Cleavage of a 23S rRNA pseudoknot by phenanthroline-Cu(II)

Nucleic Acids Research

Volumn 27, Issue 8, 1999, Pages 1906-1911

  Muth, Gregory W ^a   Thompson, Charles M ^a   Hill, Walter E ^a  

^a UNIVERSITY OF MONTANA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COPPER; NUCLEOTIDE; PHENANTHROLINE; RIBOSOME PROTEIN; RIBOSOME RNA;

ARTICLE; COMPLEX FORMATION; ESCHERICHIA COLI; HEATING; PRIORITY JOURNAL; RIBOSOME; RIBOSOME SUBUNIT; RNA CLEAVAGE; RNA STRUCTURE;

BINDING SITES; COPPER; INTERCALATING AGENTS; MOLECULAR STRUCTURE; NUCLEIC ACID CONFORMATION; NUCLEIC ACID DENATURATION; PHENANTHROLINES; RIBOSOMES; RNA, RIBOSOMAL, 23S;

ESCHERICHIA COLI;

EID: 0033560960     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/27.8.1906     Document Type: Article

References (43)

1. Noller, H.F. and Herr, W. (1974) J. Mol. Biol., 90, 181-184.
2. Stern, S., Powers, T., Changchien, L.-M. and Noller, H.F. (1989) Science, 244, 783-790.
3. Noller, H.F., Moazed, D., Stern, S., Powers, T., Allen, P.N., Robertson, J.M., Weiser, B. and Triman, K. (1990) In Hill, W.E., Dahlberg, A.E., Garrett, R.A., Moore, P.B., Schlessinger, D. and Warner, J.R. (eds), The Ribosome: Structure, Function and Evolution, Vol. 1. American Society for Microbiology, Washington, DC, pp. 73-92.
4. Teare, J. and Wollenzien, P. (1989) Nucleic Acids Res., 17, 3359-3372.
5. Hill, W.E., Weller, J.W., Gluick, T., Merryman, C., Marconi, R. and Tapprich, W.E. (1990) In Hill, W.E., Dahlberg, A.E., Garrett, R.A., Moore, P.B., Schlessinger, D. and Warner, J.R. (eds), The Ribosome: Structure, Function and Evolution, Vol. 1. American Society for Microbiology, Washington, DC, pp. 253-261.
6. Stiege, W., Zwieb, C. and Brimacombe, R. (1982) Nucleic Acids Res., 10, 7211-7299.
7. Brimacombe, R., Stiege, W., Kyriatsoulis, A. and Maly, P. (1988) Methods Enzymol., 164, 287-309.
8. Stiege, W., Atmadja, J., Zobawa, M. and Brimacombe, R. (1986) J. Mol. Biol., 191, 135-138.
9. Lim, V., Venclovas, C., Spirin, A., Brimacombe, R., Mitchell, P. and Müller, F. (1992) Nucleic Acids Res., 20, 2627-2637.
10. Bogdanov, A.A., Dontsova, O.A. and Brimacombe, R. (1993) In Nierhaus, K.H., Franceschi, F., Subramanian, A.R., Erdmann, V.A. and Wittmann-Liebold, B. (eds), The Translational Apparatus: Structure, Function, Regulation, Evolution, Vol. 1. Plenum Press, New York, pp. 421-432.
11. Bhangu, R., Jusamiene, D. and Wollenzien, P. (1994) Biochemistry, 33, 3063-3070.
12. Huttenhofer, A. and Noller, H.F. (1994) EMBO J., 13, 3892-3901.
13. Bucklin, D.J., van Waes, M.A., Bullard, J.M. and Hill, W.E. (1997) Biochemistry, 36, 7951-7957.
14. Moazed, D. and Noller, H.F. (1990) J. Mol. Biol., 211, 135-145.
15. Odom, O.W., Picking, W.D. and Hardesty, B. (1990) Biochemistry, 29, 10734-10744.
16. Dontsova, O., Dokudovskaya, S., Kopylov, A., Bogdanov, A., Rinke-Appel, J., Jünke, N. and Brimacombe, R. (1992) EMBO J., 11, 3105-3116.
17. Moazed, D. and Noller, H.F. (1989) Cell, 57, 585-597.
18. Stade, K., Junke, N. and Brimacombe, R. (1995) Nucleic Acids Res., 23, 2371-2380.
19. Picking, W.D., Odom, O.W., Tsalkova, T., Serdyuk, I. and Hardesty, B. (1991) J. Biol. Chem., 266, 1534-1542.
20. Moazed, D. and Noller, H.F. (1987) Nature, 327, 389-394.
21. De Stasio, E.A., Moazed, D., Noller, H.F. and Dahlberg, A.E. (1989) EMBO J., 8, 1213-1216.
22. Chen, C.-H.B. and Sigman, D.S. (1988) J. Am. Chem. Soc., 110, 6570-6572.
23. Sigman, D.S. and Chen, C.B. (1990) Annu. Rev. Biochem., 59, 207-236.
24. Sigman, D.S., Mazumder, A. and Perrin, D.M. (1993) Chem. Rev., 93, 2296-2316.
25. Bullard, J.M., van Waes, M.A., Bucklin, D.J. and Hill, W.E. (1995) J. Mol. Biol., 252, 572-582.
26. Hill, W.E., Bucklin, D.J., Bullard, J.M., Galbraith, A.L., Jammi, N.V., Renberg, C.C., Sawyer, B.S. and van Waes, M.A. (1995) Biochem. Cell Biol., 73, 1033-1039.
27. Bullard, J.M., van Waes, M.A., Bucklin, D.J., Rice, M.J. and Hill, W.E. (1998) Biochemistry, 37, 1350-1356.
28. Leffers, H., Kjems, J., Oestergaard, L., Larsen, N. and Garrett, R.A. (1987) J. Mol. Biol., 195, 43-61.
29. Gutell, R.R. and Woese, C.R. (1990) Proc. Natl Acad. Sci. USA, 87, 663-667.
30. Tam, M.F., Dodd, J.A. and Hill, W.E. (1981) J. Biol. Chem., 256, 6430-6434.
31. Lodmell, J.S., Tapprich, W.E. and Hill, W.E. (1993) Biochemistry, 32, 4067-4072.
32. Sigman, D.S., Kuwabara, M.D., Chen, C.-H.B. and Bruice, T.C. (1991) Methods Enzymol., 208, 414-433.
33. Moazed, M., Stern, S. and Noller, H.F. (1986) J. Mol. Biol., 187, 399-416.
34. Sigman, D.S., Landgraf, R., Perrin, D.M. and Pearson, L. (1996) In Sigel, A. and Sigel, H. (eds), Metal Ions in Biological Systems. Marcel Dekker, Inc., New York, pp. 485-513.
35. Hermann, T. and Heumann, H. (1995) RNA, 1, 1009-1017.
36. Meijler, M.M., Zelenko, O. and Sigman, D.S. (1997) J. Am. Chem. Soc., 119, 1135-1136.
37. Chen, T. and Greenberg, M.M. (1998) J. Am. Chem. Soc., 120, 3815-3816.
38. Pogozelski, W.K. and Tullius, T.D. (1998) Chem. Rev., 98, 1089-1107.
39. Osswald, M., Greuer, B. and Brimacombe, R. (1990) Nucleic Acids Res., 18, 6755-6750.
40. Elela, S.A., Good, L., Melekhovets, Y.F. and Nazar, R.N. (1994) Nucleic Acids Res., 22, 686-693.
41. Elela, S.A. and Nazar, R.N. (1997) Nucleic Acids Res., 25, 1788-1794.
42. Gualerzi, C.O. and Pon, C.L. (1996) In Zimmermann, R.A. and Dahlberg, A.E. (eds), Ribosomal RNA: Structure, Evolution, Processing and Function in Protein Biosynthesis, Vol. 1. CRC Press, Boca Raton, FL, pp. 259-276.
43. Arkov, A.L., Mankin, A. and Murgola, E.J. (1998) J. Bacteriol., 180, 2744-2748.