Review: Perinucleolar structures

Journal of Structural Biology

Volumn 129, Issue 2-3, 2000, Pages 233-240

  Huang, S ^a  

^a NORTHWESTERN UNIVERSITY   (United States)

Author keywords

Perinucleolar structures; PNCs; RNA binding proteins; RNA metabolism; SNBs

Indexed keywords

NUCLEAR PROTEIN; RNA BINDING PROTEIN;

CELL LABELING; CELL TRANSFORMATION; CELL ULTRASTRUCTURE; CELLULAR DISTRIBUTION; HUMAN; HUMAN CELL; NUCLEOLUS; PRIORITY JOURNAL; PROTEIN LOCALIZATION; REVIEW; TRANSCRIPTION REGULATION;

EID: 0033925532     PISSN: 10478477     EISSN: None     Source Type: Journal    
DOI: 10.1006/jsbi.2000.4247     Document Type: Article

References (58)

1. S. Altman Ribonuclease P J. Biol. Chem. 265 1990 20053 20056
2. J.T. Anderson S.M. Wilson K.V. Datar M.S. Swanson NAB2: A yeast nuclear polyadenylated RNA-binding protein essential for cell viability Mol. Cell. Biol. 13 1993 2730 2741
3. M. Ashiya P.J. Grabowski A neuron-specific splicing switch mediated by an array of pre-mRNA repressor sites: Evidence of a regulatory role for the polypyrimidine tract binding protein and a brain-specific PTB counterpart RNA 3 1997 996 1015
4. J.R. Chamberlain Y. Lee W.S. Lane D.R. Engelke Purification and characterization of the nuclear RNase P holoenzyme complex reveals extensive subunit overlap with RNase MRP Genes Dev. 12 1998 1678 1690
5. T. Chen F.-M. Boisvert D.P. Bazett-Jones S. Richard A role for the GSG domain in localizing Sam68 to novel nuclear structures in cancer cell lines Mol. Biol. Cell 10 1999 3015 3033
6. M.Y. Chou N. Rooke C.W. Turck D.L. Black hnRNP H is a component of a splicing enhancer complex that activates a c-src alternative exon in neuronal cells Mol. Cell. Biol. 19 1999 69 77
7. D.A. Clayton A nuclear function for RNase MRP Proc. Natl. Acad. Sci. USA 91 1994 4615 4617
8. S.C. Darr J.W. Brown N.R. Pace The varieties of RNase P Trends Biochem. Sci. 17 1992 178 182
9. M. Di Fruscio T. Chen S. Richard Two novel Sam68-like mammalian proteins SLM-1 and SLM-2: SLM-1 is a Src substrate during mitosis Proc. Natl. Acad. Sci. USA 96 1999 2710 2715
10. D.N. Frank N.R. Pace Ribonuclease P: Unity and diversity in a tRNA processing ribozyme Annu. Rev. Biochem. 67 1998 153 180
11. S.N. Garcia L. Pillus Net results of nucleolar dynamics Cell 97 1999 825 828
12. A. Ghetti S. Piñol-Roma W.M. Michael C. Morandi G. Dreyfuss hnRNP I, the polypyrimidine tract-binding protein: Distinct nuclear localization and association with hnRNAs Nucleic Acids Res. 20 1992 3671 3678
13. T.J. Gibson J.D. Thompson J. Heringa The KH domain occurs in a diverse set of RNA-binding proteins that include the antiterminator NusA and is probably involved in binding to nucleic acid FEBS Lett. 324 1993 361 366
14. C. Gooding G.C. Roberts C.W. Smith Role of an inhibitory pyrimidine element and polypyrimidine tract binding protein in repression of a regulated alpha-tropomyosin exon RNA 4 1998 85 100
15. J.S. Grossman M.I. Meyer Y.C. Wang G.J. Mulligan R. Kobayashi D.M. Helfman The use of antibodies to the polypyrimidine tract binding protein (PTB) to analyze the protein components that assemble on alternatively spliced pre-mRNAs that use distant branch points RNA 4 1998 613 625
16. fyn Mol. Biol. Cell 10 1999 3909 3926
17. C.U. Hellen T.V. Pestova M. Litterst E. Wimmer The cellular polypeptide p57 (pyrimidine tract-binding protein) binds to multiple sites in the poliovirus 5′ nontranslated region J. Virol. 68 1994 941 950
18. S. Huang T. Deerinck M.H. Ellisman D.L. Spector The dynamic organization of the perinucleolar compartment in the mammalian cell nucleus J. Cell. Biol. 137 1997 965 974
19. S. Huang T. Deerinck M.H. Ellisman D.L. Spector The perinucleolar compartment and transcription J. Cell Biol. 143 1998 35 47
20. S.L. Hunt R.J. Jackson Polypyrimidine-tract binding protein (PTB) is necessary, but not sufficient, for efficient internal initiation of translation of human rhinovirus-2 RNA RNA 5 1999 344 359
21. M.R. Jacobson L.G. Gao K. Taneja R.H. Singer Y.L. Wang T. Pederson Nuclear domains of the RNA subunit of RNase P J. Cell Sci. 110 1997 829 837
22. M.R. Jacobson L.G. Gao Y.L. Wang T. Pederson Dynamic localization of RNase MRP RNA in the nucleolus observed by fluorescent RNA cytochemistry in living cells J. Cell Biol. 131 1995 1649 1659
23. M.R. Jacobson T. Pederson Localization of signal recognition particle RNA in the nucleolus of mammalian cells Proc. Natl. Acad. Sci. USA 95 1998 7981 7986
24. N. Jarrous J.S. Wolenski D. Wesolowski C. Lee S. Altman Localization in the nucleolus and coiled bodies of protein subunits of the ribonucleoprotein ribonuclease P J. Cell Biol. 146 1999 559 572
25. A.R. Jones T. Schedl Mutations in GLD-1, a female germ cell-specific tumor suppressor gene in C. elegans, affect a conserved domain also found in Sam68 Genes Dev. 9 1995 1491 1504
26. A. Kaminski S.L. Hunt J.G. Patton R.J. Jackson Direct evidence that polypyrimidine tract binding protein (PTB) is essential for internal initiation of translation of encephalomyocarditis virus RNA RNA 1 1995 924 938
27. A. Kaminski R.J. Jackson The polypyrimidine tract binding protein (PTB) requirement for internal initiation of translation of cardiovirus RNAs is conditional rather than absolute RNA 4 1998 626 638
28. B. Lee A.G. Matera D.C. Ward J. Craft Association of RNase mitochondrial RNA processing enzyme with ribonuclease P in higher ordered structures in the nucleolus: A possible coordinate role in ribosome biogenesis Proc. Natl. Acad. Sci. USA 93 1996 11471 11476
29. D.Y. Lee D.A. Clayton RNase mitochondrial RNA processing correctly cleaves a novel R loop at the mitochondrial DNA leading-strand origin of replication Genes Dev. 11 1997 582 592
30. C.H. Lin J.G. Patton Regulation of alternative 3′ splice site selection by constitutive splicing factors RNA 1 1995 234 245
31. H. Lou R.F. Gagel S.M. Berget An intron enhancer recognized by splicing factors activates polyadenylation Genes Dev. 10 1996 208 219
32. H. Lou D.M. Helfman R.F. Gagel S.M. Berget Polypyrimidine tract-binding protein positively regulates inclusion of an alternative 3′-terminal exon Mol. Cell. Biol. 19 1999 78 85
33. A.G. Matera D.C. Ward Nucleoplasmic organization of small nuclear ribonucleoproteins in cultured human cells J. Cell Biol. 121 1993 715 727
34. A.G. Matera M.R. Frey K. Margelot S.L. Wolin A perinucleolar compartment contains several RNA polymerase III transcripts as well as the polypyrimidine tract-binding protein, hnRNP I J. Cell Biol. 129 1995 1181 1193
35. H. Min C.W. Turck J.M. Nikolic D.L. Black A new regulatory protein, KSRP, mediates exon inclusion through an intronic splicing enhancer Genes Dev. 11 1997 1023 1036
36. G. Musco G. Stier C. Joseph M.A. Morelli A. Pastore Three-dimensional structure and stability of the KH domain: Molecular insights into the fragile X syndrome Cell 85 1996 237 245
37. J.G. Patton E.B. Porro J. Galceran P. Tempst B. Nadal-Ginard Cloning and characterization of PSF, a novel pre-mRNA splicing factor Genes Dev. 7 1993 393 406
38. T. Pederson The plurifunctional nucleolus Nucleic Acids Res. 26 1998 3871 3876
39. I. Perez C.H. Lin J.G. McAfee J.G. Patton Mutation of PTB binding sites causes misregulation of alternative 3′ splice site selection in vivo RNA 3 1997 764 778
40. S. Piñol-Roma M.S. Swanson J.G. Gall G. Dreyfuss A novel heterogeneous nuclear RNP protein with a unique distribution on nascent transcripts J. Cell Biol. 109 1989 2575 2587
41. T.R. Reddy W. Xu J.K.L. Mau C.D. Goodwin M. Suhasini H. Tang K. Frimpong D.W. Rose F. Wong-Staal Inhibition of HIV replication by dominant negative mutants of Sam68, a functional homolog of HIV-1 Rev Nat. Med. 5 1999 635 642
42. n triplet repeat RNA-binding protein in patients with myotonic dystrophy and in myotonin protein kinase knockout mice Proc. Natl. Acad. Sci. USA 94 1997 13221 13226
43. S.C. Shih K.P. Claffey Regulation of human vascular endothelial growth factor mRNA stability in hypoxia by heterogeneous nuclear ribonucleoprotein L J. Biol. Chem. 274 1999 1359 1365
44. W. Shou J.H. Seol A. Shevchenko C. Baskerville D. Moazed Z.W. Chen J. Jang A. Shevchenko H. Charbonneau R.J. Deshaies Exit from mitosis is triggered by Tem1-dependent release of the protein phosphatase Cdc14 from nucleolar RENT complex Cell 97 1999 233 244
45. R. Singh J. Valcarcel M.R. Green Distinct binding specificities and function of higher eukaryotic polypyrimidine tract-binding proteins Science 268 1995 1173 1176
46. J. Southby C. Gooding C.W. Smith Polypyrimidine tract binding protein functions as a repressor to regulate alternative splicing of alpha-actinin mutually exclusive exons Mol. Cell. Biol. 19 1999 2699 2711
47. A.F. Straight W. Shou G.J. Dowd C.W. Turck R.J. Deshaies A.D. Johnson D. Moazed Net1, a Sir2-associated nucleolar protein required for rDNA silencing and nucleolar integrity Cell 97 1999 245 256
48. S.J. Taylor D. Shalloway An RNA-binding protein associated with src through its SH2 and SH3 domains in mitosis Nature 368 1994 867 871
49. n triplet repeat RNA-binding protein and its expression in myotonic dystrophy Nucleic Acids Res. 24 1996 4407 4414
50. J. Valcarcel F. Gebauer Post-transcriptional regulation: The dawn of PTB Curr. Biol. 7 1997 1
51. H. van Eenennaam G.J. Pruijn V. W.J. hPop4: A new protein subunit of the human Rnase MRP and RNase P ribonucleoprotein Nucleic Acids Res. 27 1999 2465 2472
52. J.P. Venables C. Vernet S.L. Chew D.J. Elliott R.B. Cowmeadow J. Wu H.J. Cooke K. Artzt I.C. Eperon T-STAT/ETOILE: A novel relative of Sam68 that interacts with an RNA-binding protein implicated in spermatogenesis Hum. Mol. Genet. 8 1999 959 969
53. R. Visintin E.S. Hwang A. Amon Cfi1 prevents premature exit from mitosis by anchoring Cdc14 phosphatase in the nucleolus Nature 398 1999 818 823
54. L.L. Wang S. Richard A.S. Shaw p62 association with RNA is regulated by tyrosine phosphorylation J. Biol. Chem. 270 1995 2010 2013
55. G.W. Witherell C.S. Schultz-Witherell E. Wimmer Cis -acting elements of the encephalomyocarditis virus internal ribosomal entry site Virology 214 1995 660 663
56. S.L. Wolin J.A. Steitz The Ro small cytoplasmic ribonucleoproteins: Identification of the antigenic protein and its binding site on the Ro RNAs Proc. Natl. Acad. Sci. USA 81 1984 1996 2000
57. L. Zhang W. Liu P.J. Grabowski Coordinate repression of a trio of neuron-specific splicing events by the splicing regulator PTB RNA 5 1999 117 130
58. Y. Zhang Y. Xiong Mutations in human ARF exon 2 disrupt its nucleolar localization and impair its ability to block nuclear export of MDM2 and p53 Mol. Cell 3 1999 579 591