Min-21 and Min-23, the smallest peptides that fold like a cystine- stabilized β-sheet motif: Design, solution structure, and thermal stability

Biochemistry

Volumn 38, Issue 32, 1999, Pages 10615-10625

  Heitz, Annie ^a   Le Nguyen, Dung ^b   Chiche, Laurent ^a  

^a INSERM   (France)

^b HÔPITAL ARNAUD DE VILLENEUVE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO TERMINAL SEQUENCE; ARTICLE; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN STRUCTURE; THERMOSTABILITY;

AMINO ACID SEQUENCE; CUCURBITACEAE; CYSTINE; DISULFIDES; HEAT; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PEPTIDES; PLANT PROTEINS; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY; SEQUENCE HOMOLOGY, AMINO ACID; SOLUTIONS; THERMODYNAMICS; TRYPSIN INHIBITORS;

EID: 0033543156     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi990821k     Document Type: Article

References (50)

1. Nygren, P., and Uhlen, M. (1997) Curr. Opin. Struct. Biol. 7, 463-469.
2. Cunningham, B. C., and Wells, J. A. (1997) Curr. Opin. Struct. Biol. 7, 457-462.
3. Vita, C., Roumestand, C., Toma, F., and Menez, A. (1995) Proc. Natl. Acad. Sci. U.S.A. 92, 6404-6408.
4. Vita, C. (1997) Curr. Opin. Biotechnol. 8, 429-434.
5. Tamaoki, H., Miura, R., Kusunoki, M., Kyogoku, Y., Kobayashi, Y., and Moroder, L. (1998) Protein Eng. 11, 649-659.
6. Orengo, C. A., Flores, T. P., Taylor, W. R., and Thornton, J. M. (1993) Protein Eng. 6, 485-500.
7. Lesk, A. M. (1995) J. Mol. Graphics 13, 159-164.
8. Wang, Z.-X. (1998) Protein Eng. 11, 621-626.
9. Tamaoki, H., Kobayashi, Y., Nishimura, S., Ohkubo, T., Kyogoku, Y., Kumagaye, S., Kimura, T., and Sakakibara, S. (1991) Protein Eng. 4, 509-518.
10. Pagel, M., and Wemmer, D. (1994) Proteins 18, 205-215.
11. Pallaghy, P. K., Nielsen, K. J., Craik, D. J., and Norton, R. S. (1994) Protein Sci. 3, 1833-1839.
12. Norton, R. S., and Pallaghy, P. K. (1998) Toxicon 36, 1573-1583.
13. Narasimhan, L., Singh, J., Humblet, C., Guruprasad, K., and Blundell, T. (1994) Nat. Struct. Biol. 1, 850-852.
14. Heitz, A., Chiche, L., Le-Nguyen, D., and Castro, B. (1989) Biochemistry 28, 2392-2398.
15. Chiche, L., Heitz, A., Padilla, A., Le-Nguyen, D., and Castro, B. (1993) Protein Eng. 6, 675-682.
16. Kim, J. I., Konishi, S., Iwai, H., Kohno, T., Gouda, H., Shimada, I., Sato, K., and Arata, Y. (1995) J. Mol. Biol. 250, 659-671.
17. Pallaghy, P. K., Duggan, B. M., Pennington, M. W., and Norton, R. S. (1993) J. Mol. Biol. 234, 405-420.
18. Davis, J. H., Bradley, E. K., Miljanich, G. P., Nadasdi, L., Ramachandran, J., and Basus, V. J. (1993) Biochemistry 32, 7396-7405.
19. Vervoort, J., van den Hooven, H. W., Berg, A., Vossen, P., Vogelsang, R., Joosten, M. H., and de Wit, P. J. (1997) FEBS Lett. 404, 153-158.
20. Arai, K., Ishima, R., Morikawa, S., Miyasaka, A., Imoto, T., Yoshimura, S., Aimoto, S., and Akasaka, K. (1995) J. Biomol. NMR 5, 297-305.
21. Qu, Y., Liang, S., Ding, J., Liu, X., Zhang, R., and Gu, X. (1997) J. Protein Chem. 16, 565-574.
22. Saether, O., Craik, D. J., Campbell, I. D., Sletten, K., Juul, J., and Norman, D. G. (1995) Biochemistry 34, 4147-4158.
23. Daly, N. L., Koltay, A., Gustafson, K. R., Boyd, M. R., Casas-Finet, J. R., and Craik, D. J. (1999) J. Mol. Biol. 285, 333-345.
24. Le-Nguyen, D., Heitz, A., Chiche, L., El Hajji, M., and Castro, B. (1993) Protein Sci. 2, 165-174.
25. Harrison, P. M., and Sternberg, M. J. E. (1996) J. Mol. Biol. 264, 603-623.
26. Cornet, B., Bonmatin, J. M., Hetru, C., Hoffmann, J. A., Ptak, M., and Vovelle, F. (1995) Structure 3, 435-448.
27. Tam, J. P., and Shen, Z. Y. (1992) Int. J. Pept. Protein Res. 59, 464-471.
28. Güntert, P., Mumenthaler, C., and Wüthrich, K. (1997) J. Mol. Biol. 273, 283-298.
29. Case, D. A., Pearlman, D. A., Caldwell, J. W., Cheatham, T. E., Ross, W. S., Simmerling, C. L., Darden, T. A., Merz, K. M., Stanton, R. V., Cheng, A. L., Vincent, M., Crowley, M., Ferguson, D. M., Radmer, R. J., Seibel, G. L., Singh, U. C., Weiner, P. K., and Kollman, P. A. (1997) AMBER 5, University of California, San Francisco, CA.
30. Cornell, W. D., Cieplak, P., Bayly, C. I., Gould, I. R., Merz, K. M., Jr., Ferguson, D. M., Spellmeyer, D. C., Fox, T., Caldwell, J. W., and Kollman, P. A. (1995) J. Am. Chem. Soc. 117, 5179-5197.
31. Guenot, J. M., and Kollman, P. A. (1992) Protein Sci. 1, 1185-1205.
32. van Gunsteren, W. F., and Berendsen, H. J. C. (1977) Mol. Phys. 34, 1311-1327.
33. Merutka, G., Dyson, H. J., and Wright, P. E. (1995) J. Biomol. NMR 5, 14-24.
34. Wishart, D. S., and Sykes, B. D. (1994) Methods Enzymol. 239, 363-392.
35. Bundi, A., and Wüthrich, K. (1979) Biopolymers 18, 285-297.
36. Mer, G., Hietter, H., and Lefevre, J. F. (1996) Nat. Struct. Biol. 3, 45-53.
37. Pace, C. N., Shirley, B. A., and Thomson, J. A. (1990) in Protein structure: A practical approach (Creighton, T. E., Ed.) pp 311-330, Oxford University Press, Oxford, U.K.
38. Heitz, A., Le-Nguyen, D., Castro, B., and Chiche, L. (1997) Lett. Pept. Sci. 4, 245-249.
39. Heitz, A., Chiche, L., Le-Nguyen, D., and Castro, B. (1995) Eur. J. Biochem. 233, 837-846.
40. Wagner, G., Braun, W., Havel, T., Schaumann, T., Go, N., and Wuthrich, K. (1987) J. Mol. Biol. 196, 611-639.
41. Kuhlman, B., Boice, J., Fairman, R., and Raleigh, D. (1998) Biochemistry 37, 1025-1032.
42. Holtzer, M. E., Lovett, E. G., d'Avignon, D. A., and Holtzer, A. (1997) Biophys. J. 73, 1031-1041.
43. Murphy, K. P., Privalov, P. L., and Gill, S. J. (1990) Science 247, 559-561.
44. Rolka, K., Kupryszewski, G., Ragnarsson, U., Otlewski, J., Krokoszynska, I., and Wilusz, T. (1991) in Peptides 1990 (Giralt, E., and Andreu, D., Eds.) pp 768-771, ESCOM Science Publishers, Leiden, The Netherlands.
45. Kraulis, P. (1991) J. Appl. Crystallogr. 24, 946-950.
46. Merritt, E. A., and Bacon, D. J. (1997) Methods Enzymol. 277, 505-524.
47. Bernstein, F. C., Koetzle, T. F., Williams, G. J. B., Meyer, E. F., Jr., Brice, M. D., Rodgers, J. R., Kennard, O., Shimanouchi, T., and Tasumi, M. (1977) J. Mol. Biol. 112, 535-542.
48. Aumelas, A., Chiche, L., Mahe, E., Le Nguyen, D., Sizun, P., Berthaud, P., and Perly, B. (1991) Int. J. Pept. Protein Res. 37, 315-324.
49. Wüthrich, K., Billeter, M., and Braun, W. (1983) J. Mol. Biol. 169, 949-961.
50. Wüthrich, K. (1986) NMR of Proteins and Nucleic Acids, John Wiley & Sons Inc., New York.