Aggregation kinetics of extended porphyrin and cyanine dye assemblies

Biophysical Journal

Volumn 79, Issue 1, 2000, Pages 550-560

  Pasternack, Robert F ^a   Fleming, Cavan ^a   Herring, Stephanie ^a   Collings, Peter J ^a   DePaula, Julio ^b   DeCastro, Gerard ^c   Gibbs, Esther J ^c  

^a SWARTHMORE COLLEGE   (United States)

^b HAVERFORD COLLEGE   (United States)

^c GOUCHER COLLEGE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CYANINE DYE; PORPHYRIN;

ARTICLE; CATALYSIS; KINETICS; PROTEIN AGGREGATION; PROTEIN ANALYSIS; PROTEIN ASSEMBLY;

EID: 0033936839     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(00)76316-8     Document Type: Article

References (28)

1. Akins, D. L., H.-R. Zhu, and C. Guo. 1994. Absorption and Raman scattering by aggregated meso-tetrakis(p-sulfonatophenyl)porphine J. Phys. Chem. 98:3612-3618.
2. Collings, P. J., E. J. Gibbs, T. E. Starr, O. Vafek, C. Yee, L. Pomerance, and R. F. Pasternack. 1999. Resonance light scattering and its application in determining the size, shape, and aggregation number for supramolecular assemblies of chromophores. J. Phys. Chem. B. 103: 8474-8481.
3. dePaula, J. C., J. H. Robblee, and R. F. Pasternack. 1995. Aggregation of chlorophyll a probed by resonance light scattering spectroscopy. Biophys. J. 68:335-341.
4. Fleischer, E. B., J. M. Palmer, T. S. Srivastava, and A. Chatterjee. 1971. Thermodynamic and kinetic properties of an iron-porphyrin system. J. Am. Chem. Soc. 93:3162-3167.
5. Horng, M.-L., and E. L. Quitevis. 1993. Excited-state dynamics of polymer-bound J-aggregates. J. Phys. Chem. 97:12408-12415.
6. Jarrett, J. T., and P. T. Lansbury, Jr. 1992. Amyloid fibril formation requires a chemically discriminating nucleation event: studies of an amyloidogenic sequence from the bacterial protein OsmB. Biochemistry. 31:12345-12352.
7. Jarrett, J. T., and P. T. Lansbury, Jr. 1993. Seeding "one-dimensional crystallization" of amyloid: a pathogenic mechanism in Alzheimer's disease and scrapie? Cell. 73:1055-1058.
8. Jelley, E. E. 1936. Spectral absorption and fluorescence of dyes in the molecular state. Nature. 138:1009-1010.
9. Leyvraz, F. 1986. Rate equation approach to aggregation phenomena. In On Growth and Form. H. E. Stanley and N. Ostrowski, editors. Martinus Nijhoff Publishers, Dordrecht, the Netherlands. 136-144.
10. Maiti, N. C., S. Mazumdar, and N. Periasamy. 1998. J- and H-aggregates of porphyrin-surfactant complexes: time-resolved fluorescence and other spectroscopic studies. J. Phys. Chem. B. 102:1528-1538.
11. Maiti, N. C., M. Ravikanth, S. Mazumdar, and N. Periasamy. 1995. Fluorescence dynamics of noncovalently linked porphyrin dimers and aggregates. J. Phys. Chem. 99:17192-17197.
12. Makio, S., N. Kanamaru, and J. Tanaka. 1980. The J-aggregate 5,5′,6,6′-tetrachloro-1,1′-diethyl-3,3′-bis(4- sulfobutyl)benzimidazolocarbocyanine sodium salt in aqueous solution. Bull. Chem. Soc. Jpn. 53: 3120-3124.
13. Norden, B. 1977. Linear and circular dichroism of polymeric pseudocyanine. J. Phys. Chem. 81:151-159.
14. Ohno, O., Y. Kaizu, and H. Kobayashi. 1993. J-aggregate formation of a water-soluble porphyrin in acidic aqueous media. J. Chem. Phys. 99: 4128-4139.
15. Parkash, J., J. H. Robblee, J. Agnew, E. Gibbs, P. Collings, R. F. Pasternack, and J. C. dePaula. 1998. Depolarized resonance light scattering by porphyrin and chlorophyll a aggregates. Biophys. J. 74:2089-2099.
16. Pasternack, R. F., C. Bustamante, P. J. Collings, A. Giannetto, and E. J. Gibbs. 1993. Porphyrin assemblies on DNA studied by a resonance light scattering technique. J. Am. Chem. Soc. 115:5393-5399.
17. Pasternack, R. F., and P. J. Collings. 1995. Resonance light scattering: a new technique for studying chromophore aggregation. Science. 269: 935-939.
18. Pasternack, R. F., L. Francesconi, D. Raff, and E. Spiro. 1973. Aggregation of nickel(II), copper(II), and zinc(II) derivatives of water-soluble porphyrins. Inorg. Chem. 12:2606-2611.
19. Pasternack, R. F., and E. J. Gibbs. 1993. Porphyrin assembly formation on helical biopolymers. J. Inorg. Organomet. Polym. 3:77-88.
20. Pasternack, R. F., E. J. Gibbs, P. J. Collings, J. C. dePaula, L. C. Turzo, and A. Terracina. 1998a. A non-conventional approach to supramolecular formation dynamics. The kinetics of assembly of DNA-bound porphyrins. J. Am. Chem. Soc. 120:5873-5878.
21. Pasternack, R. F., J. I. Goldsmith, S. Szep, and E. J. Gibbs. 1998b. A spectroscopic and thermodynamic study of porphyrin/DNA supramolecular assemblies. Biophys. J. 75:1024-1031.
22. Pasternack, R. F., P. R. Huber, P. Boyd, G. Engasser, L. Francesconi, E. Gibbs, P. Fasella, G. C. Venture and L. deC. Hinds. 1972. On the aggregation of meso-substituted water soluble porphyrins. J. Am. Chem. Soc. 94:4511-4517.
23. Pasternack, R. F., K. F. Schaefer, and P. Hambright. 1994. Resonance light scattering studies of porphyrin diacid aggregates. Inorg. Chem. 33: 2062-2065.
24. Renault, A., P.-F. Lenne, C. Zakri, A. Aradian, C. Venien-Bryan, and F. Amblard. 1999. Surface-induced polymerization of actin. Biophys. J. 76:1580-1590.
25. Ribo, J. M., J. Crusats, J.-A. Farrera, and M. L. Valero. 1994. Aggregation in water solutions of tetrasodium diprotonated meso-tetrakis(4-sulfonatophenyl)porphine. J. Chem. Soc. Chem. Commun. 681-682.
26. Rubires, R., J. Crusats, Z. El-Hachemi, T. Jaramillo, M. Lopez, E. Valls, J. A. Farrera, and J. M. Ribo. 1999. Self-assembly in water of the sodium salts of meso-sulfonatophenyl substituted porphyrins. New J. Chem. 189-198.
27. Scheibe, G. 1936. Variability of the absorption spectra of some sensitizing dyes and its cause. Angew. Chem. 49:563.
28. Sundstrom, V., T. Gilbro, R. A. Gadonas, and A. Piscaska. 1988. Annihilation of singlet excitons in J aggregates of pseudoisocyanine (PIC) studied by pico- and subpicosecond spectroscopy. J. Chem. Phys. 89: 2754-2762.