-
1
-
-
0032101346
-
Essential spaces defined by NMR structures ensembles and molecular dynamics simulation show significant overlap
-
Abseher R, Horstink L, Hilbers CW, Nilges M. 1998. Essential spaces defined by NMR structures ensembles and molecular dynamics simulation show significant overlap. Proteins 31:370-382.
-
(1998)
Proteins
, vol.31
, pp. 370-382
-
-
Abseher, R.1
Horstink, L.2
Hilbers, C.W.3
Nilges, M.4
-
3
-
-
0028577744
-
Complete chemical structure of photoactive yellow protein: Novel thioester-linked 4-hydroxycinnamyl chromophore and photocycle chemistry
-
Baca M, Borgstahl GEO, Boissinot M, Burke PM, Williams DR, Slater KA, Getzoff ED. 1994. Complete chemical structure of photoactive yellow protein: Novel thioester-linked 4-hydroxycinnamyl chromophore and photocycle chemistry. Biochemistry 33:14369-14377.
-
(1994)
Biochemistry
, vol.33
, pp. 14369-14377
-
-
Baca, M.1
Borgstahl, G.E.O.2
Boissinot, M.3
Burke, P.M.4
Williams, D.R.5
Slater, K.A.6
Getzoff, E.D.7
-
4
-
-
0000913086
-
A fast algorithm for rendering space-filling molecule pictures
-
Bacon DJ, Anderson WF. 1988. A fast algorithm for rendering space-filling molecule pictures. J Mol Graph 6:219-220.
-
(1988)
J Mol Graph
, vol.6
, pp. 219-220
-
-
Bacon, D.J.1
Anderson, W.F.2
-
5
-
-
0031584262
-
The primary events in the photoactivation of yellow protein
-
Baltuska A, van Stokkum IHM, Kroon A, Monshouwer R, Hellingwerf KJ, van Grondelle R. 1997. The primary events in the photoactivation of yellow protein. Chem Phys Lett 270:263-266.
-
(1997)
Chem Phys Lett
, vol.270
, pp. 263-266
-
-
Baltuska, A.1
Van Stokkum, I.H.M.2
Kroon, A.3
Monshouwer, R.4
Hellingwerf, K.J.5
Van Grondelle, R.6
-
6
-
-
0029110488
-
1.4 Å structure of photoactive yellow protein, a cytosolic photoreceptor: Unusual fold, active site, and chroniophore
-
Borgstahl GO, Williams DR, Getzoff ED. 1995. 1.4 Å structure of photoactive yellow protein, a cytosolic photoreceptor: Unusual fold, active site, and chroniophore. Biochemistry 34:6278-6287.
-
(1995)
Biochemistry
, vol.34
, pp. 6278-6287
-
-
Borgstahl, G.O.1
Williams, D.R.2
Getzoff, E.D.3
-
7
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brünger AT, Adams PD, Clore GM, DeLano WL, Gros P, Gross-Kunstleve RW, Jiang JS, Kuszewski J, Nilges M, Pannu NS, et al. 1998. Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr D54:905-921.
-
(1998)
Acta Crystallogr
, vol.D54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
Delano, W.L.4
Gros, P.5
Gross-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
-
8
-
-
0032535874
-
Subpicosecond fluorescence upconversion measurements of primary events in the yellow proteins
-
Changenet P, Zhang H, van der Meer M, Hellingwerf KJ, Glasbeek M. 1998. Subpicosecond fluorescence upconversion measurements of primary events in the yellow proteins. Phys Chem Lett 282:276-282.
-
(1998)
Phys Chem Lett
, vol.282
, pp. 276-282
-
-
Changenet, P.1
Zhang, H.2
Van Der Meer, M.3
Hellingwerf, K.J.4
Glasbeek, M.5
-
9
-
-
0031584256
-
Femtosecond-picosecond fluorescence studies on excited state dynamics of photoactive yellow protein from Ectothiorhodospira halophila
-
Chosrowjan H, Mataga N, Nakashima N, Imamoto Y, Tokunaga F. 1997. Femtosecond-picosecond fluorescence studies on excited state dynamics of photoactive yellow protein from Ectothiorhodospira halophila. Chem Phys Lett 270:267-272.
-
(1997)
Chem Phys Lett
, vol.270
, pp. 267-272
-
-
Chosrowjan, H.1
Mataga, N.2
Nakashima, N.3
Imamoto, Y.4
Tokunaga, F.5
-
10
-
-
0022706389
-
The relation between the divergence of sequence and structure in proteins
-
Chothia C, Lesk AM. 1986. The relation between the divergence of sequence and structure in proteins. EMBO J 5:823-826.
-
(1986)
EMBO J
, vol.5
, pp. 823-826
-
-
Chothia, C.1
Lesk, A.M.2
-
11
-
-
0032080528
-
Domain motions in bacteriophage T4 lysozyme: A comparison between molecular dynamics and crystallographic data
-
de Groot BL, Hayward S, van Aalten DMF, Amadei A, Berendsen HJC. 1998. Domain motions in bacteriophage T4 lysozyme: A comparison between molecular dynamics and crystallographic data. Proteins 31:116-127.
-
(1998)
Proteins
, vol.31
, pp. 116-127
-
-
De Groot, B.L.1
Hayward, S.2
Van Aalten, D.M.F.3
Amadei, A.4
Berendsen, H.J.C.5
-
12
-
-
0030931612
-
Prediction of protein conformational freedom from distance constraints
-
de Groot BL, van Aalten DMF, Scheck RM, Amadei A, Vriend G, Berendsen HJC. 1997. Prediction of protein conformational freedom from distance constraints. Proteins 29:240-251.
-
(1997)
Proteins
, vol.29
, pp. 240-251
-
-
De Groot, B.L.1
Van Aalten, D.M.F.2
Scheck, R.M.3
Amadei, A.4
Vriend, G.5
Berendsen, H.J.C.6
-
13
-
-
0033525835
-
Conformational changes in the chaperonin GroEL: New insights into the allosteric mechanism
-
de Groot BL, Vriend G, Berendsen HJC. 1999. Conformational changes in the chaperonin GroEL: New insights into the allosteric mechanism. J Mol Biol 286:1241-1249.
-
(1999)
J Mol Biol
, vol.286
, pp. 1241-1249
-
-
De Groot, B.L.1
Vriend, G.2
Berendsen, H.J.C.3
-
15
-
-
0037596438
-
Solution structure and backbone dynamics of the photoactive yellow protein
-
Dux P, Rubinstenn G, Vuister GW, Boelens R, Mulder FAA, Hard K, Hoff WD, Kroon A, Crielaard W, Hellingwerf KJ, Kaptein R. 1998. Solution structure and backbone dynamics of the photoactive yellow protein. Biochemistry 37:12689-12699.
-
(1998)
Biochemistry
, vol.37
, pp. 12689-12699
-
-
Dux, P.1
Rubinstenn, G.2
Vuister, G.W.3
Boelens, R.4
Mulder, F.A.A.5
Hard, K.6
Hoff, W.D.7
Kroon, A.8
Crielaard, W.9
Hellingwerf, K.J.10
Kaptein, R.11
-
16
-
-
0030729838
-
An extensively modified version of MolScript that includes greatly enhanced coloring capabilities
-
Esnouf RM. 1997. An extensively modified version of MolScript that includes greatly enhanced coloring capabilities. J Mol Graph 15:132-134.
-
(1997)
J Mol Graph
, vol.15
, pp. 132-134
-
-
Esnouf, R.M.1
-
17
-
-
0031039399
-
Millisecond time-resolved Laue crystallography: Structure of a protein photocycle intermediate
-
Genick UK, Borgstahl GEO, Kingman N, Ren Z, Pradervand C, Burke PM, Srajer V, Teng T, Schildkamp W, McRee DE, et al. 1997. Millisecond time-resolved Laue crystallography: Structure of a protein photocycle intermediate. Science 275:1471-1475
-
(1997)
Science
, vol.275
, pp. 1471-1475
-
-
Genick, U.K.1
Borgstahl, G.E.O.2
Kingman, N.3
Ren, Z.4
Pradervand, C.5
Burke, P.M.6
Srajer, V.7
Teng, T.8
Schildkamp, W.9
McRee, D.E.10
-
18
-
-
0032510475
-
Structure at 0.85 a resolution of an early protein photocycle intermediate
-
Genick UK, Soltis SM, Kuhn P, Canestrelli IL, Getzoff ED. 1998. Structure at 0.85 A resolution of an early protein photocycle intermediate. Nature 392:206-209.
-
(1998)
Nature
, vol.392
, pp. 206-209
-
-
Genick, U.K.1
Soltis, S.M.2
Kuhn, P.3
Canestrelli, I.L.4
Getzoff, E.D.5
-
19
-
-
0027940414
-
Thiol ester-linked p-coumaric acid as a new photoactive prosthetic group in a protein with rhodopsin-like photochemistry
-
Hoff WD, Düx P, Devreese B, Nugteren-Roodzant IM, Crielaard W, Boelens R, Kaptein R, van Beeumen J, Hellingwerf KJ. 1994a. Thiol ester-linked p-coumaric acid as a new photoactive prosthetic group in a protein with rhodopsin-like photochemistry. Biochemistry 33:13959-13962.
-
(1994)
Biochemistry
, vol.33
, pp. 13959-13962
-
-
Hoff, W.D.1
Düx, P.2
Devreese, B.3
Nugteren-Roodzant, I.M.4
Crielaard, W.5
Boelens, R.6
Kaptein, R.7
Van Beeumen, J.8
Hellingwerf, K.J.9
-
20
-
-
84989696264
-
Low temperature absorbance and fluorescence spectroscopy of the photoactive yellow protein from Ectothiorhodospira halophila
-
Hoff WD, Kwa SLS, van Grondelle R, Hellingwerf KJ. 1992. Low temperature absorbance and fluorescence spectroscopy of the photoactive yellow protein from Ectothiorhodospira halophila. Photochem Photobiol 56:529-539.
-
(1992)
Photochem Photobiol
, vol.56
, pp. 529-539
-
-
Hoff, W.D.1
Kwa, S.L.S.2
Van Grondelle, R.3
Hellingwerf, K.J.4
-
21
-
-
0028100905
-
Measurement and global analysis of the absorbante changes in the photocycle of the photoactive yellow protein from ectothiorhodospira halophila
-
Hoff WD, van Stokkum IHM, van Ramesdonk HJ, van Brederode ME, Brouwer, AM, Fitch JC, Meyer TE, van Grondelle R, Hellingwerf KJ. 1994b. Measurement and global analysis of the absorbante changes in the photocycle of the photoactive yellow protein from Ectothiorhodospira halophila. Biophys J 767:1691-1705.
-
(1994)
Biophys J
, vol.767
, pp. 1691-1705
-
-
Hoff, W.D.1
Van Stokkum, I.H.M.2
Van Ramesdonk, H.J.3
Van Brederode, M.E.4
Brouwer, A.M.5
Fitch, J.C.6
Meyer, T.E.7
Van Grondelle, R.8
Hellingwerf, K.J.9
-
22
-
-
0033579823
-
Global conformational changes upon receptor stimulation in photoactive yellow protein
-
Hoff WD, Xie A, van Stokkum IHM, Tang X-J, Gural J, Kroon AR, Hellingwerf KJ. 1999. Global conformational changes upon receptor stimulation in photoactive yellow protein. Biochemistry 38: 1009-1017.
-
(1999)
Biochemistry
, vol.38
, pp. 1009-1017
-
-
Hoff, W.D.1
Xie, A.2
Van Stokkum, I.H.M.3
Tang, X.-J.4
Gural, J.5
Kroon, A.R.6
Hellingwerf, K.J.7
-
23
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones TA, Zou JY, Cowan SW. Kjeldgaard M. 1991. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr A47:110-119.
-
(1991)
Acta Crystallogr
, vol.A47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
24
-
-
0029964634
-
Evidence for trans-cis isomerization of the p-coumaric acid chromophore as the photochemical basis of the photocycle of photoactive yellow protein
-
Kort R, Vonk H, Xu X, Hoff WD, Crielaard W, Hellingwerf KJ. 1996. Evidence for trans-cis isomerization of the p-coumaric acid chromophore as the photochemical basis of the photocycle of photoactive yellow protein FEBS Lett 32:73-78.
-
(1996)
FEBS Lett
, vol.32
, pp. 73-78
-
-
Kort, R.1
Vonk, H.2
Xu, X.3
Hoff, W.D.4
Crielaard, W.5
Hellingwerf, K.J.6
-
25
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
Kraulis PJ. 1991. MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures. J Appl Crystallogr 24:946-950.
-
(1991)
J Appl Crystallogr
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
26
-
-
0029731183
-
Spectral tuning, fluorescence, and photoactivity in hybrids of photoactive yellow protein, reconstituted with native or modified chromophores
-
Kroon AR, Hoff WD, Fennema HPM, Gijzen J, Koomen G-J, Verhoeven JW, Crielaard W, Hellingwerf KJ. 1996. Spectral tuning, fluorescence, and photoactivity in hybrids of photoactive yellow protein, reconstituted with native or modified chromophores. J Biol Chem 271:31949-31956.
-
(1996)
J Biol Chem
, vol.271
, pp. 31949-31956
-
-
Kroon, A.R.1
Hoff, W.D.2
Fennema, H.P.M.3
Gijzen, J.4
Koomen, G.-J.5
Verhoeven, J.W.6
Crielaard, W.7
Hellingwerf, K.J.8
-
27
-
-
0001099937
-
Traitement statistique des erreurs dan la determination des structures cristallines
-
Luzatti V. 1952. Traitement statistique des erreurs dan la determination des structures cristallines. Acta Crystallogr 5:802.
-
(1952)
Acta Crystallogr
, vol.5
, pp. 802
-
-
Luzatti, V.1
-
28
-
-
0023028920
-
Crystallographic characterization of a photoactive yellow protein with photochemistry similar to sensory rhodopsin
-
McRee DE, Meyer TE, Cusanovich MA, Parge HE, Getzoff ED. 1986. Crystallographic characterization of a photoactive yellow protein with photochemistry similar to sensory rhodopsin. J Biol Chem 261:13850-13851.
-
(1986)
J Biol Chem
, vol.261
, pp. 13850-13851
-
-
McRee, D.E.1
Meyer, T.E.2
Cusanovich, M.A.3
Parge, H.E.4
Getzoff, E.D.5
-
29
-
-
0024727887
-
Crystallographic structure of a photoreceptor protein at 2.4 Å resolution
-
McRee DE, Tainer JA, Meyer TE, van Beeumen J, Cusanovich MA, Getzoff ED. 1989. Crystallographic structure of a photoreceptor protein at 2.4 Å resolution. Proc Natl Acad Sci USA 86:6533-6537.
-
(1989)
Proc Natl Acad Sci USA
, vol.86
, pp. 6533-6537
-
-
McRee, D.E.1
Tainer, J.A.2
Meyer, T.E.3
Van Beeumen, J.4
Cusanovich, M.A.5
Getzoff, E.D.6
-
30
-
-
0032478195
-
Dynamic properties of the guanine nucleotide binding protein a subunit and comparison of its guanosine triphosphate hydrolase domain with that of ras p21
-
Mello LV, van Aalten DMF, Findlay JBC. 1998. Dynamic properties of the guanine nucleotide binding protein a subunit and comparison of its guanosine triphosphate hydrolase domain with that of ras p21. Biochemistry 37: 3137-3142.
-
(1998)
Biochemistry
, vol.37
, pp. 3137-3142
-
-
Mello, L.V.1
Van Aalten, D.M.F.2
Findlay, J.B.C.3
-
31
-
-
0028057108
-
Raster3D version 2.0 - A program for photorealistic molecular graphics
-
Merritt EA, Murphy MEP. 1994. Raster3D version 2.0 - A program for photorealistic molecular graphics. Acta Crystallogr D50:869-873.
-
(1994)
Acta Crystallogr
, vol.D50
, pp. 869-873
-
-
Merritt, E.A.1
Murphy, M.E.P.2
-
32
-
-
0022430790
-
Isolation and characterization of soluble cytochromes, ferredoxins and other chromophoric proteins from the halophilic phototropic bacterium ectothiorhodospira halophila
-
Meyer TE. 1985. Isolation and characterization of soluble cytochromes, ferredoxins and other chromophoric proteins from the halophilic phototropic bacterium Ectothiorhodospira halophila. Biochim Biophys Acta 806:175-183.
-
(1985)
Biochim Biophys Acta
, vol.806
, pp. 175-183
-
-
Meyer, T.E.1
-
33
-
-
0025910866
-
Picosecond decay kinetics and quantum yield of fluorescence of the photoactive yellow protein from the halophilic purple phototrophic bacterium. Ectothiorhodospira halophila
-
Meyer TE, Tollin G, Causgrove TP, Cheng P, Blankenship RE. 1991. Picosecond decay kinetics and quantum yield of fluorescence of the photoactive yellow protein from the halophilic purple phototrophic bacterium. Ectothiorhodospira halophila. Biophys J 59:988-991.
-
(1991)
Biophys J
, vol.59
, pp. 988-991
-
-
Meyer, T.E.1
Tollin, G.2
Causgrove, T.P.3
Cheng, P.4
Blankenship, R.E.5
-
34
-
-
0023152468
-
Properties of a water-soluble, yellow protein isolated from a halophilic phototrophic bacterium that has photochemical activity analogous to sensory rhodopsin
-
Meyer TE, Yakali E, Cusanovich MA, Tollin G. 1987. Properties of a water-soluble, yellow protein isolated from a halophilic phototrophic bacterium that has photochemical activity analogous to sensory rhodopsin. Biochemistry 26:418-423.
-
(1987)
Biochemistry
, vol.26
, pp. 418-423
-
-
Meyer, T.E.1
Yakali, E.2
Cusanovich, M.A.3
Tollin, G.4
-
35
-
-
0027462930
-
A light-dependent branching reaction in the photocycle of the yellow protein from Ectothiorhodospira halophila
-
Miller A, Leigeber H, Hoff WD, Hellingwerf KJ. 1998. A light-dependent branching reaction in the photocycle of the yellow protein from Ectothiorhodospira halophila. Biochim Biophys Acta 1141:190-196.
-
(1998)
Biochim Biophys Acta
, vol.1141
, pp. 190-196
-
-
Miller, A.1
Leigeber, H.2
Hoff, W.D.3
Hellingwerf, K.J.4
-
36
-
-
0031053055
-
AMoRe: An automated molecular replacement program package
-
Navaza J, Saludjian P. 1997. AMoRe: An automated molecular replacement program package. Methods Enzymol 276:581-594.
-
(1997)
Methods Enzymol
, vol.276
, pp. 581-594
-
-
Navaza, J.1
Saludjian, P.2
-
37
-
-
0026319199
-
Protein folding and association - Insights from the interfacial and thermodynamic properties of hydrocarbons
-
Nicholls A, Sharp K, Honig B. 1991. Protein folding and association - Insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins 11:281-296.
-
(1991)
Proteins
, vol.11
, pp. 281-296
-
-
Nicholls, A.1
Sharp, K.2
Honig, B.3
-
38
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z, Minor W. 1997. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 276:307-326.
-
(1997)
Methods Enzymol
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
39
-
-
0032568630
-
Photoactive yellow protein: A structural prototype for the three-dimensional fold of the PAS domain superfamily
-
Pellequer JL, Wagner-Smith KA, Kay SA, Getzoff ED. 1998. Photoactive yellow protein: A structural prototype for the three-dimensional fold of the PAS domain superfamily. Proc Natl Acad Sci USA 95:5884-5890.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 5884-5890
-
-
Pellequer, J.L.1
Wagner-Smith, K.A.2
Kay, S.A.3
Getzoff, E.D.4
-
40
-
-
7144253808
-
Energy transduction on the nanosecond time scale: Early structural events in a Xanthopsin photocycle
-
Perman B, Srajer V, Ren Z, Teng T, Pradervand C, Ursby T, Bourgeois D, Schotte F, Wulff M, Kort R, et al. 1998. Energy transduction on the nanosecond time scale: Early structural events in a Xanthopsin photocycle. Science 279:1946-1950.
-
(1998)
Science
, vol.279
, pp. 1946-1950
-
-
Perman, B.1
Srajer, V.2
Ren, Z.3
Teng, T.4
Pradervand, C.5
Ursby, T.6
Bourgeois, D.7
Schotte, F.8
Wulff, M.9
Kort, R.10
-
41
-
-
0029926518
-
Dynamics of proteins in different solvent systems: Analysis of essential motion in lipases
-
Peters GH, van Aalten DMF, Edholm O, Toxvaerd S, Bywater R. 1996. Dynamics of proteins in different solvent systems: Analysis of essential motion in lipases. Biophys J 71:2245-2255.
-
(1996)
Biophys J
, vol.71
, pp. 2245-2255
-
-
Peters, G.H.1
Van Aalten, D.M.F.2
Edholm, O.3
Toxvaerd, S.4
Bywater, R.5
-
42
-
-
0031821274
-
Structural and dynamic changes of photoactive yellow protein during its photocycle in solution
-
Rubinstenn G, Vuister GW, Mulder FAA, Dux PE, Boelens R, Hellingwerf KJ, Kaptein R. 1998. Structural and dynamic changes of photoactive yellow protein during its photocycle in solution. Nat Struct Biol 5:568-570.
-
(1998)
Nat Struct Biol
, vol.5
, pp. 568-570
-
-
Rubinstenn, G.1
Vuister, G.W.2
Mulder, F.A.A.3
Dux, P.E.4
Boelens, R.5
Hellingwerf, K.J.6
Kaptein, R.7
-
44
-
-
0027324441
-
The eubacterium Ectothiorhodospira halophila is negatively phototactic, with a wavelength dependence that fits the absorption spectrum of the photoactive yellow protein
-
Sprenger WW, Hoff WD, Armitage JP, Hellingwerf KJ. 1993. The Eubacterium Ectothiorhodospira halophila is negatively phototactic, with a wavelength dependence that fits the absorption spectrum of the photoactive yellow protein. J Bacteriol 175:3096-3104.
-
(1993)
J Bacteriol
, vol.175
, pp. 3096-3104
-
-
Sprenger, W.W.1
Hoff, W.D.2
Armitage, J.P.3
Hellingwerf, K.J.4
-
45
-
-
0031808072
-
New photocycle intermediates in the photoactive yellow protein from Ectothiorhodospira halophila: Picosecond transient absorption spectroscopy
-
Ujj L, Devanathan S, Meyer TE, Cusanovich MA, Tollin G, Atkinson GH. 1998. New photocycle intermediates in the photoactive yellow protein from Ectothiorhodospira halophila: Picosecond transient absorption spectroscopy. Biophys J 75:406-412.
-
(1998)
Biophys J
, vol.75
, pp. 406-412
-
-
Ujj, L.1
Devanathan, S.2
Meyer, T.E.3
Cusanovich, M.A.4
Tollin, G.5
Atkinson, G.H.6
-
46
-
-
0030043196
-
A comparison of structural and dynamic properties of different simulation methods applied to SH3
-
van Aalten DMF, Amadei A, Bywater R, Findlay JBC, Berendsen HJC, Sander C, Stouten PFW. 1996. A comparison of structural and dynamic properties of different simulation methods applied to SH3. Biophys J 70:684-692.
-
(1996)
Biophys J
, vol.70
, pp. 684-692
-
-
Van Aalten, D.M.F.1
Amadei, A.2
Bywater, R.3
Findlay, J.B.C.4
Berendsen, H.J.C.5
Sander, C.6
Stouten, P.F.W.7
-
47
-
-
0029075795
-
The essential dynamics of thermolysin - Confirmation of hinge-bending motion and comparison of simulations in vacuum and water
-
van Aalten DMF, Amadei A, Linssen ABM, Eijsink VGH, Vriend G, Berendsen HJ C. 1995a. The essential dynamics of thermolysin - Confirmation of hinge-bending motion and comparison of simulations in vacuum and water. Proteins 22:45-54.
-
(1995)
Proteins
, vol.22
, pp. 45-54
-
-
Van Aalten, D.M.F.1
Amadei, A.2
Linssen, A.B.M.3
Eijsink, V.G.H.4
Vriend, G.5
Berendsen, H.J.C.6
-
48
-
-
0030833135
-
Protein dynamics derived from clusters of crystal structures
-
van Aalten DMF, Conn DA, de Groot BL, Berendsen HJC, Findlay JBC, Amadei A. 1997a. Protein dynamics derived from clusters of crystal structures. Biophys J 73:2891-2896.
-
(1997)
Biophys J
, vol.73
, pp. 2891-2896
-
-
Van Aalten, D.M.F.1
Conn, D.A.2
De Groot, B.L.3
Berendsen, H.J.C.4
Findlay, J.B.C.5
Amadei, A.6
-
49
-
-
0029586726
-
Essential dynamics of the cellular retinol binding protein - Evidence for ligand induced conformational changes
-
van Aalten DMF, Findlay JBC, Amadei A, Berendsen HJC. 1995b. Essential dynamics of the cellular retinol binding protein - Evidence for ligand induced conformational changes. Protein Eng 8:1129-1135.
-
(1995)
Protein Eng
, vol.8
, pp. 1129-1135
-
-
Van Aalten, D.M.F.1
Findlay, J.B.C.2
Amadei, A.3
Berendsen, H.J.C.4
-
50
-
-
0031693341
-
Essential dynamics from NMR clusters: Dynamics properties of the Myb DNA-binding domain and a hinge-bending enhancing variant
-
van Aalten DMF, Grotewold E, Joshua-Tor L. 1998a. Essential dynamics from NMR clusters: Dynamics properties of the Myb DNA-binding domain and a hinge-bending enhancing variant. Methods 14:318-328.
-
(1998)
Methods
, vol.14
, pp. 318-328
-
-
Van Aalten, D.M.F.1
Grotewold, E.2
Joshua-Tor, L.3
-
51
-
-
0031788430
-
Concerted motions in the photoactive yellow protein
-
van Aalten DMF, Hoff WD, Findlay JBC, Crielaard W, Hellingwerf KJ. 1998b. Concerted motions in the photoactive yellow protein. Protein Eng 11:873-879.
-
(1998)
Protein Eng
, vol.11
, pp. 873-879
-
-
Van Aalten, D.M.F.1
Hoff, W.D.2
Findlay, J.B.C.3
Crielaard, W.4
Hellingwerf, K.J.5
-
52
-
-
0031019423
-
Engineering protein mechanics: Inhibition of concerted motions of the cellular retinol binding protein by site directed mutagenesis
-
van Aalten DMF, Jones PC, de Sousa M, Findlay JBC. 1997b. Engineering protein mechanics: Inhibition of concerted motions of the cellular retinol binding protein by site directed mutagenesis. Protein Eng 10:31-37.
-
(1997)
Protein Eng
, vol.10
, pp. 31-37
-
-
Van Aalten, D.M.F.1
Jones, P.C.2
De Sousa, M.3
Findlay, J.B.C.4
-
53
-
-
0029950952
-
Protein folding thermodynamics applied to the photocycle of the photoactive yellow protein
-
van Brederode ME, Hoff WD, van Stokkum IHM, de Groot ML, Hellingwerf KJ. 1996. Protein folding thermodynamics applied to the photocycle of the photoactive yellow protein. Biophys J 71:365-380.
-
(1996)
Biophys J
, vol.71
, pp. 365-380
-
-
Van Brederode, M.E.1
Hoff, W.D.2
Van Stokkum, I.H.M.3
De Groot, M.L.4
Hellingwerf, K.J.5
-
54
-
-
0025398721
-
WHAT IF: A molecular modeling and drug design program
-
Vriend G. 1990. WHAT IF: A molecular modeling and drug design program. J Mol Graph 8:52-56.
-
(1990)
J Mol Graph
, vol.8
, pp. 52-56
-
-
Vriend, G.1
-
55
-
-
0030446427
-
Glu46 donates a proton to the 4-hydroxycinnamate anion chromophore during the photocycle of photoactive yellow protein
-
Xie AH, Hoff WD, Kroon AR, Hellingwerf KJ. 1996. Glu46 donates a proton to the 4-hydroxycinnamate anion chromophore during the photocycle of photoactive yellow protein. Biochemistry 35:14671-14678.
-
(1996)
Biochemistry
, vol.35
, pp. 14671-14678
-
-
Xie, A.H.1
Hoff, W.D.2
Kroon, A.R.3
Hellingwerf, K.J.4
-
56
-
-
0029150760
-
Protein flexibility and adaptability seen in 25 crystal forms of T4 lysozyme
-
Zhang X, Wozniak JA, Matthews BW. 1995. Protein flexibility and adaptability seen in 25 crystal forms of T4 lysozyme. J Mol Biol 250:527-552.
-
(1995)
J Mol Biol
, vol.250
, pp. 527-552
-
-
Zhang, X.1
Wozniak, J.A.2
Matthews, B.W.3
|