Protein-RNA sequence covariation in a ribosomal protein-tRNA complex

Biochemistry

Volumn 38, Issue 12, 1999, Pages 3633-3640

  GuhaThakurta, Debraj ^a   Draper, David E ^a  

^a JOHNS HOPKINS UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME RNA; RNA;

AMINO ACID SEQUENCE; ARTICLE; BINDING AFFINITY; CARBOXY TERMINAL SEQUENCE; NUCLEIC ACID BASE SUBSTITUTION; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN RNA BINDING; PROTEIN SECONDARY STRUCTURE; RNA SEQUENCE; SEQUENCE ANALYSIS;

AMINO ACID SEQUENCE; ANTI-BACTERIAL AGENTS; BACILLUS STEAROTHERMOPHILUS; BACTERIAL PROTEINS; BASE SEQUENCE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; MYCOPLASMA; NUCLEIC ACID CONFORMATION; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; RIBOSOMAL PROTEINS; RNA, BACTERIAL; RNA, RIBOSOMAL, 23S; SEQUENCE HOMOLOGY, AMINO ACID; THIOSTREPTON; ULTRAVIOLET RAYS;

MYCOPLASMA;

EID: 0033596910     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi9826411     Document Type: Article

References (45)

1. Gutell, R. R. (1993) Curr. Opin. Struct. Biol. 3, 313-322.
2. Gutell, R. R., Larsen, N., and Woese, C. R. (1994) Microbiol. Rev. 58, 10-26.
3. Jain, C., and Belasco, J. G. (1996) Cell 87, 115-125.
4. Schmidt, F. J., Thomson, J., Lee, K., Dijk, J., and Cundliffe, E. (1981) J. Biol. Chem. 256, 12301-12305.
5. El-Baradi, T. T. A. L., Regt, V. H. C. F. d., Einerhand, S. W. C., Teixido, J., Planta, R. J., Ballesta, J. P. G., and Raué, H. (1987) J. Mol. Biol. 195, 909-917.
6. Beauclark, A. A. D., Hummel, H., Holmes, D. J., Böck, A., and Cundliffe, E. (1985) Eur. J. Biochem. 151, 245-255.
7. Stark, M. J. R., Cundliffe, E., Dijk, J., and Stöffler, G. (1980) Mol. Gen. Genet. 180, 11-15.
8. Musters, W., Gonçalves, P. M., Boon, K., Raué, H. A., van Herikhuizen, H., and Planta, R. J. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 1469-1473.
9. Thompson, J., Musters, W., Cundliffe, E., and Dahlberg, A. E. (1993) EMBO J. 12, 1499-1504.
10. Ryan, P. C., and Draper, D. E. (1989) Biochemistry 28, 9949-9956.
11. Egebjerg, J., Douthwaite, S. R., Liljas, A., and Garrett, R. A. (1990) J. Mol. Biol. 213, 275-188.
12. Rosendahl, G., and Douthwaite, S. (1993) J. Mol. Biol. 234, 1013-1020.
13. Xing, Y., and Draper, D. E. (1996) Biochemistry 35, 1581-1588.
14. Xing, Y., GuhaThakurta, D., and Draper, D. E. (1997) Nat. Struct. Biol. 4, 24-27.
15. Markus, M. A., Hinck, A. P., Huang, S., Draper, D. E., and Torchia, D. A. (1997) Nat. Struct. Biol. 4, 70-77.
16. Hinck, A. P., Markus, M. A., Huang, S., Grzesiek, S., Kustonovich, I., Draper, D. E., and Torchia, D. A. (1997) J. Mol. Biol. 274, 101-113.
17. Brennan, R. G. (1993) Cell 74, 773-776.
18. Laing, L., and Draper, D. E. (1994) J. Mol. Biol. 237, 560-576.
19. Deng, W. P., and Nickoloff, J. A. (1992) Anal. Biochem. 200, 81-88.
20. Xing, Y., and Draper, D. E. (1995) J. Mol. Biol. 249, 319-337.
21. Ryan, P., Lu, M., and Draper, D. E. (1991) J. Mol. Biol. 221, 1257-1268.
22. Draper, D. E., Deckman, I. C., and Vartikar, J. V. (1988) Methods Emzymol. 164, 203-220.
23. Bradford, M. M. (1976) Anal. Biochem. 72, 248-254.
24. Lu, M., and Draper, D. E. (1994) J. Mol. Biol. 244, 572-585.
25. Sibold, C., and Subramanian, A. R. (1990) Biochim. Biophys. Acta 1050, 61-68.
26. Wang, Y., Lu, M., and Draper, D. E. (1993) Biochemistry 32, 12279-12282.
27. Bukhman, Y. V., and Draper, D. E. (1997) J. Mol. Biol. 273, 1020-1031.
28. Laing, L., Gluick, T. C., and Draper, D. E. (1994) J. Mol. Biol. 237, 577-587.
29. Lu, M., and Draper, D. E. (1995) Nucleic Acids Res. 23, 3426-3433.
30. Draper, D. E., Xing, Y., and Laing, L. (1995) J. Mol. Biol. 249, 231-238.
31. Egebjerg, J., Douthwaite, S. R., and Garrett, R. A. (1989) EMBO J. 5, 607-611.
32. Conn, G., Gutell, R. R., and Draper, D. E. (1998) Biochemistry 37, 11980-11988.
33. Noller, H. F., Kop, J., Wheaton, V., Brosius, J., Gutell, R. R., Kopylov, A. M., Dohme, F., Herr, W., Stahl, D. A., Gupta, R., and Woese, C. R. (1981) Nucleic Acids Res. 9, 6167-6189.
34. Gautheret, D., Damberger, S. H., and Gutell, R. R. (1995) J. Mol. Biol. 248, 27-43.
35. Fersht, A. R. (1987) Trends Biochem. Sci. 12, 301-304.
36. Lesser, D. R., Kurpiewski, M. R., Waters, T., Connolly, B. A. M., and Jen-Jacobson, L. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 7548-7552.
37. Oubridge, C., Ito, N., Evans, P. R., Teo, C.-H., and Nagai, K. (1994) Nature 372, 432-438.
38. Jessen, T. H., Oubridge, C., Teo, C. H., Pritchard, C., and Nagai, K. (1991) EMBO J. 10, 3447-56.
39. Johansson, H. E., Dertinger, D., LeCuyer, K. A., Behlen, L. S., Greef, C. H., and Uhlenbeck, O. C. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, 9244-9249.
40. Douglas, S. E., and Penny, S. L. (1998) J. Mol. Evol. (in press).
41. Mizuro, H., and Sundaralingam, M. (1978) Nucleic Acids Res. 5, 4451-4461.
42. Gautheret, D., Konings, D., and Gutell, R. R. (1995) RNA 1, 807-814.
43. Ackers, G. K., and Smith, F. R. (1985) Annu. Rev. Biochem. 54, 597-629.
44. Hou, Y.-M., and Schimmel, P. (1992) Biochemistry 31, 10310-10314.
45. Miller, W. T., Hou, Y.-M., and Schimmel, P. (1991) Biochemistry 30, 2635-2641.