Detection of amplification of a chromosomal fragment at 6p21 including the cyclin D3 gene in a glioblastoma cell line by arbitrarily primed polymerase chain reaction

International Journal of Cancer

Volumn 85, Issue 1, 2000, Pages 113-116

  Kuchiki, Hideo ^a,b   Saino, Makoto ^a,b   Nobukuni, Takahiro ^a   Yasuda, Jun ^a   Maruyama, Tomoko ^a   Kayama, Takamasa ^b   Murakami, Yoshinori ^a   Sekiya, Takao ^a  

^a NATIONAL CANCER CENTER RESEARCH INSTITUTE   (Japan)

^b YAMAGATA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CYCLIN D3;

ARTICLE; BASE PAIRING; CANCER CELL CULTURE; CHROMOSOME 6P; DNA DETERMINATION; DNA FINGERPRINTING; GENE AMPLIFICATION; GENE OVEREXPRESSION; GLIOBLASTOMA; HUMAN; HUMAN CELL; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SOUTHERN BLOTTING;

BLOTTING, NORTHERN; BLOTTING, WESTERN; CHROMOSOME MAPPING; CHROMOSOMES, HUMAN, PAIR 6; CYCLINS; DNA FINGERPRINTING; GENE AMPLIFICATION; GENE EXPRESSION; GLIOBLASTOMA; HUMANS; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; TUMOR CELLS, CULTURED;

EID: 0033990570     PISSN: 00207136     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0215(20000101)85:1<113::AID-IJC20>3.0.CO;2-3     Document Type: Article

References (30)

1. AKIYAMA, N., SASAKI, H., ISHIZUKA, T., KISHI, T., SAKAMOTO, H., ONDA, M., HIRAI, H., YAZAKI, Y., SUGIMURA, T. and TERADA, M., Isolation of a candidate gene, cab1, for cholesterol transport to mitochondria from the c-erbb-2 amplicon by a modified cDNA selection method. Cancer Res., 57, 3548-3553 (1997).
2. BUCKLEY, M.F., SWEENEY, K.J., HAMILTON, J.A., SINI, R.L., MANNING, D.L., NICHOLSON, R.I., DEFAZIO, A., WATTS, C.K., MUSGROVE, E.A. and SUTHERLAND, R.L., Expression and amplification of cyclin genes in human breast cancer. Oncogene, 8, 2127-2133 (1993).
3. BURNETTE, W.N., "Western blotting": electrophoretic transfer of proteins from sodium-dodecyl-sulfate-polyacrylamide gels to unmodified nitrocellulose and radiographic detection with antibody and radio-iodinated protein A. Anal. Biochem., 112, 195-203 (1981).
4. COLLINS, V.P. and JAMES, C.D., Genetic alterations in gliomas. J. Neurooncol., 71, 37-38 (1995).
5. COSTELLO, J.F., PLASS, C., ARAP, W., CHAPMAN, V.M., HELD, W.A., BERGER, M.S., SU HUANG, H.J. and CAVENEE, W.K., Cyclin-dependent kinase 6 (CDK6) amplification in human gliomas identified using two-dimensional separation of genomic DNA. Cancer Res., 57, 1250-1254 (1997).
6. GRANT, R., LIANG, B.C., PAGE, M.A., CRANE, D.L., GREENBERG, H.S. and JUNCK, L., Age influences chemotherapy response in astrocytomas. Neurology, 45, 929-933 (1995).
7. HE, J., ALLEN, J.R., COLLINS, V.P., ALLALUNIS-TURNER, M.J., BODBOUT, R., DAY, R.S., III and JAMES, C.D., CDK4 amplification is an alternative mechanism to p16-gene homozygous deletion in glioma cell lines. Cancer Res., 54, 5804-5807 (1994).
8. HUNTER, S.B., ABBOTT, K., VARMA, V.A., OLSON, J.J., BARNETT, D.W. and JAMES, C.D., Reliability of differential PCR for the detection of EGFR and mdm2 gene amplification in DNA extracted from FFPE glioma tissue. J. Neuropathol. exp. Neurol., 54, 57-64 (1995).
9. IGAKI, H., SASAKI, H., KISHI, T., SAKAMOTO, H., TACHIMORI, Y., KATO, H., WATANABE, H., SUGIMURA, T. and TERADA, M., Highly frequent homozygous deletion of the p16 gene in esophageal-cancer cell lines. Biochem. biophys. Res. Commun., 203, 1090-1095 (1994).
10. INABA, T., MATSUSHIME, H., VALENTINE, M., ROUSSEL, M.F., SHERR, C.J. and LOOK, A.T., Genomic organization, chromosomal localization and independent expression of human cyclin-D genes. Genomics, 13, 565-574 (1992).
11. JIANG, W., ZHANG, Y.J., KAHN, S.M., HOLLSTEIN, M.C., SANTELLA, R.M., LU, S.H., HARRIS, C.C., MONTESANO, R. and WEINSTEIN, I.B., Altered expression of the cyclin-D1 and retinoblastoma genes in human esophageal cancer. Proc. nat. Acad. Sci. (Wash.), 90, 9026-9030 (1993).
12. KUMABE, T., SOHMA, Y., KAYAMA, T., YOSHIMOTO, T. and YAMAMOTO, T., Amplification of alpha-platelet-derived growth-factor-receptor gene lacking an exon coding for a portion of the extracellular region in a primary brain tumor of glial origin. Oncogene, 7, 627-633 (1992).
13. MOTOKURA, T., KEYOMARSI, K., KRONENBERG, H.M. and ARNOLD, A., Cloning and characterization of human cyclin D3, a cDNA closely related in sequence to the PRAD1/cyclin D1 proto-oncogene. J. biol. Chem., 267, 20412-20415 (1992).
14. MURAKAMI, Y. and SEKIYA, T., Accumulation of genetic alterations and their significance in each primary human cancer and cell line. Mutation Res.. 400, 421-437 (1998).
15. OKAZAKI, T., TAKITA, J., KOHNO, T., HANDA, H. and YOKOTA, J., Detection of amplified genomic sequences in human small-cell-lung-carcinoma cells by arbitrarily primed PCR genomic fingerprinting. Hum. Genet., 98, 253-258 (1996).
16. OLINER, J.D., PIETENPOL, J.A., THIACALINGAM, S., GYURIS, J., KINZLER, K.W. and VOGELSTEIN, B., Oncoprotein mdm2 conceals the activation domain of tumor-suppressor p53. Nature (Lond.), 362, 857-860 (1993).
17. PEINADO, M.A., MALKHOSYAN, S., VELAZQUEZ, A. and PERUCHO, M., Isolation and characterization of allelic losses and gains in colorectal tumors by arbitrarily primed polymerase chain reaction. Proc. nat. Acad. Sci. (Wash.), 89, 10065-10069 (1992).
18. PERUCHO, M., WELSH, J., PEINADO, M.A., IONOV, Y. and MCCLELLAND, M., Fingerprinting of DNA and RNA by arbitrarily primed PCR: applications in cancer research. Methods Enzymol., 254, 275-290 (1995).
19. REIFENBERGER, G., ICHIMURA, K., REIFENBERGER, J., ELKAHLOUN, A.G., MELTZER, P.S. and COLLINS, V.P., Refined mapping of 12q13-q15 amplicons in human malignant gliomas suggests CDK4/SAS and mdm2 as independent amplification targets. Cancer Res., 56, 5141-5145 (1996).
20. REIFENBERGER, G., LIU, L., ICHIMURA, K., SCHMIDT, E.E. and COLLINS, V.P., Amplification and over-expression of the mdm2 gene in a sub-set of human malignant gliomas without p53/mutation. Cancer Res., 53, 2736-2739 (1993).
21. SONODA, Y., YOSHIMOTO, T. and SEKIYA, T., Homozygous deletion of the mts1/p16 and mts2/p15 genes and amplification of the cdk4 gene inglioma. Oncogene, 11, 2145-2149 (1995).
22. STEWART, E.A. and 27 OTHERS, An STS-based radiation hybrid map of the human genome. Genome Res., 7, 422-433 (1997).
23. TLSTY, T.D., Genomic instability and its role in neoplasia. Curr. Top. Microbiol. Immunol., 221, 37-46 (1997).
24. TOWBIN, H., STAEHELIN, T. and GORDON, J., Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications. Proc. nat. Acad. Sci. (Wash.), 76, 4350-4354 (1979).
25. WULLICH, B., MULLER, H.W., FISCHER, U., ZANG, K.D. and MEESE, E., Amplified met gene linked to double minutes in human glioblastoma. Europ. J. Cancer, 29A, 1991-1995 (1993).
26. XIONG, Y., MENNINGER, J., BEACH, D. and WARD, D.C., Molecular cloning and chromosomal mapping of ccnd genes encoding human D-type cyclins. Genomics, 13, 575-584 (1992).
27. YASUDA, J., KASHIWABARA, H., KAWAKAMI, K., UEMATU, K., SUGANO, K., PERUCHO, M. and SEKIYA, T., Detection of microsatellite instability in cancers by arbitrarily primed PCR fingerprinting using a fluorescently labeled primer (FAP-PCR). Biol. Chem., 377, 563-570 (1996a).
28. YASUDA, J., NAVARRO, M., MALKHOSYAN, S., VELAZQUEZ, A., ARRIBAS, R., SEKIYA, T. and PERUCHO, M., Chromosomal assignment of human DNA fingerprint sequences by simultaneous hybridization to arbitrarily primed PCR products from human/rodent monochromosome cell hybrids. Genomics, 34, 1-8 (1996b).
29. ZHANG, Y.J., JIANG, W., CHEN, C.J., LEE, C.S., KAHN, S.M., SANTELLA, R.M. and WEINSTEIN, I.B., Amplification and over-expression of cyclin D1 in human hepatocellular carcinoma. Biochem. biophys. Res. Commun., 196, 1010-1016 (1993).
30. ZHU, L., ENDERS, G.H., WU, C.L., STARZ, M.A., MOBERG, K.H., LEES, J.A., DYSON, N. and HARLOW, E., Growth suppression by members of the retinoblastoma protein family. Cold Spring Harb. Symp. quant. Biol., 59, 75-84 (1994).