-
1
-
-
33947470407
-
Formation of a three-strand polynucleotide molecule
-
Felsenfeld, G., Davies, D.R., & Rich, A. (1957). Formation of a three-strand polynucleotide molecule. J. Am. Chem. Soc. 79, 2023-2024.
-
(1957)
J. Am. Chem. Soc.
, vol.79
, pp. 2023-2024
-
-
Felsenfeld, G.1
Davies, D.R.2
Rich, A.3
-
2
-
-
0023619361
-
Sequence-specific cleavage of double helical DNA by triple helix formation
-
Moser, H.E. & Dervan, P.B. (1987). Sequence-specific cleavage of double helical DNA by triple helix formation. Science 238, 645-650.
-
(1987)
Science
, vol.238
, pp. 645-650
-
-
Moser, H.E.1
Dervan, P.B.2
-
3
-
-
0023802737
-
Site-specific oligonucleotide binding represses transcription of the human c-myc gene in vitro
-
Cooney, M., Czernuszewicz, G., Postel, E., Flint, S.J. & Hogan, M.E. (1988). Site-specific oligonucleotide binding represses transcription of the human c-myc gene in vitro. Science 245, 456-459.
-
(1988)
Science
, vol.245
, pp. 456-459
-
-
Cooney, M.1
Czernuszewicz, G.2
Postel, E.3
Flint, S.J.4
Hogan, M.E.5
-
4
-
-
0023970941
-
Sequence specific binding and photocrosslinking of a and b oligodeoxynucleotides to the major groove of DNA via triple helix formation
-
Praseuth, D., et a., & Helene, C. (1988). Sequence specific binding and photocrosslinking of a and b oligodeoxynucleotides to the major groove of DNA via triple helix formation. Proc. Natl. Acad. Sci. USA 85, 1349-1353.
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 1349-1353
-
-
Praseuth, D.1
Helene, C.2
-
5
-
-
0023796273
-
The chemistry and biology of unusual DNA structures adopted by oligopurine-oligopyrimidine sequences
-
Wells, R.D., Collier, D.A., Hanvey, J.C., Shimizu, M. & Wohlrab, F. (1988). The chemistry and biology of unusual DNA structures adopted by oligopurine-oligopyrimidine sequences. FASEB J. 2, 2939-2949.
-
(1988)
FASEB J.
, vol.2
, pp. 2939-2949
-
-
Wells, R.D.1
Collier, D.A.2
Hanvey, J.C.3
Shimizu, M.4
Wohlrab, F.5
-
6
-
-
0025604606
-
Thermodynamic characterization of the stability and the melting behavior of a DNA triplex: A spectroscopic and calorimetric study
-
Plum, G.E., Park, Y.W., Singleton, S.F., Dervan, P.B. & Breslauer, K.J. (1990). Thermodynamic characterization of the stability and the melting behavior of a DNA triplex: a spectroscopic and calorimetric study. Proc. Natl. Acad. Sci. USA 87, 9436-9440.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 9436-9440
-
-
Plum, G.E.1
Park, Y.W.2
Singleton, S.F.3
Dervan, P.B.4
Breslauer, K.J.5
-
7
-
-
0028781381
-
DNA triplex: Solution structures, hydration sites, energetics, interactions, and function
-
Radhakrishnan, I. & Patel, D.J. (1995). DNA triplex: solution structures, hydration sites, energetics, interactions, and function. Biochemistry 33, 11405-11416.
-
(1995)
Biochemistry
, vol.33
, pp. 11405-11416
-
-
Radhakrishnan, I.1
Patel, D.J.2
-
8
-
-
0026437888
-
Stabilities of double- and triple-strand helical nucleic acids
-
Cheng, Y.K. & Pettitt, B.M. (1992). Stabilities of double- and triple-strand helical nucleic acids. Prog. Biophys. Mol. Biol. 58, 225-257.
-
(1992)
Prog. Biophys. Mol. Biol.
, vol.58
, pp. 225-257
-
-
Cheng, Y.K.1
Pettitt, B.M.2
-
9
-
-
11944253600
-
Energies of formation of sixteen triple helical complexes which vary at a single position within a pyrimidine motif
-
Best, G.C. & Dervan, P.B. (1 995). Energies of formation of sixteen triple helical complexes which vary at a single position within a pyrimidine motif. J. Am. Chem. Soc. 117, 1 187-1193.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 1187-1193
-
-
Best, G.C.1
Dervan, P.B.2
-
10
-
-
0029036464
-
Thermodynamics of an intramolecular DNA triple helix: A calorimetric and spectroscopic study of the pH and salt dependence of thermally induced structural transitions
-
Plum, G.E. & Breslauer, K.J. (1995). Thermodynamics of an intramolecular DNA triple helix: a calorimetric and spectroscopic study of the pH and salt dependence of thermally induced structural transitions. J. Mol. Biol. 248, 679-695.
-
(1995)
J. Mol. Biol.
, vol.248
, pp. 679-695
-
-
Plum, G.E.1
Breslauer, K.J.2
-
11
-
-
0000487117
-
Energetics of formation of sixteen triple helical complexes which vary at a single position within a purine motif
-
Greenberg, W.A. & Dervan, P.B. (1995). Energetics of formation of sixteen triple helical complexes which vary at a single position within a purine motif. J. Am. Chem. Soc. 117, 5016-5022.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5016-5022
-
-
Greenberg, W.A.1
Dervan, P.B.2
-
12
-
-
11944266948
-
Structural optimization of non-nucleotide loop replacements for duplex and triplex DNAs
-
2. Rumney, S. & Kool, E.G. (1995). Structural optimization of non-nucleotide loop replacements for duplex and triplex DNAs. J. Am. Chem. Soc. 117, 5635-5646.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5635-5646
-
-
Rumney, S.1
Kool, E.G.2
-
13
-
-
0026341112
-
Parallel-stranded DNA under topological stress: Rearrangement of (dA) 15·(dT)15 to a d(A*A*T)n triplex
-
Klysik, J., Rippe, K. & Jovin, T.M. (1991). Parallel-stranded DNA under topological stress: rearrangement of (dA) 15·(dT)15 to a d(A*A*T)n triplex. Nucleic Acids Res. 19, 7145-7154.
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 7145-7154
-
-
Klysik, J.1
Rippe, K.2
Jovin, T.M.3
-
14
-
-
0028229920
-
Formation of base triplets by non-Watson-Crick bonds mediates homologous recognition in RecA recombination filaments
-
Rao, B.J. & Radding, C.M. (1994). Formation of base triplets by non-Watson-Crick bonds mediates homologous recognition in RecA recombination filaments. Proc. Natl. Acad. Sci. USA 91, 6161-6165.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 6161-6165
-
-
Rao, B.J.1
Radding, C.M.2
-
15
-
-
0028310430
-
A parallel DNA triplex as a model for the intermediate in homologous recombination
-
Zhurkin, V.B., Raghunathan, G., Ulyanov, N.B., Camerini-Otero, R.D. & Jernigan, R.L. (1994). A parallel DNA triplex as a model for the intermediate in homologous recombination. J. Mol. Biol. 239, 181-200.
-
(1994)
J. Mol. Biol.
, vol.239
, pp. 181-200
-
-
Zhurkin, V.B.1
Raghunathan, G.2
Ulyanov, N.B.3
Camerini-Otero, R.D.4
Jernigan, R.L.5
-
16
-
-
0028500559
-
2/DNA triplex structure upon binding of PNA to dsDNA by strand replacement
-
2/DNA triplex structure upon binding of PNA to dsDNA by strand replacement. J. Mol. Recogn. 7, 165-170.
-
(1995)
J. Mol. Recogn.
, vol.7
, pp. 165-170
-
-
Nielsen, P.E.1
Egholm, M.2
Buchardt, O.3
-
17
-
-
0007940905
-
Heterocyclic base modifications in nucleic acids and their applications in antisense oligonucleotides
-
(Crooke, ST. & Lebleu, B., eds), CRC Press, Boca Raton, FL
-
Sanghvi, Y.S. (1993). Heterocyclic base modifications in nucleic acids and their applications in antisense oligonucleotides. In Antisense Research and Applications. (Crooke, ST. & Lebleu, B., eds), pp. 273-288, CRC Press, Boca Raton, FL.
-
(1993)
Antisense Research and Applications
, pp. 273-288
-
-
Sanghvi, Y.S.1
-
18
-
-
0027407035
-
Specific recognition of CG base pairs by 2-deoxynebularine within the purine·purine·pyrimidine triple-helix motif
-
Stilz, H.U. & Dervan, P.B. (1993). Specific recognition of CG base pairs by 2-deoxynebularine within the purine·purine·pyrimidine triple-helix motif. Biochemistry 32, 2177-2185.
-
(1993)
Biochemistry
, vol.32
, pp. 2177-2185
-
-
Stilz, H.U.1
Dervan, P.B.2
-
19
-
-
33751391791
-
Triplex formation of an oligonucleotide containing 2′-O-methyl pseudoisocytidine with a DNA duplex at neutral pH
-
Ono, A., Ts'o, P.O.P. & Kan, L.S. (1992). Triplex formation of an oligonucleotide containing 2′-O-methyl pseudoisocytidine with a DNA duplex at neutral pH. J. Org. Chem. 57, 3225-3230.
-
(1992)
J. Org. Chem.
, vol.57
, pp. 3225-3230
-
-
Ono, A.1
Ts'o, P.O.P.2
Kan, L.S.3
-
20
-
-
0028033356
-
Solution structure and hydration patterns of a pyrimidine·purine·pyrimidine DNA triplex containing a novel T·CG base-triple
-
Radhakrishnan, I. & Patel, D.J. (1994). Solution structure and hydration patterns of a pyrimidine·purine·pyrimidine DNA triplex containing a novel T·CG base-triple. J. Mol. Biol. 241, 600-619.
-
(1994)
J. Mol. Biol.
, vol.241
, pp. 600-619
-
-
Radhakrishnan, I.1
Patel, D.J.2
-
22
-
-
0027918138
-
Solution structure of a purine·purine·pyrimidine DNA triplex containing G·GC and T·AT triples
-
Radhakrishnan, I. & Patel, D.J. (1993). Solution structure of a purine·purine·pyrimidine DNA triplex containing G·GC and T·AT triples. Structure 1, 135-152.
-
(1993)
Structure
, vol.1
, pp. 135-152
-
-
Radhakrishnan, I.1
Patel, D.J.2
-
23
-
-
0029610659
-
A nucleic acid helix formed by a peptide nucleic acid-DNA complex
-
Betts, L., Josey, J., Veal, J.M. & Jordan, S.R. (1995). A nucleic acid helix formed by a peptide nucleic acid-DNA complex. Science 270, 1838-1841.
-
(1995)
Science
, vol.270
, pp. 1838-1841
-
-
Betts, L.1
Josey, J.2
Veal, J.M.3
Jordan, S.R.4
-
24
-
-
0028986877
-
High resolution structure of a DNA helix forming (C-G)*G base triplets
-
Meervelt, L.V., et al., & Kennard, O. (1995). High resolution structure of a DNA helix forming (C-G)*G base triplets. Nature 374, 742-744.
-
(1995)
Nature
, vol.374
, pp. 742-744
-
-
Meervelt, L.V.1
Kennard, O.2
-
25
-
-
0001008705
-
Molecular dynamics simulation of ions and water around triplex DNA
-
Mohan, V., Smith, P.E. & Pettitt, B.M. (1993). Molecular dynamics simulation of ions and water around triplex DNA. J. Phys. Chem. 97, 12984-12990.
-
(1993)
J. Phys. Chem.
, vol.97
, pp. 12984-12990
-
-
Mohan, V.1
Smith, P.E.2
Pettitt, B.M.3
-
26
-
-
0029591501
-
Structure and stability of a model py·pu·pu DNA triple helix with a G·C·T mismatch by simulation
-
Weerasinghe, S., Smith, P.E. & Pettitt, B.M. (1996). Structure and stability of a model py·pu·pu DNA triple helix with a G·C·T mismatch by simulation. Biochemistry 34, 12984-12990.
-
(1996)
Biochemistry
, vol.34
, pp. 12984-12990
-
-
Weerasinghe, S.1
Smith, P.E.2
Pettitt, B.M.3
-
27
-
-
0028180778
-
T·CG triplet inversion in an antiparallel pur·pur·pyr DNA triplex. Conformational studies by NMR
-
Dittrich, K., Gu, J., Tinder, R., Hogan, M. & Gao, X. (1994). T·CG triplet inversion in an antiparallel pur·pur·pyr DNA triplex. Conformational studies by NMR. Biochemistry 33, 4111-4120.
-
(1994)
Biochemistry
, vol.33
, pp. 4111-4120
-
-
Dittrich, K.1
Gu, J.2
Tinder, R.3
Hogan, M.4
Gao, X.5
-
28
-
-
0023732144
-
Determination of three-dimensional structures of proteins from interproton distance data by dynamical simulated annealing from a random array of atoms
-
Nilges, M., Clore, G.M. & Gronenborn, A.M. (1988). Determination of three-dimensional structures of proteins from interproton distance data by dynamical simulated annealing from a random array of atoms. FEBS Lett. 239, 129-136.
-
(1988)
FEBS Lett.
, vol.239
, pp. 129-136
-
-
Nilges, M.1
Clore, G.M.2
Gronenborn, A.M.3
-
29
-
-
0025894164
-
Relaxation matrix refinement of the solution structure of squash trypsin inhibitor
-
Nilges, M., Habazettl, J., Brünger, AT. & Holak, T.A. (1991). Relaxation matrix refinement of the solution structure of squash trypsin inhibitor. J. Mol. Biol. 219, 499-510.
-
(1991)
J. Mol. Biol.
, vol.219
, pp. 499-510
-
-
Nilges, M.1
Habazettl, J.2
Brünger, A.T.3
Holak, T.A.4
-
31
-
-
0024974308
-
Definition and nomenclature of nucleic acid structure parameters
-
Anonymous. (1989). Definition and nomenclature of nucleic acid structure parameters. J. Mol. Biol. 205, 787-791.
-
(1989)
J. Mol. Biol.
, vol.205
, pp. 787-791
-
-
-
32
-
-
0019331504
-
Structure of a B-DNA dodecamer
-
Wing, R., et al., & Dickerson, R.E. (1980). Structure of a B-DNA dodecamer. Nature 287, 755-758.
-
(1980)
Nature
, vol.287
, pp. 755-758
-
-
Wing, R.1
Dickerson, R.E.2
-
33
-
-
0001605673
-
Sugar conformations in intermolecular DNA triplexes determined by coupling constants obtained by automated simulation of P. COSY cross peaks
-
Macaya, R.F., Schultze, P. & Feigon, J. (1992). Sugar conformations in intermolecular DNA triplexes determined by coupling constants obtained by automated simulation of P. COSY cross peaks. J. Am. Chem. Soc. 114, 781-783.
-
(1992)
J. Am. Chem. Soc.
, vol.114
, pp. 781-783
-
-
Macaya, R.F.1
Schultze, P.2
Feigon, J.3
-
34
-
-
84963315679
-
Solution conformation of a G·TA triple in an intramolecular pyrimidine·purine·pyrimidine DNA triplex
-
Radhakrishnan, I., Patel, D., Veal, J.M. & Gao, X. (1992). Solution conformation of a G·TA triple in an intramolecular pyrimidine·purine·pyrimidine DNA triplex. J. Am. Chem. Soc. 114, 6913-6915.
-
(1992)
J. Am. Chem. Soc.
, vol.114
, pp. 6913-6915
-
-
Radhakrishnan, I.1
Patel, D.2
Veal, J.M.3
Gao, X.4
-
35
-
-
0025744428
-
Evidence that a triplex-forming oligodeoxyribonucleotide binds to the c-myc promoter in HeLa cells, thereby reducing c-myc mRNA levels
-
Postel, E., Flint, S.J., Kessler, D.J. & Hogan, M.E. (1991). Evidence that a triplex-forming oligodeoxyribonucleotide binds to the c-myc promoter in HeLa cells, thereby reducing c-myc mRNA levels. Proc. Natl. Acad. Sci. USA 88, 8227-8331.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 8227-8331
-
-
Postel, E.1
Flint, S.J.2
Kessler, D.J.3
Hogan, M.E.4
-
36
-
-
0026567095
-
Analysis of promoter-specific repression by triple-helical DNA complexes in a eukaryotic cell-free transcription system
-
Maher, L.J., III, Dervan, P.B. & Wold, B. (1992). Analysis of promoter-specific repression by triple-helical DNA complexes in a eukaryotic cell-free transcription system. Biochemistry 31, 70-81.
-
(1992)
Biochemistry
, vol.31
, pp. 70-81
-
-
Maher III, L.J.1
Dervan, P.B.2
Wold, B.3
-
37
-
-
0029056619
-
Inhibition of nuclear protein binding to two sites in the murine c-myc promoter by intermolecular triplex formation
-
Reddoch, J.F. & Miller, D.M. (1995). Inhibition of nuclear protein binding to two sites in the murine c-myc promoter by intermolecular triplex formation. Biochemistry 34, 7659-7667.
-
(1995)
Biochemistry
, vol.34
, pp. 7659-7667
-
-
Reddoch, J.F.1
Miller, D.M.2
-
38
-
-
0000993488
-
Single strand targeted triplex formation: Parallel-stranded DNA hairpin duplexes for targeting pyrimidine strands
-
Kandimalla, E.R., Agrawal, S., Venkataraman, G. & Sasisekharan, V. (1995). Single strand targeted triplex formation: parallel-stranded DNA hairpin duplexes for targeting pyrimidine strands. J. Am. Chem. Soc. 117, 6416-6417.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 6416-6417
-
-
Kandimalla, E.R.1
Agrawal, S.2
Venkataraman, G.3
Sasisekharan, V.4
-
39
-
-
0027430690
-
Triplex formation inhibits HER-2/neu transcription in vitro
-
Ebbinghaus, S.W., Gee, J.E., Rodu, B., Mayfield, C.A., Sanders, G. & Miller, D.M. (1993). Triplex formation inhibits HER-2/neu transcription in vitro. J. Clin. Invest. 92, 2433-2439.
-
(1993)
J. Clin. Invest.
, vol.92
, pp. 2433-2439
-
-
Ebbinghaus, S.W.1
Gee, J.E.2
Rodu, B.3
Mayfield, C.A.4
Sanders, G.5
Miller, D.M.6
-
40
-
-
0028247186
-
Effect of abasic linker substitution on triplex formation, Sp1 binding, and specificity in an oligonucleotide target to the human Ha-ras promoter
-
Mayfield, C. & Miller, D. (1994). Effect of abasic linker substitution on triplex formation, Sp1 binding, and specificity in an oligonucleotide target to the human Ha-ras promoter. Nucleic Acids Res. 22, 1909-1916.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 1909-1916
-
-
Mayfield, C.1
Miller, D.2
-
41
-
-
0008613051
-
Binding of two different DNA sequences by conformational switching
-
Timothy, E.R., McKee, L. & Kool, ET. (1993). Binding of two different DNA sequences by conformational switching. J. Am. Chem. Soc. 115, 360-361.
-
(1993)
J. Am. Chem. Soc.
, vol.115
, pp. 360-361
-
-
Timothy, E.R.1
McKee, L.2
Kool, E.T.3
-
42
-
-
0026348013
-
Site-specific cleavage of human chromosome 4 mediated by triple-helix formation
-
Strobel, S.A., Doucette-Stamm, L.A., Riba, L., Housman, D. & Dervan, P.B. (1991). Site-specific cleavage of human chromosome 4 mediated by triple-helix formation. Science 254, 1639-1642.
-
(1991)
Science
, vol.254
, pp. 1639-1642
-
-
Strobel, S.A.1
Doucette-Stamm, L.A.2
Riba, L.3
Housman, D.4
Dervan, P.B.5
-
44
-
-
0024058085
-
The definition of generalized helical parameters and of axis curvature for irregular nucleic acids
-
Lavery, R. & Sklenar, H. (1988). The definition of generalized helical parameters and of axis curvature for irregular nucleic acids. J. Biomol. Struct. Dynam. 6, 63-91.
-
(1988)
J. Biomol. Struct. Dynam.
, vol.6
, pp. 63-91
-
-
Lavery, R.1
Sklenar, H.2
-
45
-
-
0026319199
-
Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons
-
Nicholls, A., Sharp, K. & Honig, B. (1991). Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins 4, 281-296.
-
(1991)
Proteins
, vol.4
, pp. 281-296
-
-
Nicholls, A.1
Sharp, K.2
Honig, B.3
-
46
-
-
0001457472
-
Hoogsteen versus reversed-Hoogsteen base pairing: DNA triple helices
-
Cheng, Y.K. & Pettitt, B.M. (1992). Hoogsteen versus reversed-Hoogsteen base pairing: DNA triple helices. J. Am. Chem. Soc. 114, 4465-4474.
-
(1992)
J. Am. Chem. Soc.
, vol.114
, pp. 4465-4474
-
-
Cheng, Y.K.1
Pettitt, B.M.2
-
47
-
-
84986512474
-
CHARMM: A program for macromolecular energy, minimization, and dynamics calculations
-
Brooks, B.R., et al., & Karplus, M. (1993). CHARMM: a program for macromolecular energy, minimization, and dynamics calculations. J. Comput. Chem. 4, 187-217.
-
(1993)
J. Comput. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Karplus, M.2
|