Cloning of genes participating in aerobic biodegradation of p-cumate from Rhodopseudomonas palustris

Mitochondrial DNA

Volumn 11, Issue 1-2, 2000, Pages 9-20

  Puskás, László G ^a,b   Inui, Masayuki ^a   Kele, Zoltán ^c   Yukawa, Hideaki ^a  

^a RESEARCH INSTITUTE OF INNOVATIVE TECHNOLOGY FOR THE EARTH   (Japan)

^b INSTITUTE OF EXPERIMENTAL MEDICINE   (Hungary)

^c UNIVERSITY OF SZEGED   (Hungary)

Author keywords

Aerobic biodegradation; molecular cloning; p cumate; R iu loyseir foiiioi prnil.is t; tris

Indexed keywords

AEROBIC METABOLISM; BENZOIC ACID DERIVATIVE; CELL GROWTH; ESCHERICHIA COLI; GENE CLUSTER; GENE INDUCTION; GENE MUTATION; MICROBIAL DEGRADATION; PSEUDOMONAS PUTIDA; RHODOPSEUDOMONAS PALUSTRIS; SEQUENCE HOMOLOGY; TRANSCRIPTION REGULATION;

AEROBIOSIS; AMINO ACID SEQUENCE; BASE SEQUENCE; BENZOATES; BIODEGRADATION, ENVIRONMENTAL; CLONING, MOLECULAR; DNA, BACTERIAL; GENE EXPRESSION; GENE EXPRESSION REGULATION, BACTERIAL; GENES, BACTERIAL; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; MUTAGENESIS, INSERTIONAL; OPERON; OXYGENASES; RHODOPSEUDOMONAS; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; TRANSCRIPTION, GENETIC;

EID: 0033923529     PISSN: 19401736     EISSN: 19401744     Source Type: Journal    
DOI: 10.3109/10425170009033965     Document Type: Article

References (32)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. (1990). Basic local alignment search tool. J. Mol. Biol. 215, 403-410.
2. Benson, D., Lipman, D. J., and Ostell, J. (1993). GenBank, Nucleic Acids Res. 21, 2963-2965. (Pubitemid 23223594)
3. Boronin, A. M., Tsoi, T. V., Kosheleva, I. A., Arinbasarov, M. U., and Adanin, V. M. (1989). Cloning of Pseudomonas putida genes responsible for the primary stages of oxidation of naphthalene in Escherichia coll. Genctika 25, 226-237.
4. 2 fixation by PNSB. p. 593-596. In Inui, T., Anpo, M., Izui, K., Yanagida, S., and Yamaguchi, T. (eds.), Advances in Chemical Conversions for Mitigating Carbon Dioxide. Studies in Surface Science and Catalysis, Vol. 114. Elsevier Science B. V., Netherlands. (Pubitemid 128779871)
5. Dagley, S. (1986). Biochemistry of aromatic hydrocarbon degradation in pseudomonads. p. 527-555. In J. R. Sokatch (ed.), The bacteria, vol. 10. The Biology of Pseudomonas, Academic Press, New York.
6. Eaton, R. W. (1996). p-Cumate catabolic pathway in Pseudomomis putida Fl: cloning and characterization of DNA carrying the cmt operon. J. Bacterial. 178, 1351-1362. (Pubitemid 26073393)
7. Eaton, R. W. (1997). p-Cymene catabolic pathway in Pseudomonas putida Fl: cloning and characterization of DNA encoding conversion of p-cymene to p-cumate. J. Bacterial. 179, 3171-3180. (Pubitemid 27202990)
8. Egland, P. G., Pelletier, D. A., Dispensa, M., Gibson, J., and Harwood, C. S. (1997). A cluster of bacterial genes for anaerobic benzene ring biodegradation. Proc. Natl. Acad. Sci. USA 94, 6484-6489. (Pubitemid 27270711)
9. Elder, D. J. E., and Kelly, D. J. (1994). The bacterial degradation of benzoic acid and benzenoid compounds under anaerobic conditions: unifying trends and new perspectives. FEMS Microbial. Rev. 13, 441-468. (Pubitemid 24134900)
10. Fuenmayor, S. L., Wild, M., Boyes, A. L., and Williams, PA. 1998. A gene cluster encoding steps in conversion of naphthalene to gentisate in Pseudomonas sp. strain U2. J. Bacleriol. 180, 2522-2530. (Pubitemid 28217369)
11. Fujii, T., Nakazawa, A., Sumi, N., Tani, H., Ando, A., and Yabuki, M. (1983). Utilization of alcohols by Rhodopseudomonas sp. No. 7. isolated from n-propanol-enrichment cultures. Agric. Biol. Chcm. 47, 2747-2753.
12. Gibson, D. T., and Subramanian, V. (1984). Microbial degradation of aromatic hydrocarbons, p. 181-252. In D. T. Gibson (ed.), Microbial degradation of organic compounds, Marcel Dekker, Inc., New York.
13. Gibson, J., and Harwood, C. S. (1995). Degradation of aromatic compounds by nonsulfur purple bacteria, p. 991-1003, In Blankenship, R. E., M. T. Madigan, and C. E. Bauer (eds.), Anoxygenic Photosynthetic Bacteria. Advances in Photosynthesis, Kluwer Academic Publishers, Netherlands.
14. Gibson, K. J., and Gibson, J. (1992). Potential early intermediates in anaerobic benzoate degradation by Rhodopseudomonns palustris, Appl. Environ. Microbiol, 58, 696-698.
15. Goodwin, T. W., and Mercer, E. I. (1983). Introduction to Plant Biochemistry, 2nd ed. Pergamon Press, Oxford.
16. Haak, B., Fetzner, S., and Lingens, F. 1995. Cloning, nucleotide sequence, and expression of plasmid-encoded genes for the two-component 2-haIobenzoate 1, 2-dioxygenase from Pseudomonas cepacia 2CBS. J. Bacteriol. 177, 667-675.
17. Harborne, J. B. (1980). Plant phenolics. p. 329-399, In: Bell, E. A., and B. V. Charlwood (eds.), Secondary plant products, Vol. 8, Encyclopedia of Plant Physiology, Springer-Verlag, New York.
18. Harwood, C. S., and Gibson, J. (1988). Anaerobic and aerobic metabolism of diverse aromatic compounds by the photosynthetic bacterium Rhodopseudomonas palustris. Appl. Environ. Microbiol. 54, 712-717.
19. Healy, J. B. Jr., Young, L. Y., and Reinhard, M. (1980). Methanogenic decomposition of ferulic acid, a model lignin derivative. Appl Environ. Microbiol. 39, 436-444. (Pubitemid 10112165)
20. Hegeman, G. D. (1967). The metabolism of p-hydroxybenzoate by Rhodopseudomonas palustrisand its regulation. Arch. Mikrobiol. 59, 143-148.
21. Inui, M., Dumay, V., Zahn, K., Yamagata, H., and Yukawa, H. (1997). Structural and functional analysis of the phosphoenolpyruvate carboxylase gene from the purple nonsulfur bacterium Rhodopsctidotuouas palustris No. 7. J. Bacteriol. 179, 4942-4945. (Pubitemid 27339744)
22. Inui, M., Nakata, K., Roh, J. H., Zahn, K., and Yukawa, H. (1999). Molecular and functional characterization of the Rhodopseudomonas palustris No. 7 phosphoenolpyruvate carboxykinase gene. J. Bacterial. 181, 2689-2696. (Pubitemid 29211080)
23. Kulakov, L. A., Delcroix, V. A., Larkin, M. J., Ksenzenko, V. N., Kulakova, A. N. (1997). Cloning of new Rhodococcus extradiol dioxygenase genes and study of their distribution in different Rhodococcus strains, (unpublished).
24. Merkel, S. M., Eberhard, A. E., Gibson, J., and Harwood, C. S. (1989). Involvement of Coenzyme A thioesters in anaerobic metabolism of 4-hydroxybenzoate by Rhodopseudomonas palustris, J. Bacteriol. 171, 1-7.
25. Miller, V. L., and Mekalanos, J. J. (1988). A novel suicide vector and its use in construction of insertion mutations: osmoregulation of outer membrane proteins and virulence determinants in Vibrio cholcrac requires toxR. J. Bacteriol. 170, 2575-2583.
26. Neidle, E. L., Hartnelt, C., Ornston, L. N., Bairoch, A., Rekik, M., and Harayama, S. (1991). Nucleotide sequences of the Acinetobacter calcoaceticus benABC genes for benzoate 1, 2-dioxygenase reveal evolutionary relationships among multicomponent oxygenases, J. Bacteriol. 173, 5385-5395.
27. Romiae, M. F., Stillwell, L. C., Wong, K.-K., Thurston, S. J., Sisk, E. C., Sensen, C. W., Gaasterland, T., Saffer J. P., and Fredrickson, J. K. (1998). Complete sequence of a 184 kb catabolic plasmid from Sphingomonas aromaticivorans strain F199. (unpublished).
28. Sato, S. I., Ouchiyama, N., Kimura, T., Nojiri, H., Yamane, H., and Omori, T. (1997). Cloning of genes involved in carbazole degradation of Pseudomonas sp. strain CA10: nucleotide sequences of genes and characterization of meta-cleavage enzymes and hydrolase. J. Bacteriol. 179, 4850-4858.
29. Schmid, A., Rothe, B., Altenbuchner, J., Ludwig, W., and Engesser, K. H. (1997). Characterization of three distinct extradiol dioxygenases involved in mineralization of dibenzofuran by Terrabacter sp. strain DP0360. J. Bacteriol. 179, 53-62. (Pubitemid 26428465)
30. Shepherd, J. M., and Lloyd-Jones, G. (1998). Novel carbazole degradation genes of Sphingomonas CB3: sequence analysis, transcription and molecular ecology. Biochem. Biophys. Res. Commun. 247, 129-135. (Pubitemid 28412538)
31. Simon, M. J., Osslund, T. D., Saunder, R., Ensley, B. D., Suggs, S., Harcourt, A. A., Suen, W.-C., Cruden, D. L., Gibson, D. T., and Zylstra, G. J. (1993). Sequences of genes encoding naphthalene dioxygenase in Pseudomonas putida strain G7 and NCIB 9816-4. Gene 127, 31-37. (Pubitemid 23140442)
32. Takizawa, N., Kaida, N., Torigoe, S., Moritani, T., Sawada, T., Satoh, S., and Kiyohara, H. (1994). Identification and characterization of genes encoding polycyclic aromatic hydrocarbon dioxygenase and polycyclic aromatic hydrocarbon dihydrodiol dehydrogenase in Pseudomonas putida OUS82. J. Bacteriol. 176, 2444-2449. (Pubitemid 24118198)