A spectroscopic and thermodynamic study of porphyrin/DNA supramolecular assemblies

Biophysical Journal

Volumn 75, Issue 2, 1998, Pages 1024-1031

  Pasternack, Robert F ^a   Goldsmith, Jonas I ^a   Szép, Szilvia ^a   Gibbs, Esther J ^b  

^a SWARTHMORE COLLEGE   (United States)

^b GOUCHER COLLEGE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; PORPHYRIN;

ARTICLE; CIRCULAR DICHROISM; DNA STRUCTURE; MODEL; SPECTROSCOPY; STRUCTURE ANALYSIS; THERMODYNAMICS;

LORENTZIA;

EID: 0031871611     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(98)77591-5     Document Type: Article

References (31)

1. Biolo, R., G. Jori, M. Soncin, R. Pratesi, U. Vanni, B. Richter, M. E. Kenney, and M. A. Rodgers. 1994. Photodynamic therapy of B16 pigmented melanoma with liposome-delivered Si(IV)-naphthalocyanine. Photochem. Photobiol. 59:362-365.
2. Bjornholm, T., T. Geisler, J. Larsen, and M. Jorgensen. 1992. Nonlinear optical phenomena due to donor-acceptor interfaces created in Langmuir-Blodgett films. J. Chem. Soc. Chem. Commun. 815-817.
3. Borissevitch, I., Tominaga, T. T., Imasato, H., and Tabak, M. 1997. Resonance light scattering study of aggregation of two water soluble porphyrins due to their interaction with bovine serum albumin. Anal. Chim. Acta. 343:281-286.
4. Borovkov, V. V., M. Anikin, K. Wasa, and Y. Sakata. 1996. Structurally controlled porphyrin-aggregation process in phospholipid membranes. Photochem. Photobiol. 63:477-482.
5. Bustamante, C., S. Gurrieri, R. F. Pasternack, R. Purrello, and E. Rizzarelli. 1994. Interaction of water-soluble porphyrins with single- and double-stranded polyribonucleotides. Biopolymers. 34:1099-1104.
6. Gibbs, E. J., I. Tinoco, Jr., M. F. Maestre, P. A. Ellinas, and R. F. Pasternack. 1988. Self-assembly of porphyrins on nucleic acid templates. Biochem. Biophys. Res. Commun. 157:350-358.
7. Harriman, A., and J.-P. Sauvage. 1996. A strategy for constructing photosynthetic models: porphyrin-containing modules assembled around transition metals. Chem. Soc. Rev. 25:41-48.
8. Holland, J. F., R. E. Teets, P. M. Kelly, and A. Timmick. 1977. Correction of right-angle fluorescence measurements for the absorption of excitation radiation. Anal. Chem. 49:706-710.
9. Horng, M.-L., and E. L. Quitevis. 1993. Excited-state dynamics of polymer-bound J-aggregates. J. Am. Chem. Soc. 115:12408-12415.
10. Ivanov, V. I., L. E. Minchenkova, A. K. Schyolkina, and A. I. Poletayev. 1973. Different conformations of double-stranded nucleic acid in solution as revealed by circular dichroism. Biopolymers. 12:89-110.
11. Lindsey, J. S. 1991. Self-assembly in synthetic routes to molecular devices. Biological principles and chemical perspectives: a review. New. J. Chem. 15:153-180.
12. Mallamace, F., N. Micali, L. Monsu Scolaro, R. F. Pasternack, A. Romeo, A. Terracina, and S. Trusso. 1996b. Porphyrin aggregation in aqueous solutions: small angle and quasielastic light scattering. J. Mol. Struct. 383:255-260.
13. Mallamace, F., N. Micali, S. Trusso, L. Monsu Scolaro, A. Romeo, A. Terracina, and R. F. Pasternack. 1996a. Experimental evidence for self-similar structures in the aggregation of porphyrins in aqueous solutions. Phys. Rev. Lett. 76:4741-4744.
14. Marzilli, L. G., G. Petho, M. Lin, M. S. Kim, and D. W. Dixon. 1992. Tentacle porphyrins. DNA interactions. J. Am. Chem. Soc. 114: 7575-7577.
15. Miller, G. A. 1978. Fluctuation theory of the resonance enhancement of Rayleigh scattering in absorbing media. J. Phys. Chem. 82:616-618.
16. Oosawa, F., and M. Kasai. 1962. A theory of linear and helical aggregation of macromolecules. J. Mol. Biol. 4:10-21.
17. Pachter, J. A., C. H. Huang, V. H. Duvernay, A. W. Prestayko, and S. T. Crooke. 1982. Viscometric and fluorometric studies of deoxyribonucleic acid interactions of several new anthracyclines. Biochemistry. 21: 1541-1547.
18. Pancoska, P., M. Urbanova, L. Bednarova, K. Vacek, V. Z. Paschenko, S. Vasiliev, P. Malon, and M. Kral. 1990. Models of pigment-protein interactions in photosynthetic systems: tetraphenylporphine complexes with polycationic sequential polypeptides. Absorption, circular dichroism and fluorescence properties. Chem. Phys. 147:401-413.
19. Pasternack, R. F., R. A. Brigandi, M. J. Abrams, A. P. Williams, and E. J. Gibbs. 1990. Interactions of porphyrins and metalloporphyrins with single-stranded poly(dA). Inorg. Chem. 29:4483-4486.
20. Pasternack, R. F., C. Bustamante, P. J. Collings, A. Giannetto, and E. J. Gibbs. 1993. Porphyrin assemblies on DNA as studied by a resonance light-scattering technique. J. Am. Chem. Soc. 115:5393-5399.
21. Pasternack, R. F., and P. J. Collings. 1995. Resonance light scattering: a new technique for studying chromophore aggregation. Science 269: 935-939.
22. Pasternack, R. F., A. Giannetto, P. Pagano, and E. J. Gibbs. 1991. Self-assembly of porphyrins on nucleic acids and polypeptides. J. Am. Chem. Soc. 113:7799-7800.
23. Pasternack, R. F., and E. J. Gibbs. 1993. Porphyrin assembly formation on helical biopolymers. J. Inorg. Organomet. Polymers. 3:77-88.
24. Pasternack, R. F., and E. J. Gibbs. 1996. Porphyrin and metalloporphyrin interactions with nucleic acids. In Metal Ions in Biological Systems 33. Probing of Nucleic Acids by Metal Complexes of Small Molecules. A. Sigel and H. Sigel, editors. Marcel Dekker, Inc., New York. 367-397.
25. Pasternack, R. F., E. J. Gibbs, P. C. Collings, J. C. dePaula, L. C. Turzo, and A. Terracina. 1998. A non-conventional approach to supramolecular formation dynamics. The kinetics of assembly of DNA-bound porphyrins. J. Am. Chem. Soc. In press.
26. Pasternack, R. F., E. J. Gibbs, and J. J. Villafranca. 1983. Interactions of porphyrins with nucleic acids. Biochemistry. 22:2406-2414.
27. Pasternack, R. F., S. Gurrieri, R. Lauceri, and R. Purrello. 1996. Single-stranded nucleic acids as templates for porphyrin assembly formation. Inorg. Chim. Acta. 246:7-12.
28. Pasternack, R. F., P. R. Huber, P. Boyd, G. Engasser, L. Francesconi, E. Gibbs, P. Fasella, G. Cerio Venturo, and L. de C. Hinds. 1972. On the aggregation of meso-substituted water soluble porphyrins. J. Am. Chem. Soc. 94:4511-4517.
29. Sari, M. A., J. P. Battioni, D. Dupre, D. Mansuy, and J. B. Le Pecq. 1990. Interaction of cationic porphyrins with DNA. Importance of the number and position of the charges and minimum structural requirements for intercalation. Biochemistry. 29:4205-4215.
30. Stanton, S. G., R. Pecora, and B. S. Hudson. 1981. Resonance enhanced dynamic Rayleigh scattering. J. Chem. Phys. 75:5615-5626.
31. Stewart, G. M., and M. A. Fox. 1996. Chromophore-labeled dendrons on light harvesting antennae. J. Am. Chem. Soc. 118:4354-4360.