An electron spin resonance study of DNA dynamics using the slowly relaxing local structure model

Journal of Physical Chemistry B

Volumn 104, Issue 22, 2000, Pages 5372-5381

  Liang, Zhichun ^a   Freed, Jack H ^a   Keyes, Robert S ^b   Bobst, Albert M ^b  

^a Department of Obstetrics Gynecology   (United States)

^b UNIVERSITY OF CINCINNATI   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CORRELATION METHODS; MATHEMATICAL MODELS; MOLECULAR DYNAMICS; MOLECULAR STRUCTURE; OLIGOMERS; RELAXATION PROCESSES;

SLOWLY RELAXING LOCAL STRUCTURE (SRLS) MODEL;

DNA;

EID: 0033737138     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp994219f     Document Type: Article

References (41)

1. Hustedt, E. J.; Spaltenstein, A.; Kirchner, J. J.; Hopkins, P. B.; Robinson, B. H. Biochemistry 1993, 32, 1774.
2. Keyes, R. S.; Bobst, A. M. Biochemistry 1995, 34, 9265.
3. Hustedt, E. J.; Kirchner, J. J.; Spaltenstein, A.; Hopkins, P. B.; Robinson, B. H. Biochemistry 1995, 34, 4369.
4. Patkowski, A.; Eimer, W.; Dorfmüller, Th. Biopolymers 1990, 30, 975.
5. Lipari, G.; Szabo, A. Biochemistry 1981, 20, 6250.
6. Lipari, G.; Szabo, A. J. Am. Chem. Soc. 1982, 104, 4546.
7. Lipari, G.; Szabo, A. J. Am. Chem. Soc. 1982, 104, 4559.
8. Alam, T. M.; Drobny, G. P. Chem. Rev. 1991, 91, 1545.
9. Borer, P. N.; LaPalnte, S. R.; Kumar, A.; Zanatta, N.; Martin, A.; Hakkinen, A.; Levy, G. C. Biochemistry 1994, 33, 2441.
10. Gaudin, F.; Chanteloup, L.; Thuong, N. T.; Lancelot, G. Magn. Reson. Chem. 1997, 35, 561.
11. Robinson, B. H.; Drobny, G. Annu. Rev. Biophys. Biomol. Struct. 1995, 24, 523.
12. Robinson, B. H.; Mailer, C.; Drobny, G. Annu. Rev. Biophys. Biomol. Struct. 1997, 26, 629.
13. Keyes, R. S.; Bobst, E. V.; Cao, Y. Y.; Bobst, A. M. Biophys. J. 1997, 72, 282.
14. Keyes, R. S.; Bobst, A. M. In Biological Magnetic Resonance, Volume 14: The Next Millennium; Berliner, L., Ed.; Plenum Press: New York, 1998; Chapter 7.
15. Schurr, J. M.; Fujimoto, B. S.; Wu, P.; Song, L. In Topics in Fluorescence Spectroscopy, Volume 3: Biological Applications; Lakowicz, J. R., Ed.; Plenum Press: New York, 1992.
16. Nuutero, S.; Fujimoto, B. S.; Flynn, P. F.; Reid, B. R.; Ribeiro, N. S.; Schurr, J. M. Biochemistry 1994, 34, 463.
17. Schurr, J. M.; Fujimoto, B. S. Biopolymers 1999, 49, 355.
18. Barone, F.; Matzeu, M.; Mazzei, F.; Pedone, F. Biophys. Chem. 1999, 78, 259.
19. Sortie, S. S.; Pecora, R. Macromolecules 1988, 21, 1437.
20. Patkowski, A.; Eimer, W.; Dorfmüller, Th. Biopolymers 1990, 30, 93.
21. Eimer, W.; Williamson, J. R.; Boxer, S. C.; Pecora, R. Biochemistry 1990, 29, 799.
22. Brauns, E. B.; Madaras, M. L.; Coleman, R. S.; Murphy, C. J.; Berg, M. A. J. Am. Chem. Soc. 1999, 121, 11644.
23. Polnaszek, C. F.; Freed, J. H. J. Phys. Chem. 1975, 79, 2283.
24. Freed, J. H. J. Chem. Phys. 1977, 66, 4183.
25. Polimeno, A.; Freed, J. H. J. Phys. Chem. 1995, 99, 10995.
26. Liang, Z.; Freed, J. H. J. Phys. Chem. 1999, 103, 6384.
27. Liang, Z.; Freed, J. H. Manuscript in preparation, 1999.
28. Barnes, J. P.; Liang, Z.; Mchaourab, H. S.; Freed, J. H.; Hubbell, W. L. Biophys. J. 1999, 76, 3298.
29. Meirovitch, E.; Nayeem, A.; Freed, J. H. J. Phys. Chem. 1984, 88, 3454.
30. Bobst, A. M.; Pauly, G. T.; Keyes, R. S.; Bobst, E. V. FEBS Lett. 1988, 228, 33.
31. Keyes, R. S. Probing Nucleic Acid Dynamics and Protein-Nucleic Acid Interaction. Ph.D. Dissertation, University of Cincinnati, 1994.
32. Duh, J.-H.; Bobst, A. M. Helv. Chim. Acta 1991, 74, 739.
33. Tirado, M. M.; Torre, J. G. de la J. Chem. Phys. 1980, 73, 1986.
34. Freed, J. H. In Spin Labeling: Theory and Applications; Berliner, L., Ed.; Academic Press: New York, 1976; p 53.
35. Schneider, D. J.; Freed, J. H. Adv. Chem. Phys. 1989, 73, 387.
36. Schneider, D. J.; Freed, J. H. In Biological Magnetic Resonance, Berliner, L. J., Reuben, J., Eds.; Plenum Publishing Corp.: New York, 1989; Vol. 8.
37. Persichetti, R. A.; Sinden, R. R.; Duh, J.-L.; Bobst, A. M. Synth. Commun. 1991, 21, 1013.
38. Mcharourab, H. S.; Lietzow, M. A.; Hideg, K.; Hubbell, W. L. Biochemistry 1996, 35, 7692.
39. Mchaourab, H. S.; Oh, K. J.; Fang, C. J.; Hubbell, W. L. Biochemistry 1997, 36, 307.
40. Schurr, J. M.; Schmitz, K. S. Annu. Rev. Phys. Chem. 1986, 37, 271.
41. Budil, D. B.; Lee, S.; Saxena, S.; Freed, J. H. J. Magn. Reson. 1996, 120, 155.