Structural and dynamical properties of two DNA oligomers with the same base composition and different sequence

Biophysical Chemistry

Volumn 78, Issue 3, 1999, Pages 259-269

  Barone, F ^a   Matzeu, M ^a   Mazzei, F ^a   Pedone, F ^b  

^a Ist Superiore San Viale Regina E   (Italy)

^b SAPIENZA UNIVERSITY OF ROME   (Italy)

Author keywords

DNA dynamics; DNA structure; FPA

Indexed keywords

DNA; DNA FRAGMENT; OLIGOMER;

ANISOTROPY; ARTICLE; CIRCULAR DICHROISM; CONFORMATION; DENATURATION; DNA BASE COMPOSITION; DNA FOOTPRINTING; DNA SEQUENCE; DNA STRUCTURE; FLUORESCENCE POLARIZATION; HYDRODYNAMICS; MOLECULAR DYNAMICS; PRIORITY JOURNAL; THERMOSTABILITY;

ALGORITHMS; ANISOTROPY; AUTORADIOGRAPHY; BASE COMPOSITION; BASE SEQUENCE; CIRCULAR DICHROISM; DNA; DNA FOOTPRINTING; FLUORESCENCE POLARIZATION; NUCLEIC ACID CONFORMATION; NUCLEIC ACID DENATURATION; SPECTROPHOTOMETRY, ULTRAVIOLET; THERMODYNAMICS;

EID: 0032898541     PISSN: 03014622     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0301-4622(99)00026-5     Document Type: Article

References (30)

1. Berman H.M., Olson W.K., Beveridge D.L.et al. Biophys. J. 63:1992;751.
2. Bossi L., Smith D.M. Cell. 39:1984;643.
3. Nordheim A., Lafer E.M., Peck L.J., Wang J.C., Stollar B.D., Rich A. Cell. 31:1982;309.
4. Neidle S. Nature Struct. Biol. 5:1998;754.
5. Schurr J.M. Chem. Phys. 84:1984;71.
6. Collini M., Chirico G., Baldini G., Bianchi M.E. Biopolymers. 36:1995;211.
7. Duhamel J., Kanyo J., Dinter-Gottlieb G., Lu P. Biochemistry. 35:1996;16687.
8. Barone F., Chirico G., Matzeu M., Mazzei F., Pedone F. Eur. Biophys. J. 27:1998;137.
9. Sun J.S., Garestier T., Helene C. Curr. Opin. Struct. Biol. 3:1996;345.
10. Franchet-Beuzit J., Spotheim-Maurizot M., Sabattier B., Blazy Baudras B., Charlier M. Biochemistry. 32:1993;2104.
11. Barone F., Belli M., Mazzei F. Radiat. Environ. Biophys. 33:1994;23.
12. J. Sambrook, E.F. Fritsch, T. Maniatis, Molecular Cloning, A Laboratory Manual, Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 1989.
13. Cantor C.R., Warshaw M.M., Shapiro H. Biopolymers. 9:1970;1059.
14. K.J. Breslauer, in: S. Agrawal (Ed.), Protocols for Oligonucleotides Conjugates (Methods in Molecular biology, vol. 26). Humana Press Inc, Totowa NJ, 1994, pp. 347-372.
15. Allison S.A., Schurr J.M. Chem. Phys. 41:1979;35.
16. Tirado M.M., Garcia de la Torre J. Chem. Phys. 73:1980;1986.
17. Chan S.S., Breslauer K.J., Hogan M.E.et al. Biochemistry. 29:1990;6161.
18. Nelson H.C., Finch J.T., Luisi B.F., Klug A. Nature. 330:1987;221.
19. Aymami J., Coll M., Frederick C.A., Wang A.H., Rich A. Nucleic Acid Res. 17:1989;3229.
20. Henner W.D., Grunberg S.M., Haseltine W.A. J. Biol. Chem. 257:1982;11750.
21. Sy D., Savoye C., Begusova M., Michalik V., Charlier M., Spotheim-Maurizot M. Int. J. Radiat. Biol. 72:1997;147.
22. Negri R., Costanzo G., Di Mauro E. Anal. Biochem. 197:1991;389.
23. Crothers D.M., Haran T.E., Nadeau J.G. J. Biol. Chem. 265:1990;7093.
24. Kochoyan M., Leroy J.L. Curr. Opin. Struct. Biol. 5:1995;329.
25. T.D. Tullius, in: F. Eckstein, D.M.J. Lilley (Eds.), Structural Studies of DNA Trough Cleavage by the Hydroxyl Radical (Nucleic Acids and Molecular Biology, vol. 3), Springer, Berlin, Heidelberg, New York, 1992, pp. 1-12.
26. Dickerson R.E., Drew H.R. J. Mol. Biol. 149:1981;761.
27. Sugimoto N., Nakano S., Yoneyama M., Honda K. Nucleic Acid Res. 24:1996;4501.
28. SantaLucia J. Proc. Natl. Acad. Sci. USA. 95:1998;1460.
29. Fujimoto B.S., Miller J.M., Ribeiro N.S., Schurr J.M. Biophys. J. 67:1994;304.
30. Barkley M.D., Zimm B.H. J. Chem. Phys. 70:1979;2991.