cDNA expression arrays reveal incomplete reversal of age-related changes in gene expression by calorie restriction

Mechanisms of Ageing and Development

Volumn 115, Issue 3, 2000, Pages 157-174

  Han, Eun Soo ^a   Hilsenbeck, Susan G ^a   Richardson, Arlan ^a   Nelson, James F ^a  

^a UNIVERSITY OF TEXAS HEALTH SCIENCE CENTER AT SAN ANTONIO   (United States)

Author keywords

Aging; Calorie restriction; Gene expression

Indexed keywords

COMPLEMENTARY DNA;

AGE; AGED; AGING; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; CALORIC RESTRICTION; CONTROLLED STUDY; GENE EXPRESSION; LIVER; MALE; MOUSE; NONHUMAN; NORTHERN BLOTTING; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION;

AGING; ANIMALS; BLOTTING, NORTHERN; DNA, COMPLEMENTARY; ENERGY INTAKE; FOOD DEPRIVATION; GENE EXPRESSION; LIVER; MALE; MICE; MICE, INBRED C57BL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION;

RODENTIA;

EID: 0033935569     PISSN: 00476374     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0047-6374(00)00119-6     Document Type: Article

References (57)

1. Amstrong S.M., Redman J.R. Melatonin: A chronobiotic with anti-aging properties. Med. Hypoth. 34(4):1991;300-309.
2. Barrows C.H. Nutrition, aging and genetic program. Am. J. Clin. Nutr. 25:1972;829.
3. Carrillo M.C., Kitani K., Kamai S., Sato Y., Miyasaka K., Ivy G.O. The effect of a long-term (6 months) treatment with (-)deprenyl on antioxidant enzymes activities in selective brain regions in old female Fischer 344 rats. Biochem. Pharmacol. 47(8):1994;1333-1338.
4. Chatterjee B., Fernandes G., Yu B.P., Song C., Kim J.H., Demyan W., Roy A.K. Calorie restriction delays age-dependent loss in androgen responsiveness of the rat liver. FASEB J. 3:1989;169-173.
5. Chee M., Yang R., Hubbell E., Berno A., Huang X.C., Stern D., Winkler J., Lockhart D.J., Morris M.S., Fodor S.P.A. Accessing genetic information with high-density DNA arrays. Science. 274:1996;610-614.
6. Chen J.J., Yu B.P. Detoxification of reactive aldehydes in mitochondria: effects of age and dietary restriction. Aging (Milano). 8:1996;334-340.
7. Coeytaux S., Juillerat M., Ruffieux C., Gauldie J., Guigoz Y. Serum T-kininogen levels increase two to four months before death. J. Biol. Chem. 267:1992;10665-10669.
8. Cranklin D.S., Xiong Y. Induction of p18INK4c and its predominant association with CDK4 and CDK6 during myogenic differentiation. Mol. Biol. Cell. 7(10):1996;1587-1599.
9. DeRisi J., Penland L., Brown P.O., Bittner M.L., Meltzer P.S., Ray M., Chen Y., Su Y.A., Trent J.M. Use of a cDNA microarray to analyse gene expression patterns in human cancer. Nat. Genet. 14:1996;457-460.
10. DeRisi J.L., Iyer V.R., Brown P.O. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science. 278:1997;680-686.
11. Freisleben H.J., Lehr F., Fuchs J. Life span of immunosupressed NMR1-mice is increased by deprenyl. J. Neural. Transm. Suppl. 41:1994;231-236.
12. Gerber J.K., Gogel E., Berger C., Wallisch M., Muller F., Grummt I., Grummt F. Termination of mammalian rDNA replication: polar arrest of replication fork movement by transcription termination factor TTF-1. Cell. 90(3):1997;559-567.
13. Henderson C.J., McLaren A.W., Moffat G.J., Bacon E.J., Wolf C.R. Pi-class glutathione S-transferase: regulation and function. Chem.-Biol. Int. 111-112:1998;69-82.
14. Heydari A.R., Wu B., Takahashi R., Strong R., Richardson A. Expression of heat shock protein 70 is altered by age and diet at the level of transcription. Mol. Cell Biol. 13:1993;2909-2918.
15. Hilsenbeck S.G., Criedrichs W.E., Schiff R., O'Connell P., Hansen R.K., Osborne C.K., Fuqua S.A.W. Statistical analysis of array expression data as applied to the problem of tamoxifen resistance. J. Natl. Cancer Inst. 91(5):1999;453-459.
16. Horbach G.J., Venkatraman J.T., Fernandes G. Food restriction prevents the loss of isoaCRole inducible cytochrome P-450 mRNA and enzyme levels in aging rats. Biochem. Int. 20:1990;725-730.
17. Huang R.P., Adamson E.D. A biological role for Egr-1 in cell survival following ultra-violet irradiation. Oncogene. 10(3):1995;467-475.
18. Huang R.P., Fan Y., de Belle I., Niemeyer C., Gottardis M.M., Mercola D., Adamson E.D. Decreased Egr-1 expression in human, mouse and rat mammary cells and tissues correlates with tumor formation. Int. J. Can. 72(1):1997;102-109.
19. Kalu D.K., Herbert D.C., Hardin R.R., Yu B.P., Kaplan G., Jacob J.W. Mechanism of dietary modulation of calcitonin levels in Fischer rats. J. Gerontol. 43:1988;B125-B131.
20. Laganiere S., Yu B.P. Effect of chronic food restriction in aging rats. II. Liver cytosolic antioxidants and related enzymes. Mech. Aging Dev. 48(3):1989;221-230.
21. Langst G., Blank T.A., Becker P.B., Grummt I. RNA polymerase I transcription on nucleosomal templates: the transcription termination factor TTF-1 induces chromatin remodeling and relieves transcriptional repression. EMBO J. 16(4):1997;760-768.
22. Lee C.K., Klopp R.G., Weindruch R., Prolla T.A. Gene expression profile of aging and its retardation by caloric restriction. Science. 285:1999;1390-1393.
23. Lindell T.J., Duffy J.J., Byrnes B. Transcription in aging: the response of rat liver nuclear RNA polymerase to cycloreximide in vivo. Mech. Aging Dev. 19:1982;63-71.
24. Lockhart D.J., Dong H., Byrne M.C., Follettie M.T., Gallo M.V., Chee M.S., Mittmann M., Wang C., Kobayashi M., Horton H., Brown E. Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat. Biotech. 14:1996;1675-1680.
25. Masoro E.J. Food restriction in rodents: An evaluation of its role in the study of aging. J. Gerontol. 43:1988;B59-B64.
26. Masoro, E.J., 1990. Assessment of nutritional components in prolongation of life and health by diet. Nutr. Aging 31-34.
27. Masoro E.J. Retardation of aging processes by nutritional means. Ann. NY Acad. Sci. 672:1992;29-35.
28. Masoro E.J., Austad S.N. The evolution of the antiaging action of dietary restriction: a hypothesis. J. Gerontol. 52:1996;B391.
29. Mckay M.J., Troelstra C., van der Spek P., Kanaar R., Smit B., Hagemeijer A., Bootsma D., Hoeijmakers J.H. Sequence conservation of the rad21 Schizosaccharomyces pombe DNA double-strand break repair gene in human and mouse. Genomics. 36(2):1996;305-315.
30. Mullaart E., Lohman P.H., Berend F., Vijg J. DNA damage metabolism and aging. Mutat. Res. 237:1990;189-210.
31. Nguyen C., Rocha D., Granjeaud S., Baldit M., Bernart K., Naquet P., Jordan B.R. Differential gene expression in the murine thymus assayed by quantitative hybridization of arrayed cDNA clones. Genomics. 29:1995;207-216.
32. Ohkubo K., Ogata S., Misumi Y., Takami N., Sinohara H., Ikehara Y. Cloning, structure and expression of cDNA for mouse contrapsin and related protein. Biochem. J. 276(Pt 2):1991;337-342.
33. Pahlavani M.A., Haley-Zitlin V., Richardson A. Influence of dietary restriction on gene expression: changes in the transcription of specific genes. Yu B.P. Modulation of The Aging Process by Dietary Restriction. 1994;143-156 CRC Press, Boca Raton, FL.
34. Pietu G., Alibert O., Guichard V., Lamy B., Bois F., Leroy E., Matiage-Samson R., Houlgatte R., Soularue P., Aufcray C. Novel gene transcripts preferentially expressed in human muscles revealed by quantitative hybridization of a high density cDNA array. Genome Res. 6:1996;492-503.
35. Rao G., Xia E., Nadakavukaren M.J., Richardson A. Effect of dietary restriction on age-dependent changes in the expression of antioxidant enzymes in rat liver. J. Nutr. 120:1990;602-609.
36. Richardson A. The effect of age and nutrition on protein synthesis by cells and tissues from mammals. Waston R.R. Handbook of Nutrition and Aging. 1985;31 CRC Press, Boca Raton, FL.
37. Richardson A., Butler J.A., Rutherford M.S., Semsei I., Gu M.Z., Fernandes G., Chiang W.H. Effect of age and dietary restriction on the expression of α2β-globulin. J. Biol. Chem. 262:1987;12821.
38. Sambrook J., Fritsch E.F., Maniatis T. Molecular Cloning - A Laboratory Manual. 1989;Cold Spring Harbor Press, Spring Harbor, NY.
39. Schena M., Shalon D., Heller R., Chai A., Brown P.O., Davis R.W. Parallel human genome analysis: microarray-based expression monitoring of 1000 genes. Proc. Natl. Acad. Sci. USA. 93:1996;10614-10619.
40. Semsei I., Rao G., Richardson A. Changes in the expression of superoxide dismutase and catalase as a function of age and dietary restriction. Biochem. Biophys. Res. Commun. 164:1989;620.
41. Song C.S., Rao T.R., Demyan W.F., Mancini M.A., Chatterjee B., Roy A.K. Androgen receptor messenger ribonucleic acid (mRNA) in the rat liver: Changes in mRNA levels during maturation, aging, and calorie restriction. Endocrinology. 128:1991;349-356.
42. Spearman M.E., Leibman K.C. Aging selectively alters glutathione S-transferase isozyme concentrations in liver and lung cytosol. Drug Met. Dis. 12(5):1984;661-671.
43. Stambaugh K., Jacobson K.A., Jiang J.L., Liang B.T. A novel cardioprotective function of adenosine A1 and A3 receptors during prolonged simulated ischemia. Am. J. Physiol. 273:1997;H501-505.
44. Stohs S.J., Al-Turk W.A., Angle C.R., Heinicke R.J. Glutathione S-transferase activity in liver, lung and intestinal mucosa of aging female mice. Gen. Pharmacol. 13(6):1982;519-522.
45. Strong R., Moore M.A., Hale C., Burke W.J., Armbecht H.J., Richardson A. Age-related changes in adrenal catecholamine content and tyrosin hydroxylase gene expression: Effects of dietary restriction. Armbrecht J.A., Coe R., Wongsurawat N. Endocrine Function and Aging. 1990;218-227 Springer-Verlag, Berlin.
46. Ting J.P., Painter A., Zeleznik-Le N.J., MacDonald G., Moore T.M., Brown A., Schwartz B.D. YB-1 DNA-binding protein represses interferon gamma activation of class II major histocompatibility complex genes. J. Exp. Med. 179(5):1994;1605-1611.
47. Turk B., Turk V., Turk D. Structural and functional aspects of papain-like cysteine proteinases and their protein inhibitors. Biol. Chem. 378(3-4):1997;141-150.
48. Van Lieshout E.M., Bedaf M.M., Pieter M., Ekkel C., Nijhoff W.A., Peters W.H. Effects of dietary anticarcinogens on rat gastrointestinal glutathione S-transferase theta 1-1 levels. Carcinogenesis. 19(11):1998;2055-2057.
49. Van Remmen H., Ward W., Sabia R.V., Richardson A. Effect of age on gene expression and protein degradation. Masoro E.J. Handbook of Physiology Volume on Aging. 1995;171-234 Oxford University Press, New York.
50. Van Remmen H., Williams M.D., Heydari A.R., Takahashi R., Chung H.Y., Yu B.P., Richardson A. Expression of genes coding for antioxidant enzymes and heat shock proteins is altered in primary cultures of rat hepatocytes. J. Cell Physiol. 166:1996;453-460.
51. Waggoner S., Gu M.-Z., Chinag W.-H., Richardson A. The effect of dietary restriction on the expression of a variety of genes. Harrison D.E. Genetic Effects on Aging II. 1990;255-273 The Telfor Press.
52. Weindruch R., Walford R.L. The Retardation of Aging and Disease by Dietary Restriction. 1988;436 Charles C. Thomas, Springfield, IL.
53. Wodicka L., Dong H., Mittmann M., Ho M.-H., Lockhart D.J. Genome-wide expression monitoring in Saccharomyces cerevisiae. Nat. Biotech. 15:1997;1359-1367.
54. Write W.W., Fiore C., Zirkin B.R. The effect of aging on the seminiferous epithelium of the brown Norway rat. J. Androl. 14(2):1993;110-117.
55. Young V.R. Diet as a modulator of aging and longevity. Fed. Proc. Am. Soc. Exp. Biol. 38:1979;1994.
56. Yu S., Ozawa M., Naved A.F., Miyauchi T., Muramatsu H., Muramatsu T. cDNA cloning and sequence analysis of a novel calcium binding protein with oligoproline motif. Cell Str. Fun. 20(4):1995;263-268.
57. Zindy F., Quelle D.E., Roussel M.F., Sherr C.J. Expression of the p16INK4a tumor suppressor versus other INK4 family members during mouse development and aging. Oncogene. 15(2):1997;203-211.