Transcript profiling: A tool to assess the development of conifer embryos

In Vitro Cellular and Developmental Biology - Plant

Volumn 36, Issue 3, 2000, Pages 155-162

  Cairney, John ^a   Xu, Nanfei ^a,b   Mackay, John ^a   Pullman, Jerry ^a  

^a GEORGIA INSTITUTE OF TECHNOLOGY   (United States)

^b MONSANTO COMPANY   (United States)

Author keywords

Embryogenesis; Gene expression; Loblolly pine; Suspensor

Indexed keywords

COMPLEMENTARY DNA; CONIFER; DATA BASE; DIFFERENTIAL DISPLAY; EMBRYO DEVELOPMENT; GENETIC MANIPULATION; GENETIC TRANSCRIPTION; LOBLOLLY PINE; MESSENGER RNA; RECALCITRANCE; SOMATIC EMBRYOGENESIS; TISSUE CULTURE; UNITED STATES; ZYGOTE;

EID: 0033907678     PISSN: 10545476     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11627-000-0031-5     Document Type: Conference Paper

References (50)

1. Attree, S. M.; Fowke, L. C. Embryogeny of gymnosperms: advances in synthetic seed technology of conifers. Plant Cell Tiss. Org. Cult. 35:1-35; 1993.
2. Baker, J.; Steele, C.; Dure III, L. Sequence and characterization of 6 LEA proteins and their genes from cotton. Plant Mol. Biol. 11:277-291; 1988.
3. Becwar, M. R.; Blush, T. D.; Brown, D. W.; Chesick, E. E. Multiple paternal genotypes in embryogenic tissue derived from individual immature loblolly pine seeds. Plant Cell Tiss. Org. Cult. 26:37-44; 1991.
4. Becwar, M. R.; Pullman, G. S. Somatic embryogenesis in loblolly pine (Pinus taeda L.). In: Mohan Jain, S.; Gupta, P. K.; Newton, R. J. eds. Gymnosperms (Somatic embryogenesis in woody plants. Vol. 3). Dordrecht, The Netherlands: Kluwer Academic Publishers; 1995; 287-301.
5. Behrendt, U.; Zoglauer, K. Boron controls suspensor development in embryogenic cultures of Larix decidua. Physiol. Plant 97:321-326; 1996.
6. Bouchez, D.; Hofte, H. Functional genomics in plants. Plant Physiol. 118:725-732; 1998.
7. Bray, E. A. Regulation of gene expression by endogenous ABA during drought stress. In: Davies, W. J.; Jones, H. G. eds. Abscisic acid: physiology and biochemistry. Oxford. UK: Bios Scientific Publishers Ltd.; 1990; 81-98.
8. Cairney, J.; Xu, N.; Pullman, G. S.; Ciavatta, V. T.; Johns, B. Differential display: a tool to follow natural and somatic embryo development in loblolly pine. TAPPI Biol. Sci. Symp., 19-23 October 1997, San Francisco, CA, Atlanta, GA: TAPPI Press; 1997; 85-91.
9. Cairney, J.; Xu, X.; Pullman, G. S.; Ciavatta, V. T.; Johns, B. Natural and somatic embryo development in loblolly pine: gene expression studies using differential display and DNA arrays. Appl. Biochem. Biotechnol. 77-79:5-17; 1999.
10. Cionini, P. G. The suspensor and its role in embryo development in Phaseolus (Papilionaceae): A review. Atti Soc. Toxc. Sci. Nat. Mem., Ser. B 94:151-161; 1987.
11. Desprez, T.; Amselem, J.; Caboche, M.; Höfte, II. Differential gene expression in Arabidopsis monitored using cDNA arrays. Plant J. 14:643-652; 1998.
12. Dong, J-Z.; Dunstan, D. I. Expression of abundant mRNAs during somatic embryogenesis of white spruce [Picea glauca (Moench) Voss). Planta 199:459-466; 1996.
13. Dong, J-Z.; Dunstan, D. I. Characterization of cDNAs representing five abscisic acid-responsive genes associated with somatic embryogenesis in Picea glauca, and their responses to abscisic acid stereostructure. Planta 203:448-453; 1997.
14. Dong, J-Z.; Dunstan, D. I. Cloning and characterization of six embryogenesis-associated cDNAs from somatic embryos of Picea glauca and their comparative expression during zygotic embryogenesis. Plant Mol. Biol. 39:859-864; 1999.
15. Feirer, R. P. The biochemistry of conifer embryo development: amino acids, polyamines and storage proteins. In: Mohan Jain, S.; Gupta, P.; Newton, R. eds. Somatic embryogenesis in woody plants. Vol. 1. Dordrecht, The Netherlands: Kluwer Academic Publishers; 1995; 317-336.
16. Handley, L. Future uses of somatic embryogenesis in woody plantation species. In: Mohan Jain, S.; Gupta, P.; Newton, R. eds. Somatic embryogenesis in woody plants. Vol. 1. Dordrecht, The Netherlands: Kluwer Academic Publishers; 1995; 415-434.
17. Jain, S. M.; Dong, N.; Newton, R. J. Somatic embryogenesis in slash pine (Pinus elliottii) from immature embryo culture in vitro. Plant Sci. 65:233-241; 1989.
18. Jarvis, S. B.; Taylor, M. S.; MacLeod, M. R.; Davies, H. Cloning and characterization of the cDNA clones of three genes that are differentially expressed during dormancy-breakage in the seeds of Douglas fir (Pseudotsuga menziesii). J. Plant Physiol. 147:559-566; 1996.
19. Kapik, R. J.; Dinus, R. J.; Dean, J. F. D. Abscisic acid during zygotic embryogenesis in Pinus taeda. Tree Physiol. 15:405-409; 1995.
20. Lashkari, D. A.; DeRisi, J. L.; McCusker, J. H.; Namath, A. F.; Gentile, C.; Hwang, S. Y.; Brown, P. O.; Davis , R. W. Yeast microarrays for genome wide parallel genetic and gene expression analysis. Proc. Natl. Acad. Sci. USA 94:13057-13062; 1997.
21. Liang, P.; Averboukh, L.; Pardee, A. B. Distribution and cloning of eukaryotic mRNAs by means of differential display: refinement and optimization. Nucleic Acids Res. 21:3269-3275; 1993.
22. Liang, P.; Pardee, A. B. Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science 257:967-971; 1992.
23. Lipshutz, R. J.; Fodor, S. P. A.; Gingeras, T. R.; Lockhart, D. J. High density synthetic oligonucleotide arrays. Nature/Genetics 21:20-24; 1998.
24. Litvay, J. D.; Verma, D. C.; Johnson, M. A. Influences of a loblolly pine culture medium and its components on growth and somatic embryogenesis of the wild carrot. Plant Cell Rep. 4:325-328; 1985.
25. Marshall, A.; Hodgson, J. DNA chips: an array of possibilities. Nature Biotechnol. 16:27-31; 1998.
26. McCullough, L.; Dean, C. A. Beyond traditional tree improvement. TAPPI Biol. Sci. Symp., 19-23 October 1997, San Francisco, CA, Atlanta, GA: TAPPI Press; 1997; 189-190.
27. Minocha, R.; Minocha, S. C.; Simola, L. K. Somatic embryogenesis and polyamines in woody plants. In: Mohan Jain, S.; Gupta, P.; Newton, R. eds. Somatic embryogenesis in woody plants. Vol. 1. Dordrecht, The Netherlands: Kluwer Academic Publishers; 1995; 337-359.
28. Minocha, R.; Smith, D. R.; Reeves, C.; Steele, K. D.; Minocha, S. C. Polyamine levels during the development of zygotic and somatic embryos of Pinus radiata. Physiol. Plant 105:155-164; 1999.
29. Misra, S. Molecular analysis of zygotic and somatic conifer embryos. In: Mohan Jain, S.; Gupta, P.; Newton, R. eds. Somatic embryogenesis in woody plants. Vol. 1. Dordrecht, The Netherlands: Kluwer Academic Publishers; 1995; 119-142.
30. Misra, S.; Chatthai, M.; Tranbarger, T. J.; Forward, B. S.; Kaukinen, K. H. Differentially regulated gene sets in Douglas fir seeds and somatic embryos. In: Ahuja, M. R.; Boerjan, W.; Neale, D. B. eds. Somatic cell genetics and molecular genetics of trees. Dordrecht, The Netherlands: Kluwer Academic Publishers; 1996; 197-204.
31. Okamuro, J. K.; Goldberg, R. B. Regulation of plant gene expression. General principles in the biochemistry of plants. Vol. 15. San Diego, CA: Academic Press; 1989; 2-82.
32. Panitz, R.; Borijuk, L.; Manteuffel, R.; Wobus, U. Transient expression of storage-protein genes during early embryogenesis of Vicia faba: synthesis and metabolization of vicilin and legumin in the embryo, suspensor and endosperm. Planta 196:765-774; 1995.
33. Pullman, G. S. Osmotic measurements of whole ovules during loblolly pine embryo development. TAPPI Biol. Sci. Symp., 19-23 October 1997, San Francisco, CA, Atlanta, GA: TAPPI Press; 1997; 41-48.
34. Pullman, G. S.; Cairney, J.; Peter, G. Clonal forestry and genetic engineering: where we stand and future prospects and impacts. TAPPI J. 81:57-64; 1998.
35. Pullman, G. S.; Webb, D. T. An embryo staging system for comparison of zygotic and somatic embryo development. TAPPI R&D Div. Biol. Sci. Symp., 3-6 October, Minneapolis, MN. Atlanta, GA: TAPPI Press; 1994; 31-34.
36. Ramsey, G. DNA chips: state-of-the-art. Nature Biotechnol. 16:40-44; 1998.
37. Rosok, O.; Odeberg, J.; Rode, M.; Stokke, T.; Funderud, S.; Smeland, E.; Lundeberg, J. Solid-phase method for differential display of genes expressed in hematopoietic stem-cells. Bio Techniques 21:114-121; 1996.
38. Schena, M. Genome analysis with gene expression microarrays. BioEssays 18:427-431; 1996.
39. Schwartz, B. W.; Vernon, D. M.; Meinke, D. W. Development of the suspensor: differentiation, communication and programmed cell death during plant embryogenesis. In: Larkins, B. A.; Vasil, I. K. eds. Cellular and molecular biology of plant seed development (Advances in cellular and molecular biology of plants, Vol. 4). Dordrecht, The Netherlands: Kluwer Academic Publishers: 1997; 53-72.
40. Schwartz, B. W.; Yeung, E. C.; Meinke, D. W. Disruption of morphogenesis and transformation of the suspensor in abnormal suspensor mutants of Arabidopsis. Development 120:3235-3245; 1994.
41. Skriver, K.; Mundy, J. Gene expression in response to abscisic acid and osmotic stress. Plant Cell 2:503-512; 1990.
42. Spurr, A. R. Histogenesis and organization of the embryo in Pinus strobus L. Am. J. Bot. 36:629-641; 1949.
43. Tautorus, T. E.; Fowke, L. C.; Dunstan, D. I. Somatic embryogenesis in conifers. Can. J. Bot. 69:1873-1899; 1991.
44. Teasdale, R. D.; Dawson, P. A.; Woolhouse, W. H. Mineral nutrient requirements of a loblolly pine (Pinus taeda) cell suspension culture. Evaluation of a medium formulated from seed composition data. Plant Physiol. 82:942-945; 1986.
45. Thomas, T. L. Gene expression during plant embryogenesis and germination: An overview. Plant Cell 5:1401-1410; 1993.
46. Tzfira, T.; Zuker, A.; Altman, A. Forest-tree biotechnology: genetic transformation and its application to future forests. Trends. Biotechnol. 16:439-446; 1998.
47. Xu, N.; Johns, B.; Pullman, G.; Cairney, J. Rapid and reliable differential display results from minute amounts of tissue: mass cloning and characterization of differentially expressed genes from loblolly pine embryos. Plant Mol. Biol. Rep. 15:377-391; 1997.
48. Yadegari, R.; de Paiva, G. R.; Laux, T.; Koltunow, A. M.; Apuya, N.; Simmerman, J. L.; Fischer, R. L.; Harada, J. J.; Goldberg, R. B. Cell differentiation and morphogenesis are uncoupled in Arabidopsis raspberry embryos. Plant Cell 6:1713-1729; 1994.
49. Yeung, E. C.; Meinke, D. W. Embryogenesis in angiosperms: development of the suspensor. Plant Cell 4:1371-1381; 1993.
50. Zhang, J. Z.; Sommerville, C. R. Suspensor derived polyembryony caused by altered expression of valyl-tRNA synthetase in the twn2 mutant of Arabidopsis. Proc. Natl. Acad. Sci. USA 94:7349-7355; 1997.