Roles of conserved residues in the arginase family

Biochimica et Biophysica Acta - Protein Structure and Molecular Enzymology

Volumn 1382, Issue 1, 1998, Pages 23-37

  Perozich, John ^a   Hempel, John ^b   Morris Jr , Sidney M ^a  

^a UNIVERSITY OF PITTSBURGH SCHOOL OF MEDICINE   (United States)

^b UNIVERSITY OF PITTSBURGH   (United States)

Author keywords

Agmatine ureohydrolase; Arginase; Creatinase; Enzyme family; Formiminoglutamate hydrolase; Multiple sequence alignment

Indexed keywords

AMINO ACID; ARGINASE; ARGININE; ASPARTIC ACID; GLYCINE; HISTIDINE; HYDROLASE; PROLINE;

AMINO ACID SEQUENCE; ARTICLE; CAENORHABDITIS ELEGANS; CATALYSIS; CRYSTAL STRUCTURE; GENE DUPLICATION; METAL BINDING; METHANOBACTERIUM; NONHUMAN; PRIORITY JOURNAL; PROTEIN FAMILY;

AMINO ACID SEQUENCE; ANIMALS; ARGINASE; CONSERVED SEQUENCE; EVOLUTION, MOLECULAR; HUMANS; HYDROGEN BONDING; LIVER; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; PHYLOGENY; RATS; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; SUBSTRATE SPECIFICITY;

ARABIDOPSIS THALIANA; CAENORHABDITIS ELEGANS; METHANOBACTERIUM; METHANOCALDOCOCCUS JANNASCHII; METHANOCOCCUS; METHANOTHERMUS FERVIDUS; SYNECHOCYSTIS; VERTEBRATA;

EID: 0031952562     PISSN: 01674838     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0167-4838(97)00131-3     Document Type: Article

References (60)

1. Abdelal A.T. Annu. Rev. Microbiol. 33:1979;139-168.
2. Ouzounis C.A., Kyrpides N.C. J. Mol. Evol. 39:1994;101-104.
3. Jenkinson C.P., Grody W.W., Cederbaum S.D. Comp. Biochem. Physiol. 114B:1996;107-132.
4. Morris S.M., Bhamidipati D., Kepka-Lenhart D. Gene. 193:1997;157-161.
5. Gotoh T., Sonoki T., Nagasaki A., Terada K., Takiguchi M., Mori M. FEBS Lett. 395:1996;119-122.
6. Vockley J.G., Jenkinson C.P., Shukla H., Kern R.M., Grody W.W., Cederbaum S.D. Genomics. 38:1996;118-123.
7. Oka T., Perry J.W. Nature. 250:1974;660-661.
8. Levillain O., Hus-Citharel A., Morel F., Bankir L. Am. J. Physiol. 263:1992;F878-F885.
9. Kanyo Z.F., Scolnick L.R., Ash D.E., Christianson D.W. Nature. 383:1996;554-557.
10. Szumanski M.B.W., Boyle S.M. J. Bacteriol. 172:1990;538-547.
11. Aidoo K.A., Wong A., Alexander D.C., Rittammer R.A.R., Jensen S.E. Gene. 147:1994;41-46.
12. Wu T.-K., Busby R.W., Houston T.A., McIlwaine D.B., Egan L.A., Townsend C.A. J. Bacteriol. 177:1995;3714-3720.
13. Yoshida K.-I., Sano H., Seki S., Oda M., Fujimura M., Fujita Y. Microbiology. 141:1995;337-343.
14. Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. J. Mol. Biol. 215:1990;403-410.
15. Thompson J.D., Higgins D.G., Gibson T.J. Nucleic Acids Res. 22:1994;4673-4680.
16. Notredame C., Higgins D.G. Nucleic Acids Res. 24:1996;1515-1524.
17. Kawamoto S., Amaya Y., Murakami K., Tokunga F., Iwanaga S., Kobayashi K., Saheki T., Kimura S., Mori M. J. Biol. Chem. 262:1987;6280-6283.
18. H. Chieko, Direct submission to GenBank (accession U51805), 1996.
19. Takiguchi M., Haraguchi Y., Mori M. Nucleic Acids Res. 16:1988;8789-8802.
20. Iwase K., Yamaguchi K., Ishikawa K. Biochim. Biophys. Acta. 1260:1995;139-146.
21. Xu Q., Baker B.S., Tata J.R. Eur. J. Biochem. 211:1993;891-898.
22. R.K. Iyer, W.W. Grody, Direct submissions to GenBank database (accessions U90886 and U90887), 1997.
23. Patterson D., Shi Y.-B. J. Biol. Chem. 269:1994;25328-25334.
24. P. Borsuk, A. Grzelak, P. Weglenski, Direct submission to GenBank database (accession U62482), 1996.
25. S.V. Marathe, E. Becker, Y.G. Yu, R.L. Weiss, Direct submission to SwissProt database (accession argi_neucr), 1993.
26. Pan S., Zhang M., Cole G.T. Gene. 154:1995;115-118.
27. van Huffel C., Dubois E., Messenguy F. Yeast. 10:1994;923-933.
28. M. Ocampos, Direct submission to SwissProt database (accession arg2_schpo), 1995.
29. Sumrada R.A., Cooper T.G. J. Bacteriol. 160:1984;1078-1087.
30. Gardan R., Rapoport G., Debarbouille M. J. Mol. Biol. 249:1995;843-856.
31. Bewley M.C., Lott J.S., Baker E.N., Patchett M.L. FEBS Lett. 386:1996;215-218.
32. Schrell A., Alt-Moerbe J., Lanz T., Schroeder J. Eur. J. Biochem. 184:1989;635-641.
33. J.E. Mayfield, J. Kim, Direct submission to GenBank database (accession U57319), 1996.
34. Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S. DNA Res. 3:1996;109-136.
35. Krumpelman P.M., Freyermuth S.K., Cannon J.F., Fink G.R., Polacco J.C. Plant Physiol. 107:1995;1479-1480.
36. R. Connor, C.M. Churcher, B.G. Barrell, M.A. Rajandream, S.V. Walsh, Direct submission to SwissProt database (accession speb_schpo), 1995.
37. P. Glaser, A. Sekowska, A. Danchin, Direct submission to GenBank database (accession Z80360), 1996.
38. Schwacha A., Bender R.A. J. Bacteriol. 172:1990;5477-5481.
39. Sandman K., Krzycki J.A., Dobrinski B., Lurz R., Reeve J.N. Proc. Natl. Acad. Sci. U.S.A. 87:1990;5788-5791.
40. R. Wilson, R. Ainscough, K. Anderson, C. Baynes, M. Berks, J. Bonfield, J. Burton, M. Connell, T. Copsey, J. Cooper, A. Coulson, M. Craxton, S. Dear, Z. Du, R. Durbin, A. Favello, L. Johnson, M. Jones, J. Kershaw, J. Kirsten, N. Laister, P. Latreille, J. Lightning, C. Lloyd, A. McMurray, B. Mortimore, M. O'Callaghan, J. Parsons, C. Percy, L. Rifken, A. Roopra, D. Saunders, R. Shownkeen, N. Smaldon, A. Smith, E. Sonhammer, R. Staden, J. Sulston, J. Thierry-Mieg, K. Thomas, M. Vaudin, J. Wilkinson-Sproat, P. Wohldman, Nature 368 (1994) 32-38.
41. C.J. Bult, O. White, G.J. Olsen, L. Zhou, R.D. Fleischmann, G.G. Sutton, J.A. Blake, L.M. Fitzgerald, R.A. Clayton, J.D. Gocayne, A.R. Kerlavage, B.A. Dougherty, J.-F. Tomb, M.D. Adams, C.I. Reich, R. Overbeek, E.F. Kirkness, K.G. Weinstock, J.M. Merrick, A. Glodek, J.L. Scott, N.S.M. Geoghagen, J.F. Weidman, J.L. Fuhrmann, E.A. Presley, D. Nguyen, T.R. Utterback, J.M. Kelley, J.D. Peterson, P.W. Sadow, M.C. Hanna, M.D. Cotton, M.A. Hurst, K.M. Roberts, B.P. Kaine, M. Borodovsky, H.-P. Klenk, C.M. Fraser, H.O. Smith, C.R. Woese, J.C. Venter, Science 273 (1996) 1058-1073.
42. Dayhoff M.O., Barker W.C., Hunt L.T. Methods Enzymol. 91:1983;524-545.
43. Fitch W.M., Margoliash E. Science. 155:1967;279-284.
44. J. Felsenstein, PHYLIP Manual, Version 3.3. University Herbarium, University of California, Berkeley, 1990.
45. Mehta P.K., Heringa J., Argos P. Protein Sci. 4:1995;2517-2525.
46. Gribskov M., Lüthy R., Eisenberg D. Methods Enzymol. 183:1990;146-159.
47. Suzuki K., Sagai H., Sugiyama M., Imamura S. J. Ferment. Bioeng. 76:1993;77-81.
48. Hoeffken H.W., Knof S.H., Bartlett P.A., Huber R., Moellering H., Schumacher G. J. Mol. Biol. 204:1988;417-433.
49. Coll M., Knof S.H., Ohga Y., Messerschmidt A., Huber R., Moellering H., Rüssmann L., Schumacher G. J. Mol. Biol. 214:1990;597-610.
50. Jones T.A., Zou J.-Y., Cowan S.W., Kjeldgaard M. Acta Crystallogr. A47:1991;110-119.
51. Hempel J., Nicholas H., Lindahl R. Prot. Sci. 2:1993;1890-1900.
52. Jörnvall H. Eur. J. Biochem. 72:1977;443-452.
53. Cavalli R.C., Burke C.J., Kawamoto S., Soprano D.R., Ash D.E. Biochemistry. 33:1994;10652-10657.
54. Vockley J.G., Goodman B.K., Tabor D.E., Kern R.M., Jenkinson C.P., Grody W.W., Cederbaum S.D. Biochem. Mol. Med. 59:1996;44-51.
55. Christianson D.W., Alexander R.S. J. Am. Chem. Soc. 111:1989;6412-6419.
56. Christianson D.W., Fierke C.A. Acc. Chem. Res. 29:1996;331-339.
57. S.W. Brusilow, A.L. Horwich, in: C.R. Scriver, A.L. Beaudet, W.S. Sly, D. Valle (Eds.), The Metabolic and Molecular Bases of Inherited Disease, 7th ed., McGraw-Hill, New York, 1995, pp. 1187-1232.
58. Uchino T., Haraguchi Y., Aparicio J.M., Mizutani N., Higashikawa M., Naitoh H., Mori M., Matsuda I. Am. J. Hum. Genet. 51:1992;1406-1412.
59. Vockley J.G., Tabor D.E., Kern R.M., Goodman B.K., Wissmann P.B., Soosang-Kang D., Grody W.W., Cederbaum S.D. Hum. Mutat. 4:1994;150-154.
60. Danielsson O., Atrian S., Luque T., Hjelmqvist L., González-Duarte R., Jörnvall H. Proc. Natl. Acad. Sci. U.S.A. 91:1994;4980-4984.