECULAR SEQUENCE DATA; MOTHERS; PERINATAL CARE; PHYLOGENY; PREGNANCY; PREGNANCY COMPLICATIONS, INFECTIOUS; RNA, VIRAL;

EID: 0033999990     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.74.9.4327-4334.2000     Document Type: Article

References (46)

1. Alter, M. J., H. S. Margolis, K. Krawczynski, F. N. Judson, A. Mares, W. J. Alexander, P. Y. Hu, J. K. Miller, M. A. Gerber, R. E. Sampliner, E. Meeks, and M. J. Beach. 1992. The natural history of community acquired hepatitis C in the United States. N. Engl. J. Med. 327:1899-1905.
2. Bradley, D., K. McCaustland, K. Krawczynski, J. Spelbring, C. Humphrey, and E. H. Cook. 1991. Hepatitis C virus: buoyant density of the factor VIII-derived isolate in sucrose. J. Med. Virol. 34:205-208.
3. Chang, M. H. 1996. Mother-to-infant transmission of hepatitis C virus. Clin. Investig. Med. 19:368-372.
4. Chomczynski, P., and N. Sacchi. 1987. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 161:156-159.
5. Choo, Q.-L., K. H. Richman, J. H. Han, K. Berger, C. Lee, C. Dong, C. Gallegos, D. Corr, A. Medina-Selby, P. J. Barr, A. J. Weiner, D. W. Bradley, G. Kuo, and M. Houghton. 1991. Genetic organization and diversity of the hepatitis C virus. Proc. Natl. Acad. Sci. USA 88:2451-2455.
6. Dienstag, J. L. 1997. Sexual and perinatal transmission of hepatitis C. Hepatology 26(Suppl. 1):66S-70S.
7. Farci, P., J. Bukb, and R. H. Purcell. 1997. The quasispecies of hepatitis C virus and the host immune response. Springer Semin. Immunopathol. 19: 5-26.
8. Farci, P., A. Shimoda, D. Wong, T. Cabezon, D. De Gioannis, A. Strazzera, Y. Shimizu, M. Shapiro, M. J. Alter, and R. H. Purcell. 1996. Prevention of the hepatitis C virus infection in chimpanzees by hyperimmune serum against the hypervariable region 1 of the envelope 2 protein. Proc. Natl. Acad. Sci. USA 93:15394-15399.
9. Felsenstein, J. 1993. Phylogeny inference package, version 3.5. Department of Genetics, University of Washington, Seattle.
10. Gojobori, T., E. N. Morijama, and M. Kimura. 1990. Molecular clock of viral evolution and the neutral theory. Proc. Natl. Acad. Sci. USA 87:10015-10018.
11. Goldman, N., and Z. Yang. 1994. A codon-based model of nucleotide sub-stitution for protein-coding DNA sequences. Mol. Biol. Evol. 11:725-734.
12. Higashi, Y., S. Kakumu, K. Yoshioka, T. Wakita, M. Mizokami, K. Ohba, Y. Ito, T. Ishikawa, M. Takayanagi, and Y. Nagai. 1993. Dynamics of genome change in the E2/NS1 region of hepatitis C virus in vivo. Virology 197: 659-668.
13. Hijikata, M., N. Kato, Y. Ootsuyama, M. Nakagawa, S. Ohkoshi, and K. Shimotono. 1991. Hypervariable regions in the putative glycoprotein of hepatitis C virus. Biochem. Biophys. Res. Commun. 175:220-228.
14. Kanto, T., N. Hayashi, T. Takeara, H. Hagiwara, E. Mita, M. Naito, A. Kasahra, H. Fusamoto, and T. Kamada. 1995. Density analysis of hepatitis C virus particle population of infected hosts: implications for virus neutralization and persistence. J. Hepatol. 22:440-448.
15. Kao, J. H., P.-J. Chen, M.-J. Lai, T. H. Wang, and D. S. Chen. 1995. Quasispecies of hepatitis C virus and genetic drift of the hypervariable region in chronic type C hepatitis. J. Infect. Dis. 172:261-264.
16. Kato, N., Y. Ootsuyama, H. Sekiya, S. Ohkoshi, T. Nazakawa, M. Hijikata, and K. Shimotono. 1994. Genetic drift in hypervariable region 1 of the viral genome in persistent HCV infection. J. Virol. 68:4776-4784.
17. Kato, N., Y. Ootsuyama, T. Tanaka, M. Nakagawa, T. Nakazawa, K. Muraiso, S. Ohkoshi, M. Hijikata, and K. Shimotono. 1992. Marked sequence diversity in the putative envelope proteins of hepatitis C viruses. Virus Res. 22:107-123.
18. Kimura, M. 1980. A simple method for estimating the evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
19. Kiyosawa, K., T. Sodeyama, E. Tanaka, Y. Gibo, K. Yoshizawa, Y. Nakano, S. Furuta, Y. Akahane, K. Nishioka, and R. H. Purcell. 1990. Interrelationship of blood transfusion, non-A, non-B hepatitis and hepatocellular carcinoma: analysis by detection of antibody to hepatitis C virus. Hepatology 12: 671-675.
20. Kudo, T., Y. Yanase, M. Oshiro, M. Yamamoto, M. Morita, M. Shibata, and T. Morishima. 1997. Analysis of mother-to-infant transmission of hepatitis C virus: quasispecies nature and buoyant densities of maternal virus population. J. Med. Virol. 51:225-230.
21. Ina, Y. 1995. New methods for estimating the numbers of synonymous and nonsynonymous substitutions. J. Mol. Evol. 40:190-226.
22. Lawal, Z., J. Petrik, V.-S. Wong, G. J. M. Alexander, and J. P. Allain. 1997. Hepatitis C virus genomic variability in untreated and immunocompromised patients. Virology 228:107-111.
23. Lin, H. H., J. H. Kao, H. Y. Hsu, Y. H. Ni, S. H. Yeh, L. H. Hwang, M. H. Chang, S. C. Hwang, P. J. Chen, and D. S. Chen. 1994. Possible role of high-titer maternal viremia in perinatal transmission of hepatitis C virus. J. Infect. Dis. 169:638-641.
24. Manzin, A., P. Bagnarelli, S. Menzo, F. Giostra, M. Brugia, R. Francesconi, F. B. Bianchi, and M. Clementi. 1994. Quantitation of hepatitis C virus genome molecules in plasma samples. J. Clin. Microbiol. 32:1939-1944.
25. Manzin, A., L. Solforosi, E. Petrelli, G. Macarri, G. Tosone, M. Piazza, and M. Clementi. 1998. Evolution of the hypervariable region 1 (HVR-1) of hepatitis C virus in primary infection. J. Virol. 72:6271-6276.
26. Martell, M., J. I. Esteban, J. Quer, J. Genesca, A. Weiner, R. Esteban, J. Guardia, and J. Gomez. 1992. Hepatitis C virus (HCV) circulates as a population of different but closely related genomes: quasispecies nature of HCV genome distribution. J. Virol. 66:3225-3229.
27. McAllister, J., C. Casino, F. Davidson, J. Power, E. Lawlor, P. L. Yap, P. Simmonds, and D. B. Smith. 1998. Long-term evolution of the hypervariable region of hepatitis C virus in a common-source-infected cohort. J. Virol. 72: 4893-4905.
28. Nei, M., and T. Gojobori. 1986. Simple methods for estimating the number of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3:418-426.
29. Neumann, A. U., N. P. Lam, H. Dahari, D. R. Gretch, T. E. Wiley, T. J. Layden, and A. S. Perelson. 1998. Hepatitis C viral dynamics in vivo and the antiviral efficacy of interferon-alpha therapy. Science 282:103-107.
30. Ni, Y. H., M. H. Chang, P. J. Chen, H. H. Lin, and H. Y. Hsu. 1997. Evolution of hepatitis C virus quasispecies in mothers and infants infected through mother-to-infant transmission. J. Hepatol. 26:967-974.
31. Odeberg, J., Z. Yun, A. Sönneborg, K. Bijøro, M. Uhlén, and J. Lunderberg. 1997. Variation of hepatitis C hypervariable region 1 in immunocompromised patients. J. Infect. Dis. 175:938-943.
32. Okamoto, H., Y. Sugiyama, S. Okada, K. Kurai, Y. Akahane, Y. Sugai, T. Tanaka, K. Sato, F. Tsuda, Y. Miyakawa, and M. Mayumi. 1992. Typing hepatitis C virus by polymerase chain reaction with type-specific primers: application to clinical surveys and tracing infectious sources. J. Gen. Virol. 73:673-679.
33. Shimizu, Y. K., M. Hijikata, A. Iwamoto, M. J. Alter, R. H. Purcell, and H. Yoshikura. 1994. Neutralizing antibodies against hepatitis C virus and the emergence of neutralization escape mutant viruses. J. Virol. 68:1494-1500.
34. Silini, E., F. Bono, A. Cerino, V. Piazza, E. Solda, and M. U. Mondelli. 1993. Virological features of hepatitis C virus infections in hemodialysis patients. J. Clin. Microbiol. 31:2913-2917.
35. Simmonds, P. 1995. Variability of hepatitis C virus. Hepatology 21:570-583.
36. Temin, H. M. 1993. Retrovirus variation and reverse transcription: abnormal strand transfers result in retrovirus genetic variation. Proc. Natl. Acad. Sci. USA 90:6900-6903.
37. Thaler, M. M., C. K. Park, D. V. Landers, D. W. Ware, M. Hougton, G. Veereman-Vauters, R. L. Sweet, and J. H. Hah. 1991. Vertical transmission of hepatitis C virus. Lancet 118:17-18.
38. Tong, M. J., N. S. El-Farra, A. R. Reikes, and R. L. Co. 1995. Clinical outcomes after transfusion-associated hepatitis C. N. Engl. J. Med. 332: 1463-1466.
39. van Doom, L.-J., I. Capriles, G. Maertens, R. DeLeys, K. Murray, T. Kos, H. Schellekens, and W. Quint. 1995. Sequence evolution of the hypervariable region in the putative envelope region E2/NS1 of hepatitis C virus is correlated with specific humoral immune response. J. Virol. 69:773-778.
40. Wejstal, R., A. Widell, A. S. Mansson, S. Hermodsson, and G. Norkrans. 1992. Mother-to-infant transmission of hepatitis C virus. Ann. Intern. Med. 117:887-890.
41. Wolinsky, S. M., B. T. M. Korber, A. U. Neuman, M. Daniels, K. J. Kunstman, A. J. Whetsell, M. R. Furtado, Y. Cao, D. D. Ho, J. T. Safrit, and R. A. Koup. 1996. Adaptive evolution of human immunodeficiency virus type 1 during the natural course of infection. Science 272:537-542.
42. Yamaguchi, K., E. Tanaka, K. Higashi, K. Kiyosawa, A. Matsumoto, S. Furuta, A. Hasegawa, S. Tanaka, and M. Kohara. 1994. Adaptation of hepatitis C virus for persistent infection in patients with acute hepatitis. Gastroenterology 106:1344-1348.
43. Zanetti, A. R., E. Tanzi, S. Paccagnini, N. Principi, G. Pizzocolo, M. L. Caccamo, E. D'Amico, G. Cambie, and L. Vecchi. 1995. Mother-to-infant transmission of hepatitis C virus. Lombardy study group on vertical HCV transmission. Lancet 345:289-291.
44. Zanetti, A. R., E. Tanzi, and M. L. Lewell. 1999. Mother-to-infant transmission of hepatitis C virus. J. Hepatol. 31(Suppl):96-100.
45. Zibert, A., H. Meisel, W. Kraas, A. Schulz, G. Jung, and M. Roggendorf. 1997. Early antibody response against hypervariable region 1 is associated with acute self-limiting infections of hepatitis C virus. Hepatology 25:1245-1249.
46. Zibert, A., E. Schreier, and M. Roggendorf. 1995. Antibodies in human sera specific to hypervariable region 1 of hepatitis C virus can block viral attachment. Virology 208:653-661.