Selection and application of peptide-binding peptides

Nature Biotechnology

Volumn 18, Issue 1, 2000, Pages 71-74

  Zhang, Zhiwen ^a   Zhu, Weiguang ^a   Kodadek, Thomas ^a  

^a UNIVERSITY OF TEXAS SOUTHWESTERN MEDICAL CENTER   (United States)

Author keywords

Epitope binding; Lambda repressor; Peptides; Two hybrid assay

Indexed keywords

BINDING PROTEIN; EPITOPE; HYBRID PROTEIN; PEPTIDE; PEPTIDE HORMONE; REAGENT;

AFFINITY CHROMATOGRAPHY; ARTICLE; CONTROLLED STUDY; DISSOCIATION CONSTANT; ESCHERICHIA COLI; GENE LIBRARY; IMMUNOBLOTTING; NONHUMAN; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION;

AMINO ACID SEQUENCE; ANIMALS; BINDING SITES; BLOTTING, WESTERN; CHICKENS; CHROMATOGRAPHY, AFFINITY; CLONING, MOLECULAR; DIMERIZATION; DNA-BINDING PROTEINS; EPITOPES; ESCHERICHIA COLI; GENES, REPORTER; HUMANS; INSULIN-LIKE GROWTH FACTOR I; INTERLEUKIN-1; LAC OPERON; LIGANDS; MOLECULAR SEQUENCE DATA; OPERATOR REGIONS (GENETICS); PEPTIDE LIBRARY; PEPTIDES; PROTEIN BINDING; RECOMBINANT FUSION PROTEINS; REPRESSOR PROTEINS; TWO-HYBRID SYSTEM TECHNIQUES; VIRAL PROTEINS;

ESCHERICHIA COLI;

EID: 0033986709     PISSN: 10870156     EISSN: None     Source Type: Journal    
DOI: 10.1038/71951     Document Type: Article

References (25)

1. Schneider, S. et al. Mutagenesis and selection of PDZ domains that bind new protein targets. Nat. Biotechnol. 17, 170-175 (1999).
2. Dong, D.L., Liu, R., Sherlock, R., Wigler, M.H. & Nestler, H.P. Molecular forceps from combinatorial libraries prevent the farnesylation of Ras by binding to its carboxyl terminus. Chem. Biol. 6, 133-141 (1999).
3. Hossain, M.A. & Schneider, H.-J. Sequence-selective evaluation of peptide sidechain interaction. New artificial receptors for selective recognition in water. J. Am. Chem. Soc. 120, 11208-11209 (1998).
4. Still, W.C. Discovery of sequence-selective peptide binding by synthetic receptors using encoded combinatorial libraries. Accounts of Chemical Research. 29, 155-163 (1996).
5. Burger, M.T. & Still, W.C. Simple structural requirements for sequence-selective peptide receptors? Tripeptide binding by a podand ionophore. J. Org. Chem. 62, 4785-4790 (1997).
6. Chen, C.-T., Wagner, H. & Still, W.C. Fluorescent, sequence-selective peptide detection by synthetic small molecules. Science 279, 851-853 (1998).
7. Cheng, Y., Suenaga, T. & Still, W.C. Sequence-selective peptide binding with peptido-A,B-trans-steroidal receptor selected from an encoded combinatorial receptor library. J. Am. Chem. Soc. 118, 1813-1814 (1996).
8. Hioki, H. & Still, W.C. Chemical evolution: a model system that selects and amplifies a receptor for the tripeptide (D)Pro(L)Val(D)Val. J. Org. Chem. 63, 904-905 (1998).
9. Ohlmeyer, M.H. et al. Complex synthetic chemical libraries indexed with molecular tags. Proc. Natl. Acad. Sci. USA 90, 10922-10926 (1993).
10. Shao, Y. & Still, W.C. Sequence-selective receptors of peptides. A simple molecular design for construction of large combinatorial libraries of receptors. J. Org. Chem. 61, 6086-6087 (1996).
11. Hu, J., O'Shea, E.K., Kim, P.S. & Sauer, R.T. Sequence requirements for coiledcolis: analysis with lambda Repressor-GCN4 leucine zipper fusions. Science 250, 1400-1403 (1990).
12. Hu, J.C. Repressor fusions as a tool to study protein-protein interactions. Structure 3, 431-433 (1995).
13. Cairns, M.T., Green, A.J., White, P.M., Johnston, P.G., & Brenner, S. A novel bacterial vector system for monitoring protein-protein interactions in the cAMP-dependent protein kinase complex. Gene 185, 5-9 (1997).
14. Jappelli, R. & Brenner, S. Interaction between cAMP-dependent protein kinase catalytic subunit and peptide inhibitors analyzed with λ represser fusions. J. Mol. Biol. 259, 575-578 (1996).
15. Bunker, C.A. & Kingston, R.E. Identification of a cDNA for SSRP1, an HMG-box protein, by interaction with the c-Myc oncoprotein in a novel bacterial expression screen. Nucleic Acids Res. 23, 269-276 (1995).
16. Ptashne, M.A Genetic switch. Gene control and phage lambda, 18-20 (Cell Press, Cambridge, MA; 1987).
17. Howard, A.D. et al. IL-1-converting enzyme requires aspartic acid residues for processing of the IL-1β precursor at two distinct sites and does not cleave 31-kDa IL-1α. J. Immunol. 147, 2964-2969 (1991).
18. Zhang, Z., Murphy, A., Hu, J.C. & Kodadek, T. Genetic selection of short peptides that support protein oligomerization in vivo. Curr. Biol. 9, 417-420 (1999).
19. Ellenberger, T.E., Brandi, C.J., Struhl, K. & Harrison, S.C. The GCN4 basic region leucine zipper binds DNA as a dimer of uninterrupted alpha helices: crystal structure of the protein-DNA complex. Cell 71, 1223-1237 (1992).
20. Fields, S. & Song, O.-K. A novel genetic system to detect protein-protein interactions. Nature 340, 245-246 (1989).
21. Phizicky, E.M. & Fields, S. Protein-protein interactions: methods for detection and analysis. Microbiol. Rev. 59, 94-123 (1995).
22. Drees, B.L. Progress and variations in two-hybrid and three-hybrid technologies. Curr. Opin. in Chem. Biol. 3, 64-70 (1999).
23. Miller, J. Experiments in molecular genetics, (Cold Spring Harbor Press, Plainview, NY; 1972).
24. Parks, T.D., Leuther, K.K., Howard, E.D., Johnston, S.A. & Dougherty, W.G. Release of proteins and peptides from fusion proteins using a recombinant plant virus proteinase. Anal. Biochem. 216, 413-417 (1994).
25. Freifelder, D. Physical biochemistry. Applications to biochemistry and molecular biology 654-658 (W.H. Freeman, New York; 1982).