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note
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2-terminal to the fused cDNA. Unless specified, all constructs expressed complete coding sequence starting from the second amino acid. RT-PCR experiments were performed using tissue or cell sources as indicated. The RNAs were prepared with 50 mg of tissue (or PC12 cells harvested from one 3.5-cm dish) using TRIZOL (GIBCO-BRL, Rockville, MD) according to the manufacturer's protocol. The cDNA synthesis was carried out using 2 μg of RNA. PCR amplification was performed using the following four primers: ML1654, ML1659, ML1653, and ML1553. All primer sequences are available upon request. The ML1654/ML1659 pair amplified fragments of 303 bp for ZIP1 and 222 bp for ZIP2, whereas the ML 1653/ML1S53 pair amplified fragments of 473 bp for ZIP1 and 392 bp for ZIP2. Results from both pairs of primers were identical. Data obtained from ML1653 and ML1553 were not shown. The PCR protocol included 20 cycles of 1 min of denaturation at 92°C, 1 min of annealing at 55°C, and 30 s of extension at 68°C.
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30
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Winder, S.J.5
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31
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0344102344
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note
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Single-letter abbreviations for the amino acid residues are as follows: A, Ala; C, Cys; D, Asp; E, Glu; F, Phe; G, Gly; H, His; I, Ile; K, Lys; L, Leu; M, Met; N, Asn; P, Pro; Q, Gln; R, Arg; S, Ser; T, Thr; V, Val; W, Trp; and Y, Tyr. X indicates any residue.
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33
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0345396054
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unpublished data
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J. Gong et al., unpublished data.
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Gong, J.1
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34
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0030614462
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Preparation of nondetergent cell lysate was carried out using buffer conditions similar to procedures described in (30) except no detergent was included. Gel filtration chromatography was done according the published protocol in X.-D. Li et al. [J. Biol. Chem. 272, 705 (1997)].
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J. Biol. Chem.
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Li, X.-D.1
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35
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0344964712
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note
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33P]-γ-ATP (10 mCi/ml). Unless specified, all phosphorylation reactions were incubated for 30 min at 30°C. The reaction was stopped by addition of SDS loading buffer. After boiling for 5 min, the samples were separated by SDS-PAGE. Protein phosphorylation was detected by autoradiography using Kodak scientific imaging films. Quantification of the relative amount of radioactivity was performed with a phosphor imager (FUJIX BAS 1000, Fuji, Tokyo).
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36
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0344964713
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unpublished data
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J. Gong et al., unpublished data.
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Gong, J.1
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40
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0345396050
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note
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Antibodies for ZIP and Kvβ2 were generated by immunizing rabbits with GST-fusion proteins corresponding to the full-length cDNAs of rat ZIP1 and Kvβ2. The PKCζ and PKCβII antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA).
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41
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0344533708
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note
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The HA-tagged Kvβ2 was expressed by transient transfection and cell tysates from HA-Kvβ2 and mock-transfected cells were prepared according to the protocol described in Yu et al. (10). Affi-gel 10 (Bio-Rad, CA) was used to conjugate GST control, GST-ZIP1 and GST-ZIP2. The binding reactions were performed using 20 μl beads and 100 μl of cell extracts in a buffer containing 20 mM Hepes (pH 7.5), 150 mM NaCl, 1 mM EDTA, 1 mM 2-mercaptoethanol. After incubation on ice for 1 hour, the beads were washed three times, and the bound material was released by boiling the beads in SDS-sample buffer. The KvβZ binding was tested by fractionating the bound material on SDS gel followed by immunoblot with anti-HA antibody.
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42
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0344964708
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note
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2.
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43
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0344102339
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unpublished data
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J. Gong et al., unpublished data.
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Gong, J.1
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44
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0344964707
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note
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3 and protease inhibitor cocktail (1 mM phenylmethylsulfonyl fluoride, 1 μg/ml leupeptin, 2 μg/ml aprotinin, and 1 μg/ml pepstatin). Homogenization was carried out at 4°C using a Dounce homogenizer with a typical tissue to buffer ratio of B ml buffer per gram of tissue. After 20 strokes of homogenization, homogenates were centrifuged at 10,000g for 5 min and the supematants were collected. To conjugate antibodies to Protein A-agarose, 40 μl of Protein A beads (Sigma Chemical, St. Louis, MO) in 1 ml of PBS were first incubated overnight with 20 μl of antiserum at 4°C. After removal of unbound material, the agarose was washed three times with PBS, resuspended in 500 μl of 0.2 M sodium borate (pH 9.0). The cross-linking was initiated by adding dimethyloimelimidate to a final concentration of 20 mM. After 30 min incubation at room temperature, the reaction was stopped by addition of 500 μl of 0.2 M ethanolamine. After 2 hours incubation, the conjugated protein A-agarose was washed three times with PBS. The antibody binding was carried out by incubating 200 μl of soluble lysate with 10 μl of antibody-protein A agarose. After overnight incubation at 4°C, the Protein A agarose was collected by centrifugation at 5,000g for 2 min, and washed three times with PBS. The individual Protein A pellets were treated with 10 μl of 2× SDS sample buffer at 100°C for 5 min. The soluble protein samples were separated by SDS-PAGE. The immunoprecipitated polypeptides were detected by immunoblot using the corresponding antibodies as indicated.
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45
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0345396048
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note
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5 cells were seeded in a 3.5-cm dish and allowed to grow for 24 hours in the presence of 10% fetal bovine serum and 5% heat inactivated horse serum. The NGF stimulation was initiated by adding purified NGF to a final concentration of 0.1 μg per ml. The cells were allowed to grow for 72 hours and harvested for analyses.
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46
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0344964706
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note
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We thank D. Ginty for providing purified NGF, A. Lanahan and P. Wortey for cDNA libraries, J. Baraban for anti-translin antibody, Y. Ono for rat PKCζ cDNA, L Roman for in situ hybridization technique, M. Regan for RT-PCR technique, S. Wang for the control GST fusion protein and R. Butzner for help with manuscript preparation. We also thank C Montell, P. Gillespie, and members of the Li Lab for comments on this manuscript M.B. was a NSF predoctoral fellow. R.H. is supported in part by a postdoctoral fellowship from American Heart Association. M.L. is supported by a grant from NIH (NS33324) and an American Heart Association-Pfizer award.
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