Duplication and diversification of the apolipoprotein CI (APOCI) genomic segment in association with retroelements

Journal of Molecular Evolution

Volumn 50, Issue 4, 2000, Pages 391-396

  Freitas, Elizabeth M ^a,b,d   Gaudieri, Silvana ^a,c   Zhang, Wen Jie ^a   Kulski, Jerzy K ^a   Van Bockxmeer, Frank M ^a,b   Christiansen, Frank T ^a,b   Dawkins, Roger L ^a  

^a UNIVERSITY OF WESTERN AUSTRALIA   (Australia)

^b ROYAL PERTH HOSPITAL   (Australia)

^c NATIONAL INSTITUTE OF GENETICS   (Japan)

^d Department of Clinical Immunology ^*  (Australia)

Author keywords

Alu; Apolipoprotein CI; Diversity; Duplication; Hepatic control region; Retroelements

Indexed keywords

APOLIPOPROTEIN C1;

ARTICLE; GENE CLUSTER; GENE DUPLICATION; GENE SEQUENCE; MULTIGENE FAMILY; NUCLEOTIDE SEQUENCE; PROTEIN ANALYSIS;

MYA; PLATYRRHINI;

EID: 0033921692     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s002399910042     Document Type: Article

References (24)

1. Allan CM, Walker D, Taylor JM (1995) Evolutionary duplication of a hepatic control region in the human apolipoprotein E gene locus. J Biol Chem 270:26278-26281
2. Allan CM, Taylor S, Taylor JM (1997) Two hepatic enhancers, HCR.1 and HCR.2, coordinate the liver expression of the entire human apolipoprotein E/C-I/C-IV/C-II gene cluster. J Biol Chem 272: 29113-29119
3. Arcot SS, Wang Z, Weber JL, Deininger PL, Batzer MA (1995) Alu repeats: A source for the genesis of primate microsatellites. Genomics 29:136-144
4. Britten RJ (1994) Evidence that most human Alu sequences were inserted in a process that ceased about 30 million years ago. Proc Natl Acad Sci USA 91:6148-6150
5. Dang Q, Walker D, Taylor S, Allan C, Chin P, Fan J, Taylor J (1995) Structure of the hepatic control region of the human apolipoprotein E/C-I gene locus. J Biol Chem 270:22577-22585
6. Denny CT, Shah NP, Ogden S, Willman C, McConnell T, Crist W, Carroll A, Witte ON (1989) Localization of preferential sites of rearrangement within the BCR gene in Philadelphia chromosome-positive acute lymphoblastic leukemia. Proc Natl Acad Sci USA 86:4254-4258
7. Erickson LM, Kim HS, Maeda N (1992) Junctions between genes in the haptoglobin gene cluster of primates. Genomics 14:948-958
8. Epstein N, Nahor O, Silver J (1990) The 3′ ends of Alu repeats are highly polymorphic. Nucleic Acids Res 18:4634
9. Fitch DHA, Bailey WJ, Tagle DA, Goodman M, Sieu L, Slightom JL (1991) Duplication of the gamma-globin gene mediated by L1 long interspersed repetitive elements in an early ancestor of simian primates. Proc Natl Acad Sci USA 88:7396-7400
10. Gaudieri S, Giles KM, Kulski JK, Dawkins RL (1997a) Duplication and polymorphism in the MHC: Alu generated diversity and polymorphism within the PERB11 gene family. Hereditas 127:37-46
11. Gaudieri S, Kulski JK, Balmer L, Giles KM, Inoko H, Dawkins RL (1997b) Retroelements and segmental duplications in the generation of diversity within the MHC. DNA Sequence 8:137-141
12. Gaudieri S, Kulski JK, Dawkins RL, Gojobori T (1999) Different evolutionary histories in two subgenomic regions of the major histocompatibility complex. Genome Res 9:541-549
13. Jong MC, Hofker MH, Havekes LM (1999) Role of ApoCs in lipoprotein metabolism. Functional differences between ApoC1, ApoC2 and ApoC3. Arterioscler Thromb Vasc Biol 19:472-484
14. Kulski JK, Gaudieri S, Bellgard MI, Balmer L, Giles K, Inoko H, Dawkins RL (1997) The evolution of MHC diversity by segmental duplication and transposition of retroelements. J Mol Evol 45:599-609
15. Kulski JK, Gaudieri S, Martin A, Dawkins RL (1999) Coevolution of PERB11 (MIC) and HLA Class I Genes with HERV-16 and retroelements by extended genomic duplication. J Mol Evol 49:84-97
16. Lauer SJ, Walker D, Elshourbagy NA, Reardon CA, Levy-Wilson B, Taylor JM (1988) Two copies of the human apolipoprotein C-I gene are linked closely to the apolipoprotein E gene. J Biol Chem 263:7277-7286
17. Lehrman MA, Russell DW, Goldstein JL, Brown MS (1987) Alu-Alu recombination deletes splice acceptor sites and produces secreted low density lipoprotein receptor in a subject with familial hypercholesterolemia. J Biol Chem 262:3354-3361
18. Luo C, Li W, Moore M, Chan L (1986) Structure and evolution of the apolipoprotein multigene family. J Mol Biol 187:325-340
19. Markert ML, Hutton JJ, Wiginton DA, States JC, Kaufman RE (1988) Adenosine deaminase (ADA) deficiency due to deletion of the ADA gene promotor and first exon by homologous recombination between two Alu elements. J Clin Invest 81:1323-1327
20. Nadir E, Margalit H, Gallily T, Ben-Sasson SA (1996) Microsatellite spreading in the human genome: Evolutionary mechanisms and structural implications. Proc Natl Acad Sci USA 93:6470-6475
21. Pastorcic M, Birnbaum S, Hixson JE (1992) Baboon apolipoprotein C-I: cDNA and gene structure and evolution. Genomics 13:368-374
22. Raisonnier A (1991) Duplication of the apolipoprotein C-I gene occurred about forty million years ago. J Mol Evol 32:211-219
23. Shachter NS, Ebara T, Ramakrishnan R, Steiner G, Breslow JL, Ginsberg HN, Smit JD (1996) Combined hyperlipidemia in transgenic mice overexpressing human apolipoprotein C1. J Clin Invest 98: 846-855
24. Shen RM, Batzer MA, Deininger PL (1991) Evolution of the master Alu gene(s). J Mol Evol 33:311-320