메뉴 건너뛰기




Volumn 7, Issue 1, 1999, Pages 1-11

Solution conformation of a parallel DNA triple helix with 5' and 3' triplex-duplex junctions

Author keywords

DNA triplex; Groove widths; Junctions

Indexed keywords

CYTOSINE; DNA; PURINE DERIVATIVE; PYRIMIDINE DERIVATIVE;

EID: 0033555950     PISSN: 09692126     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0969-2126(99)80004-5     Document Type: Article
Times cited : (44)

References (43)
  • 1
    • 0027197574 scopus 로고
    • Oligonucleotide-directed triple-helix formation
    • Sun, J.-S. & Hélène, C. (1993). Oligonucleotide-directed triple-helix formation. Curr. Opin. Struct. Biol. 3, 345-356.
    • (1993) Curr. Opin. Struct. Biol. , vol.3 , pp. 345-356
    • Sun, J.-S.1    Hélène, C.2
  • 2
    • 0025719002 scopus 로고
    • A triplex DNA-binding protein from human cells: Purification and characterization
    • Kiyama, R. & Camerini-Otero, R.D. (1991). A triplex DNA-binding protein from human cells: Purification and characterization. Proc. Natl Acad. Sci. USA 88, 10450-10454.
    • (1991) Proc. Natl Acad. Sci. USA , vol.88 , pp. 10450-10454
    • Kiyama, R.1    Camerini-Otero, R.D.2
  • 3
    • 0031588928 scopus 로고    scopus 로고
    • Identification of a triplex DNA-binding protein from human cells
    • Guieysse, A.L., Praseuth, D. & Hélène, C. (1997). Identification of a triplex DNA-binding protein from human cells. J. Mol. Biol. 267, 289-298.
    • (1997) J. Mol. Biol. , vol.267 , pp. 289-298
    • Guieysse, A.L.1    Praseuth, D.2    Hélène, C.3
  • 4
    • 0032544597 scopus 로고    scopus 로고
    • The GAGA factor of drosophila binds triple-stranded DNA
    • Jiménez-Garcia, E., et al., & Azorin, F. (1998). The GAGA factor of drosophila binds triple-stranded DNA. J. Biol. Chem. 273, 24640-24648.
    • (1998) J. Biol. Chem. , vol.273 , pp. 24640-24648
    • Jiménez-Garcia, E.1    Azorin, F.2
  • 5
    • 0029610659 scopus 로고
    • A nucleic acid triple helix formed by a peptide nucleic acid-DNA complex
    • Betts, L., Josey, J.A., Veal, J.M. & Jordan, S.R. (1995). A nucleic acid triple helix formed by a peptide nucleic acid-DNA complex. Science 270, 1835-1841.
    • (1995) Science , vol.270 , pp. 1835-1841
    • Betts, L.1    Josey, J.A.2    Veal, J.M.3    Jordan, S.R.4
  • 6
    • 0027918138 scopus 로고
    • Solution structure of a purine-purine-pyrimidine DNA triplex containing G-GC and T-AT triples
    • Radhakrishnan, I. & Patel, D.J. (1993). Solution structure of a purine-purine-pyrimidine DNA triplex containing G-GC and T-AT triples. Structure 1, 135-152.
    • (1993) Structure , vol.1 , pp. 135-152
    • Radhakrishnan, I.1    Patel, D.J.2
  • 7
    • 0028177693 scopus 로고
    • Solution structure of a pyrimidine-purine-pyrimidine DNA triplex containing TA-T, C†-GC and G-TA triples
    • Radhakrishnan, I. & Patel, D.J. (1994). Solution structure of a pyrimidine-purine-pyrimidine DNA triplex containing TA-T, C†-GC and G-TA triples. Structure 2, 17-32.
    • (1994) Structure , vol.2 , pp. 17-32
    • Radhakrishnan, I.1    Patel, D.J.2
  • 8
    • 0030584683 scopus 로고    scopus 로고
    • Solution structure of an antiparallel purine motif triplex containing a T-CG pyrimidine base triplex
    • Ji, J., Hogan, M.E. & Gao, X. (1996). Solution structure of an antiparallel purine motif triplex containing a T-CG pyrimidine base triplex. Structure 4, 425-435.
    • (1996) Structure , vol.4 , pp. 425-435
    • Ji, J.1    Hogan, M.E.2    Gao, X.3
  • 10
    • 0030670937 scopus 로고    scopus 로고
    • Solution conformation of an intramolecular DNA triplex containing non-nucleotide linkers: Comparison with the DNA duplex
    • Bartley, J.P., Brown, T. & Lane, A.N. (1997). Solution conformation of an intramolecular DNA triplex containing non-nucleotide linkers: Comparison with the DNA duplex. Biochemistry 36, 14502-14511.
    • (1997) Biochemistry , vol.36 , pp. 14502-14511
    • Bartley, J.P.1    Brown, T.2    Lane, A.N.3
  • 12
    • 0028609271 scopus 로고
    • Effect of triplex-binding on parallel and antiparallel triple helices using short unmodified and acridine-linked oligonucleotides
    • Cassidy, S.A., Strekowski, L., Wilson, W.D. & Fox, K.R. (1994). Effect of triplex-binding on parallel and antiparallel triple helices using short unmodified and acridine-linked oligonucleotides. Biochemistry 33, 15338-15347.
    • (1994) Biochemistry , vol.33 , pp. 15338-15347
    • Cassidy, S.A.1    Strekowski, L.2    Wilson, W.D.3    Fox, K.R.4
  • 13
    • 0025900145 scopus 로고
    • Site-specific intercalation at the triplex-duplex junction induces a conformational change which is detected by hypersensitivity to diethylpyrocarbonate
    • Collier, D.A., Mergny, J-L., Thuong, N.T. & Hélène, C. (1991). Site-specific intercalation at the triplex-duplex junction induces a conformational change which is detected by hypersensitivity to diethylpyrocarbonate. Nucleic Acids Res. 19, 4219-4224.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 4219-4224
    • Collier, D.A.1    Mergny, J.-L.2    Thuong, N.T.3    Hélène, C.4
  • 14
    • 0026677170 scopus 로고
    • A computational and experimental study of the bending induced at a double-triple helix junction
    • Chomilier, J., Sun, J-S., Collier, D.A., Garestier, T., Hélène, C. & Lavery, R. (1992). A computational and experimental study of the bending induced at a double-triple helix junction. Biophys. Chem. 45, 143-152.
    • (1992) Biophys. Chem. , vol.45 , pp. 143-152
    • Chomilier, J.1    Sun, J.-S.2    Collier, D.A.3    Garestier, T.4    Hélène, C.5    Lavery, R.6
  • 15
    • 0001605673 scopus 로고
    • Sugar conformations in intramolecular triplexes determined by coupling constants obtained by automated simulation of P.COSY cross-peaks
    • Macaya, R.F., Schultze, P. & Feigon, J. (1992). Sugar conformations in intramolecular triplexes determined by coupling constants obtained by automated simulation of P.COSY cross-peaks. J. Am. Chem. Soc. 114, 781-783.
    • (1992) J. Am. Chem. Soc. , vol.114 , pp. 781-783
    • Macaya, R.F.1    Schultze, P.2    Feigon, J.3
  • 16
    • 0030696886 scopus 로고    scopus 로고
    • Bimolecular DNA triplexes: Duplex extensions show implications for H-form DNA stability
    • Mundt, A.A., Cruch, G. J. & Eaton, B.E. (1997). Bimolecular DNA triplexes: Duplex extensions show implications for H-form DNA stability. Biochemistry 36, 13004-13009.
    • (1997) Biochemistry , vol.36 , pp. 13004-13009
    • Mundt, A.A.1    Cruch, G.J.2    Eaton, B.E.3
  • 17
    • 0026621730 scopus 로고
    • Very stable mismatch duplexes. Structural and thermodynamic studies on tandem G.A mismatches in DNA
    • Ebel, S., Lane, A.N. & Brown, T. (1992). Very stable mismatch duplexes. Structural and thermodynamic studies on tandem G.A mismatches in DNA. Biochemistry 31, 12083-12086.
    • (1992) Biochemistry , vol.31 , pp. 12083-12086
    • Ebel, S.1    Lane, A.N.2    Brown, T.3
  • 18
    • 0024290403 scopus 로고
    • Influence of dangling thymidine residues on the stability and structure of two DNA duplexes
    • Senior, M., Jones, R.A. & Breslauer, K.J. (1988). Influence of dangling thymidine residues on the stability and structure of two DNA duplexes. Biochemistry 27, 3879-3885.
    • (1988) Biochemistry , vol.27 , pp. 3879-3885
    • Senior, M.1    Jones, R.A.2    Breslauer, K.J.3
  • 19
  • 22
    • 0026726087 scopus 로고
    • Furanose sugar conformations in DNA from NMR coupling constants
    • van Wijk, J., Huckriede, B.D., Ippel, J.H. & Altona, C. (1992). Furanose sugar conformations in DNA from NMR coupling constants. Methods Enzymol. 211, 286-306.
    • (1992) Methods Enzymol. , vol.211 , pp. 286-306
    • Van Wijk, J.1    Huckriede, B.D.2    Ippel, J.H.3    Altona, C.4
  • 26
    • 0020359857 scopus 로고
    • Reversible bending and helix geometry in a B-DNA dodecamer: CGCGAATTBrCGCG
    • Fratini, A.V., Kopka, M.L, Drew, H.R. & Dickerson, R.E. (1982). Reversible bending and helix geometry in a B-DNA dodecamer: CGCGAATTBrCGCG. J. Biol. Chem. 257, 14686-14707.
    • (1982) J. Biol. Chem. , vol.257 , pp. 14686-14707
    • Fratini, A.V.1    Kopka, M.L.2    Drew, H.R.3    Dickerson, R.E.4
  • 27
    • 0024290411 scopus 로고
    • A solution structure of poly(rA-poly(dT) with different furanose pucker and backbone geometry in rA and dT strand and intrastrand hydrogen bonding of adenine 8CH
    • Benevides, J.M. & Thomas, G.J., Jr. (1988). A solution structure of poly(rA)-poly(dT) with different furanose pucker and backbone geometry in rA and dT strand and intrastrand hydrogen bonding of adenine 8CH. Biochemistry 27, 3868-3873.
    • (1988) Biochemistry , vol.27 , pp. 3868-3873
    • Benevides, J.M.1    Thomas G.J., Jr.2
  • 28
    • 0023164663 scopus 로고
    • Poly(dA-poly(dT) is a B-type double helix with a distinctly narrow minor groove
    • Alexeev, D.G., Lipanov, A.A. & Skuratovskii, I.Ya. (1987). Poly(dA)-poly(dT) is a B-type double helix with a distinctly narrow minor groove. Nature 325, 821-823.
    • (1987) Nature , vol.325 , pp. 821-823
    • Alexeev, D.G.1    Lipanov, A.A.2    Skuratovskii, I.Y.3
  • 29
    • 0028089696 scopus 로고
    • Electrostatic effects in DNA triple helices
    • Völker, J. & Klump, H.H. (1994) Electrostatic effects in DNA triple helices. Biochemistry 33, 13502-13508.
    • (1994) Biochemistry , vol.33 , pp. 13502-13508
    • Völker, J.1    Klump, H.H.2
  • 30
    • 0029923446 scopus 로고    scopus 로고
    • Prediction of the stability of DNA triplexes
    • Roberts, R.W. & Crothers, D.M. (1996). Prediction of the stability of DNA triplexes. Proc. Natl Acad. Sci. USA 93, 44320-44325.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 44320-44325
    • Roberts, R.W.1    Crothers, D.M.2
  • 31
    • 0027989641 scopus 로고
    • DNase I footprinting of triple helix formation at polypurine tracts by acridine-linked oligopyrimidines: Stringency, structural changes and interaction with minor groove binding ligands
    • Stonehouse, T.J. & Fox, K.R. (1994). DNase I footprinting of triple helix formation at polypurine tracts by acridine-linked oligopyrimidines: Stringency, structural changes and interaction with minor groove binding ligands. Biochim. Biophys. Acta 1218, 322-330.
    • (1994) Biochim. Biophys. Acta , vol.1218 , pp. 322-330
    • Stonehouse, T.J.1    Fox, K.R.2
  • 32
    • 0031035170 scopus 로고    scopus 로고
    • The dependence of DNase I activity on the conformation of oligodeoxynucleotides
    • Sutton, D., Conn, G.L., Brown, T. & Lane, A.N. (1997). The dependence of DNase I activity on the conformation of oligodeoxynucleotides. Biochem. J 321, 481-486.
    • (1997) Biochem. J , vol.321 , pp. 481-486
    • Sutton, D.1    Conn, G.L.2    Brown, T.3    Lane, A.N.4
  • 33
    • 0026951903 scopus 로고
    • Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions
    • Piotto, M., Saudek, V. & Sklenar, V. (1992). Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions. J. Biomol. Struct. 2, 661-665.
    • (1992) J. Biomol. Struct. , vol.2 , pp. 661-665
    • Piotto, M.1    Saudek, V.2    Sklenar, V.3
  • 34
    • 2642628181 scopus 로고
    • A two-dimensional nuclear overhauser experiment with pure absorption phase in four quadrants
    • States, D.J., Haberkorn, R.A. & Ruben, D.J. (1982). A two-dimensional nuclear overhauser experiment with pure absorption phase in four quadrants. J. Magn. Reson. 48, 286-292.
    • (1982) J. Magn. Reson. , vol.48 , pp. 286-292
    • States, D.J.1    Haberkorn, R.A.2    Ruben, D.J.3
  • 35
    • 5144233105 scopus 로고
    • MLEV-17 based two-dimensional homonuclear magnetization transfer spectroscopy
    • Bax, A. & Davis, D.G. (1985). MLEV-17 based two-dimensional homonuclear magnetization transfer spectroscopy. J. Magn. Reson. 65, 355-360.
    • (1985) J. Magn. Reson. , vol.65 , pp. 355-360
    • Bax, A.1    Davis, D.G.2
  • 36
    • 0000195671 scopus 로고
    • Natural abundance nitrogen-15 NMR by enhanced heteronuclear spectroscopy
    • Bodenhausen, G. & Ruben, D.J. (1980). Natural abundance nitrogen-15 NMR by enhanced heteronuclear spectroscopy. Chem. Phys. Lett. 69, 185-189.
    • (1980) Chem. Phys. Lett. , vol.69 , pp. 185-189
    • Bodenhausen, G.1    Ruben, D.J.2
  • 37
    • 0026615791 scopus 로고
    • Solution structure of the DNA duplex GCCGTTAACGCG containing the Hpal restriction site
    • Kim, S-G. & Reid, B.R. (1992). Solution structure of the DNA duplex GCCGTTAACGCG containing the Hpal restriction site. Biochemistry 31, 12103-12116.
    • (1992) Biochemistry , vol.31 , pp. 12103-12116
    • Kim, S.-G.1    Reid, B.R.2
  • 39
    • 0028892069 scopus 로고
    • How to generate accurate solution structures of double-helical nucleic acid fragments using nuclear magnetic resonance and restrained molecular dynamics
    • Schmitz, U. & James, T.L. (1995). How to generate accurate solution structures of double-helical nucleic acid fragments using nuclear magnetic resonance and restrained molecular dynamics. Methods Enzymol. 261, 3-44.
    • (1995) Methods Enzymol. , vol.261 , pp. 3-44
    • Schmitz, U.1    James, T.L.2
  • 40
    • 0029450044 scopus 로고
    • Interproton distance bounds from 2D NOE intensities: Effect of experimental noise and peak integration errors
    • Liu, H., Spielmann, H.P., Ulyanov, N.B., Wemmer, D.E. & James, T.L. (1995). Interproton distance bounds from 2D NOE intensities: Effect of experimental noise and peak integration errors. J. Biomol. NMR. 6, 390-402.
    • (1995) J. Biomol. NMR. , vol.6 , pp. 390-402
    • Liu, H.1    Spielmann, H.P.2    Ulyanov, N.B.3    Wemmer, D.E.4    James, T.L.5
  • 42
    • 0347417188 scopus 로고    scopus 로고
    • Conformation of nucleic acids: Problems and solutions
    • (Leontis, N.B. & SantaLucia, J., eds.), The American Chemical Society, Washington DC, USA
    • Lane, A.N. (1998). Conformation of nucleic acids: Problems and solutions. In ACS Symposium Series 682 Molecular Modeling of Nucleic Acids (Leontis, N.B. & SantaLucia, J., eds.), pp. 106-121, The American Chemical Society, Washington DC, USA.
    • (1998) ACS Symposium Series 682 Molecular Modeling of Nucleic Acids , pp. 106-121
    • Lane, A.N.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.