Simple model to study insertion of a protein into a membrane

Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics

Volumn 60, Issue 6, 1999, Pages 7290-7298

  Bonaccini, Riccardo ^a   Seno, Flavio ^a  

^a UNIVERSITY OF PADOVA   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; COLICIN; LIPID BILAYER; MEMBRANE PROTEIN; SOLUTION AND SOLUBILITY;

CHEMICAL MODEL; CHEMICAL PHENOMENA; CHEMISTRY; COMPARATIVE STUDY; COMPUTER SIMULATION; LIPID BILAYER; PROTEIN CONFORMATION; PROTEIN FOLDING; SOLUBILITY; SOLUTION AND SOLUBILITY;

AMINO ACIDS; COLICINS; COMPUTER SIMULATION; HYDROPHOBIC AND HYDROPHILIC INTERACTIONS; LIPID BILAYERS; MEMBRANE PROTEINS; MODELS, CHEMICAL; PROTEIN CONFORMATION; PROTEIN FOLDING; SOLUBILITY; SOLUTIONS;

EID: 0033487679     PISSN: 1063651X     EISSN: None     Source Type: Journal    
DOI: 10.1103/PhysRevE.60.7290     Document Type: Article

References (45)

1. C. Branden and J. Tooze, Introduction to Protein Structure (Garland, New York, 1991).
2. T. E. Creighton, Proteins: Structures and Molecular Properties, (Freeman, New York, 1992).
3. C. Ostermeier and H. Michel, Curr. Opin. Struct. Biol. 7, 697 (1997).
4. G. von Heijne, Prog. Biophys. Mol. Biol. 66, 113 (1996).
5. D.M. Engelman, Science 274, 1850 (1996).
6. F.G. van der Goot, J.M. Gonzalez-Manas, J.H. Lakey, and F. Pattus, Nature (London) 354, 408 (1991).
7. J.L. Popot and D.M. Engelman, Biochemistry 29, 4031 (1990).
8. D.C. Rees, L. De Antonio and D. Eisenberg, Science 245, 510 (1989).
9. W.A. Cramer, D.M. Engelman, G von Heijne, and D.C. Rees, FASEB J. 6, 3397 (1992).
10. F.A. Samatey, C. Xu, and J.L. Popot, Proc. Natl. Acad. Sci. USA 92, 4577 (1995).
11. T. Pilpel private communication.
12. K.F. Lau, and K.A. Dill, Macromolecules 22, 3986 (1989).
13. H.S. Chan and K.A. Dill, Macromolecules 22, 4559 (1989).
14. H.S. Chan and K.A. Dill, Phys. Today 46(2), 24 (1993).
15. A. Sali, E. Shakhnovich, and M. Karplus, J. Mol. Biol. 235, 1614 (1994).
16. A. Sali, E. Shakhnovich, and M. Karplus, Nature (London) 369, 248 (1994).
17. K.A. Dill, S. Bromberg, K. Yue, K.M. Fiebig, D.P. Yee, and P.D. Thomas, Protein Sci. 4, 561 (1995).
18. M.R. Betancourt and J.N. Onuchic, J. Chem. Phys. 103, 773 (1995).
19. H. Li, R. Helling, C. Tang, and N.S. Wingreen, Science 273, 666 (1996).
20. H. Li, C. Tang, and N.S. Wingreen, Phys. Rev. Lett. 79, 765 (1997).
21. C. Micheletti, J.R. Banavar, A. Maritan, and F. Seno, Phys. Rev. Lett. 80, 5683 (1998).
22. M. Milik and J. Skolnick, Proc. Natl. Acad. Sci. USA 89, 9391 (1992).
23. M. Milik and J. Skolnick, Proteins 15, 10 (1993).
24. D. Gersappe, W. Li, and A.C. Balazs, J. Chem. Phys. 99, 7209 (1993).
25. K. Yue, K.M. Fiebig, P.D. Thomas, H.S. Chan, E. Shakhnovich, and K.A. Dill, Proc. Natl. Acad. Sci. USA 90, 7195 (1993).
26. J.M. Deutsch and T. Kurosky, Phys. Rev. Lett. 76, 323 (1996).
27. F. Seno, M. Vendruscolo, A. Maritan, and J.R. Banavar, Phys. Rev. Lett. 77, 1901 (1996).
28. M.P. Morrisey and E. Shakhnovich, Folding Des. 1, 391 (1996).
29. C. Micheletti, F. Seno, A. Maritan, and J.R. Banavar, Phys. Rev. Lett. 80, 2237 (1998).
30. P.D. Thomas and K.A. Dill, J. Mol. Biol. 257, 457 (1996).
31. P.D. Thomas and K.A. Dill, Proc. Natl. Acad. Sci. USA 93, 11 628 (1996).
32. F. Seno, A. Maritan, and J.R. Banavar, Proteins: Struct., Funct., Genet. 30, 244 (1998).
33. F. Seno, C. Micheletti, A. Maritan, and J.R. Banavar, Phys. Rev. Lett. 81, 2172 (1998).
34. B.H. Park and M. Levitt, J. Mol. Biol. 249, 493 (1995).
35. D.C. Rapaport, Comput. Phys. Rep. 5, 265 (1987).
36. S. Kamtekar, J.M. Schiffer, H. Xiong, J.M. Babik, and M.H. Hecht, Science 262, 1680 (1993).
37. M.H.J. Cordes, A.R. Davidson, and R.T Sauer, Curr. Opin. Struct. Biol. 6, 3 (1996).
38. C. Micheletti, F. Seno, A. Maritan, and J.R. Banavar, Proteins: Struct., Funct., Genet. 32, 80 (1998).
39. H.S. Chan and K.A. Dill, J. Chem. Phys. 95, 3775 (1991).
40. C. Anfinsen, Science 181, 223 (1973).
41. A.C. Borel and S.M. Simon, Cell 85, 379 (1996).
42. W. Mothes, S.U. Heinrich, R. Graf, I.M. Nilsson, G. von Heijne, J. Brunner, and T.A. Rapoport, Cell 89, 523 (1997).
43. R.S. Hegde and V.R. Lingappa, Cell 91, 575 (1997).
44. G. von Heijne (private communication).
45. R. Bonaccini and F. Seno (unpublished).