Structural studies on a 2,3-diphosphoglycerate independent phosphoglycerate mutase from bacillus stearothermophilus

Journal of Structural Biology

Volumn 126, Issue 2, 1999, Pages 156-165

  Chander, Monica ^a   Setlow, Peter ^a   Lamani, Ejvis ^b   Jedrzejas, Mark J ^b  

^a UNIVERSITY OF CONNECTICUT HEALTH CENTER   (United States)

^b University of Alabama at Birmingham   (United States)

Author keywords

Bacillus; Circular dichroism; Crystallization; Glycolysis; Phosphoglycerate mutase; Spores; X ray diffraction

Indexed keywords

2,3 DIPHOSPHOGLYCERIC ACID; BACTERIAL ENZYME; GLYCERIC ACID; PHOSPHATE; PHOSPHOGLYCERATE MUTASE;

ARTICLE; CRYSTALLIZATION; ENZYME MECHANISM; ENZYME PURIFICATION; GEOBACILLUS STEAROTHERMOPHILUS; GLYCOLYSIS; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN FOLDING; X RAY DIFFRACTION;

BACTERIA (MICROORGANISMS); GEOBACILLUS STEAROTHERMOPHILUS;

EID: 0033563772     PISSN: 10478477     EISSN: None     Source Type: Journal    
DOI: 10.1006/jsbi.1999.4112     Document Type: Article

References (41)

1. 18O-labeled substrate, investigations of the phosphatase and phosphoryl transfer activities, and evidence for a phosphoryl-enzyme intermediate. Biochemistry. 16:1977;3054-3060.
2. Britton H. G., Carreras J., Grisolia S. Mechanism of action of 2,3-diphosphoglycerate-independent phosphoglycerate mutase. Biochemistry. 11:1971;4522-4533.
3. Campbell J. W., Watson H. C., Hodgson G. I. Structure of yeast phosphoglycerate mutase. Nature. 250:1974;301-303.
4. 2+ and is pH sensitive. Can. J. Microbiol. 44:1998;759-767.
5. Chang C. T., Wu G.-S. C., Yang J. T. Circular dichroic analysis of protein conformation: Inclusion of the β-turns. Anal. Biochem. 91:1978;13-31.
6. Doublie S. Preparation of selenomethionyl proteins for phase determination. Methods Enzymol. 276:1997;523-530.
7. Ducruix A., Giege R. Crystallization of Nucleic Acids and Proteins: A Practical Approach. 1992;Oxford Univ. Press.
8. Fothergill-Gilmore L. A., Michels P. A. M. Evolution of glycolysis. Progr. Biophys. Mol. Biol. 59:1993;105-235.
9. Fothergill-Gilmore L. A., Watson H. C. The phosphoglycerate mutases. Adv. Enzymol. 62:1989;227-313.
10. Galperin M. Y., Bairoch A., Koonin E. V. A superfamily of metalloenzymes unifies phosphopentomutase and cofactor-independent phosphoglycerate mutase with alkaline phosphatases and sulfatases. Protein Sci. 7:1998;1829-1838.
11. Grana X., Perez De La Ossa P., Broceno C., Stocker M., Garriage J., Puigdomenech P., Climent F. 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase is conserved among different phylogenetic kingdoms. Comp. Biochem. Physiol. 112B:1995;287-293.
12. Harada N., Sano K., Kimura M., Hosaka H., Nakajava A., Tanaka I. Crystallization and preliminary crystallographic study of the ribosomal protein S7 from Bacillus stearothermophilus. J. Struct. Biol. 120:1997;112-114.
13. Hendrickson W. A., Horton J. R., LeMaster D. M. Selenomethionyl proteins produced for analysis by multiwavelength anomalous diffraction (MAD): A vehicle for direct determination of three-dimensional structure. EMBO J. 9:1990;1665-1672.
14. Hendrickson W. A., Ogata C. M. Phase determination from multiwavelength anomalous diffraction measurements. Methods Enzymol. 276:1996;494-522.
15. Hsiao C.-D., Chou C.-C., Hsiao Y.-Y., Sun Y. J., Meng M. Expression, purification and crystallization of two isozymes of 6-phosphoglucose isomerase from Bacillus stearothermophilus. J. Struct. Biol. 120:1997;196-200.
16. Kuhn N. J., Setlow B., Setlow P. Manganese(II) activation of 3-phosphoglycerate mutase of Bacillus megaterium: pH-sensitive interconversion of active and inactive forms. Arch. Biochem. Biophys. 306:1993;342-349.
17. Kuhn N. J., Setlow B., Setlow P., Cammack R., Williams R. Cooperative manganese(II) activation of 3-phosphoglycerate mutase of Bacillus megaterium: A biological pH-sensing mechanism in bacterial spore formation and germination. Arch. Biochem. Biophys. 319:1995;35-42.
18. Laemmli U. K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 227:1970;680-685.
19. Leadlay P. F., Breathnach R., Gatehouse J. A., Johnson P. E., Knowles J. R. Phosphoglycerate mutase from wheat germ: Studies with isotopically labeled 3-phospho-d-glycerates showing that the catalyzed reaction is intramolecular. Biochemistry. 16:1977;3050-3053.
20. LeGrice S. F. J. Regulated promoter for high-level expression of heterologous genes in Bacillus subtilis. Goeddel D. V. Gene Expression Technology. 1990;201-214 Academic Press.
21. Leyva-Vazquez M.-A., Setlow P. Cloning and nucleotide sequence of the genes encoding triosephosphate isomerase, phosphoglycerate mutase and enolase from Bacillus subtilis. J. Bacteriol. 176:1994;3903-3910.
22. Liang X., Bai J., Liu Y., Lubman D. M. Characterization of SDS-PAGE-separated proteins by matrix-assisted laser desorption/ionization mass spectroscopy. Anal. Chem. 68:1996;1012-1018.
23. Magill N. G., Cowan A. E., Leyva-Vazquez M.-A., Brown M., Koppel D. E., Setlow P. Analysis of the relationship between the decrease in pH and accumulation of 3-phosphoglyceric acid in developing forespore of Bacillus species. J. Bacteriol. 178:1996;2204-2210.
24. Matthews B. W. Solvent content of protein crystals. J. Mol. Biol. 33:1968;491-497.
25. McPherson A. Preparation and Analysis of Protein Crystals. 1982;Wiley.
26. Muccio D. E., Waterhous D. V., Fish F., Brouillette C. G. Analysis of the two-state behavior of the thermal unfolding of serum retinol binding protein containing a single retinol ligand. Biochemistry. 31:1992;5560-5567.
27. Otwinowski Z., Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276:1996;307-326.
28. Pace C. N., Vajdos F., Fee L., Grimsley G., Gray T. How to measure and predict the molar absorption coefficient of a protein. Protein Sci. 4:1995;2411-2423.
29. Rentier-Delrue F., Moyens S., Lion M., Martial J. A. Sequence of the triosephosphate isomerase-encoding gene isolated from the thermophile Bacillus stearothermophilus. Gene. 134:1993;137-138.
30. Ridgen D. J., Alexeev D., Phillips S. E. V., Fothergill-Gilmore L. A. The 2.3 Å X-ray crystal structure of S. cerevisiae phosphoglycerate mutase. J. Mol. Biol. 276:1998;449-459.
31. Rose Z. B. The enzymology of 2,3-bisphosphoglycerate. Adv. Enzymol. Relat. Areas Mol. Biol. 51:1980;211-253.
32. Saito H., Shibata T., Ando T. Mapping of genes determining nonpermissiveness and host-specific restriction to bacteriophages in Bacillus subtilis Marburg. Mol. Gen. Genet. 170:1979;117-122.
33. Sambrook J., Fritsch E. T., Maniatis T. Molecular Cloning: A Laboratory Manual. 1989;Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
34. Schläpfer B. S., Zuber H. Cloning and sequencing of the genes encoding glyceraldehyde-3-phosphate dehydrogenase, phosphoglycerate kinase and triosephosphate isomerase (gap operon) from mesophilic Bacillus megaterium: Comparison with corresponding sequences from thermophilic Bacillus stearothermophilus. Gene. 122:1992;53-62.
35. 6-tagging vectors allowing single-step purification of GroES and other polypeptides produced in Bacillus subtilis. Gene. 147:1994;91-94.
36. Setlow P., Kornberg A. Biochemical studies of bacterial sporulation and germination. XXIII. Energy metabolism in early stages of germination of Bacillus megaterium spores. J. Biol. Chem. 245:1970;3637-3644.
37. Singh R. P., Setlow P. Purification and properties of phosphoglycerate phosphomutase from spores and cells of Bacillus megaterium. J. Bacteriol. 137:1979;1024-1027.
38. + and other monovalent cations in dormant and germinated spores of Bacillus megaterium. J. Bacteriol. 148:1981;20-29.
39. Szebenyi D. M. E., Arvai A., Ealick S., LaIuppa J. M., Nielsen C. A system for integrated collection and analysis of crystallographic diffraction data. J. Synchrotron Rad. 4:1997;128-135.
40. Uhrinova S., Uhrin D., Narin J., Price N. C., Fothergill-Gilmore L. A., Barlow P. N. Backbone assignment of double labeled 23.7 kDa phosphoglycerate mutase from Schizosaccharomyces pombe. J. Biomol. NMR. 10:1997;309-310.
41. Watabe K., Freese E. Purification and properties of the manganese-dependent phosphoglycerate mutase of Bacillus subtilis. J. Bacteriol. 137:1979;773-778.