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Volumn 13, Issue 6, 1997, Pages 601-608

Xdom, a graphical tool to analyse domain arrangements in any set of protein sequences

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN;

EID: 0031446550     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/13.6.601     Document Type: Article
Times cited : (28)

References (29)
  • 2
    • 0030861438 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence data bank and its supplement TrEMBL
    • Bairoch.A and Apweiler.A. (1997) The SWISS-PROT protein sequence data bank and its supplement TrEMBL. Nucleic Acids Res, 25. 31-36
    • (1997) Nucleic Acids Res , vol.25 , pp. 31-36
    • Bairoch, A.1    Apweiler, A.2
  • 3
    • 0030771126 scopus 로고    scopus 로고
    • The PROS1TE database, its status in 1997
    • Bairoch.A.. Bucher.P. and Homiann.K. (1996) The PROS1TE database, its status in 1997. Nucleic Acids Res.. 25. 217-221.
    • (1996) Nucleic Acids Res , vol.25 , pp. 217-221
    • Bairoch, A.1    Bucher, P.2    Homiann, K.3
  • 4
    • 0025900486 scopus 로고
    • Shuffled domains in extracellular proteins
    • Bork.P. (1991) Shuffled domains in extracellular proteins. FEBSLell.. 286. 47-54.
    • (1991) Febslell , vol.286 , pp. 47-54
    • Bork, P.1
  • 5
    • 16044367245 scopus 로고    scopus 로고
    • Complete genome sequence of the methano-genic urchaeon, Methanocot cus jannasihii
    • Bult C.J. et al. (1996) Complete genome sequence of the methano-genic urchaeon, Methanocot cus jannasihii. Snence. 273. 1058-1073.
    • (1996) Snence , vol.273 , pp. 1058-1073
    • Bult, C.J.1
  • 7
    • 85071201164 scopus 로고
    • In Venter.J.C. (ed.). Automated DNA Sequencing and Analysis Techniques. Academic Press. Chapter 36
    • Clavene J.M. (1993) Large scale sequence analysis. In Venter.J.C. (ed.). Automated DNA Sequencing and Analysis Techniques. Academic Press. Chapter 36.
    • (1993) Large Scale Sequence Analysis
    • Clavene, J.M.1
  • 8
    • 0001282761 scopus 로고
    • Information enhancement methods for large scale sequence analysis
    • Clavcrie.J.M. and States, D.J. (1993) Information enhancement methods for large scale sequence analysis. Comput. Chein., 17, 191-201.
    • (1993) Comput. Chein. , vol.17 , pp. 191-201
    • Clavcrie, J.M.1    States, D.J.2
  • 9
    • 0024297354 scopus 로고
    • Multiple sequence alignment with hierarchical clustering
    • Corpet.F. (1988) Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res.. 16. 10881-10890.
    • (1988) Nucleic Acids Res , vol.16 , pp. 10881-10890
    • Corpet, F.1
  • 10
    • 0029006062 scopus 로고
    • The multiplicity of domains in proteins
    • Doolittle.R.F. (1995) The multiplicity of domains in proteins. Annu. Rev. Bwchem., 64. 287-314.
    • (1995) Annu. Rev. Bwchem. , vol.64 , pp. 287-314
    • Doolittle, R.F.1
  • 11
    • 0029653518 scopus 로고
    • Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
    • Fleischmann.R.D. et al (1995) Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science. 269. 496-512.
    • (1995) Science , vol.269 , pp. 496-512
    • Fleischmann, R.D.1
  • 12
    • 0028829125 scopus 로고
    • The minimal gene complement of Mvcoplasma gemtalium
    • Fraser.C.M. etal (1995) The minimal gene complement of Mvcoplasma gemtalium. Science, 270, 397-403.
    • (1995) Science , vol.270 , pp. 397-403
    • Fraser, C.M.1
  • 13
    • 0028221642 scopus 로고
    • Volume changes in protein evolution
    • Gerstein, M., Sonnhammer, E.L. and Chothia.C. (1994) Volume changes in protein evolution../. Mol. Biol., 236. 1067-1078.
    • (1994) Mol. Biol. , vol.236 , pp. 1067-1078
    • Gerstein, M.1    Sonnhammer, E.L.2    Chothia, C.3
  • 14
  • 15
    • 0030460276 scopus 로고    scopus 로고
    • Graphical interface for ProDom domain families
    • Gouzy.J.. Corpet.F. and Kahn, D. (1996) Graphical interface for ProDom domain families. Trends Biochem. Sci., 21. 493.
    • (1996) Trends Biochem. Sci. , vol.21 , pp. 493
    • Gouzy, J.1    Corpet, F.2    Kahn, D.3
  • 16
    • 0026458378 scopus 로고
    • Amino acid substitution matrices from protein blocks
    • Henikoff.S. and Henikoff.J.G. (1992) Amino acid substitution matrices from protein blocks Proc. Natl Acad. Sci. USA, 89. 10915-10919.
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , pp. 10915-10919
    • Henikoff, S.1    Henikoff, J.G.2
  • 17
    • 0025371704 scopus 로고
    • Finding protein similarities with nucleotide sequence databases
    • Henikoff.S., Wallace.J.C. and Brown.J.P. (1990) Finding protein similarities with nucleotide sequence databases. Methods Enzymol., 183,111-132.
    • (1990) Methods Enzymol , vol.183 , pp. 111-132
    • Henikoff, S.1    Wallace, J.C.2    Brown, J.P.3
  • 18
    • 0030297503 scopus 로고    scopus 로고
    • Connecting protein family resources using the proWeb network
    • Henikoff.S.. Endow.S.A. and Greene, E.A. (1996) Connecting protein family resources using the proWeb network. Trends Biochem Sci., 21,444-445.
    • (1996) Trends Biochem Sci , vol.21 , pp. 444-445
    • Henikoff, S.1    Endow, S.A.2    Greene, E.A.3
  • 20
    • 0030606607 scopus 로고    scopus 로고
    • Sequence analysis of the genome of the unicellular cyanobacterium Svnechocvstis sp. Strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions
    • Kaneko.T. et al. (1996) Sequence analysis of the genome of the unicellular cyanobacterium Svnechocvstis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions. DNA Res., 3, 109-136.
    • (1996) DNA Res , vol.3 , pp. 109-136
    • Kaneko, T.1
  • 21
    • 0025259313 scopus 로고
    • Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
    • Karlin.S. and Altschul.S.F. (1990) Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. Proc. Natl Acad. Sci. USA. 87, 2264-2268.
    • (1990) Proc. Natl Acad. Sci. USA. , vol.87 , pp. 2264-2268
    • Karlin, S.1    Altschul, S.F.2
  • 22
    • 0014757386 scopus 로고
    • A general method applicable to the search for similarities in the amino acid sequence of two proteins
    • Needleman.S.B. and Wunsch.C.D. (1970) A general method applicable to the search for similarities in the amino acid sequence of two proteins../. Mol. Biol., 48, 443-453.
    • (1970) Mol. Biol. , vol.48 , pp. 443-453
    • Needleman, S.B.1    Wunsch, C.D.2
  • 23
    • 0023989064 scopus 로고
    • Improved tools for biological sequence analysis
    • Pearson.W.R. and Lipman.DJ. (1988) Improved tools for biological sequence analysis. Proc. Natl Acad Sci. USA, 85. 2444-2448.
    • (1988) Proc. Natl Acad Sci. USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 24
    • 0028104094 scopus 로고
    • The bacterial phosphotransfera.Se system: New frontiers 30 years later. Mol
    • Saier M.H. and Reizer J. (1994) The bacterial phosphotransfera.se system: new frontiers 30 years later. Mol. Microbiol.. 13. 755-764.
    • (1994) Microbiol. , vol.13 , pp. 755-764
    • Saier, M.H.1    Reizer, J.2
  • 25
    • 0026100921 scopus 로고
    • A workbench for multiple alignment construction and analysis
    • Schuler.G.D., Altschul.S.F. and Lipman.D.J. (1991) A workbench for multiple alignment construction and analysis. Proteins. 9, 180-190.
    • (1991) Proteins , vol.9 , pp. 180-190
    • Schuler, G.D.1    Altschul, S.F.2    Lipman, D.J.3
  • 26
    • 0028218683 scopus 로고
    • Modular arrangement of proteins as inferred from analysis of homology
    • Sonnhammer.E.L.L. and Kahn.D. (1994) Modular arrangement of proteins as inferred from analysis of homology. Protein Sci., 3. 482-92.
    • (1994) Protein Sci , vol.3 , pp. 482-492
    • Sonnhammer, E.L.L.1    Kahn, D.2
  • 27
    • 0028091659 scopus 로고
    • Detection of conserved segments in proteins: Iterative scanning of sequence databases with alignment blocks
    • Tatusov.R.L., Altschul.S.F. and Koonin.E.V. (1994) Detection of conserved segments in proteins: iterative scanning of sequence databases with alignment blocks. Proc. Natl Acad. Sci. USA. 91. 12091-12095.
    • (1994) Proc. Natl Acad. Sci. USA. , vol.91 , pp. 12091-12095
    • Tatusov, R.L.1    Altschul, S.F.2    Koonin, E.V.3
  • 28
    • 0001514262 scopus 로고
    • Statistics of local complexity in amino acid sequences and sequence databases
    • Wootton.J.C. and Federhen.S. (1993) Statistics of local complexity in amino acid sequences and sequence databases. Comput. Chem., 17, 149-163.
    • (1993) Comput. Chem. , vol.17 , pp. 149-163
    • Wootton, J.C.1    Federhen, S.2
  • 29
    • 0029901640 scopus 로고    scopus 로고
    • Analysis of compositionally biased regions in sequence databases
    • Wootton.J.C. and Federhen.S. (1996) Analysis of compositionally biased regions in sequence databases. Methods Enzymol., 266. 554-571.
    • (1996) Methods Enzymol , vol.266 , pp. 554-571
    • Wootton, J.C.1    Federhen, S.2


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