-
1
-
-
0022337674
-
An invertible element of DNA controls phase variation of type 1 fimbriae of Escherichia coli
-
Abraham, J.M., Freitag, C.S., Clements, J.R., and Eisenstein, B.I. (1985) An invertible element of DNA controls phase variation of type 1 fimbriae of Escherichia coli. Proc Natl Acad Sci USA 82: 5724-5727.
-
(1985)
Proc Natl Acad Sci USA
, vol.82
, pp. 5724-5727
-
-
Abraham, J.M.1
Freitag, C.S.2
Clements, J.R.3
Eisenstein, B.I.4
-
2
-
-
0026586392
-
Evidence for the second conserved arginine residue in the integrase family of recombination proteins
-
Abremski, K.E., and Hoess, R.H. (1992) Evidence for the second conserved arginine residue in the integrase family of recombination proteins. Protein Eng 5: 87-91.
-
(1992)
Protein Eng
, vol.5
, pp. 87-91
-
-
Abremski, K.E.1
Hoess, R.H.2
-
3
-
-
0022669622
-
The integrase family of site-specific recombinases: Regional similarities and global diversity
-
Argos, P., Landy, A., Abremski, K., Egan, J.B., Haggard-Ljundquist, E., Hoess, R.H., et al. (1986) The integrase family of site-specific recombinases: regional similarities and global diversity. EMBO J 5: 433-440.
-
(1986)
EMBO J
, vol.5
, pp. 433-440
-
-
Argos, P.1
Landy, A.2
Abremski, K.3
Egan, J.B.4
Haggard-Ljundquist, E.5
Hoess, R.H.6
-
4
-
-
0004270170
-
-
New York, NY: John Wiley and Sons
-
Ausubel, F.M., Brent, R., Kingston, R.E., Seidman, J.G., Smith, D.D., and Struhl, K. (1987) Current Protocols in Molecular Biology. New York, NY: John Wiley and Sons.
-
(1987)
Current Protocols in Molecular Biology
-
-
Ausubel, F.M.1
Brent, R.2
Kingston, R.E.3
Seidman, J.G.4
Smith, D.D.5
Struhl, K.6
-
5
-
-
0022509196
-
Identification and characterization of recD, a gene affecting plasmid maintenance and recombination in Escherichia coli
-
Biek, D.P., and Cohen, S.N. (1986) Identification and characterization of recD, a gene affecting plasmid maintenance and recombination in Escherichia coli. J Bacteriol 167: 594-603.
-
(1986)
J Bacteriol
, vol.167
, pp. 594-603
-
-
Biek, D.P.1
Cohen, S.N.2
-
6
-
-
0027422093
-
Two related recombinases are required for site-specific recombination at dif and cef in E. coli K-12
-
Blakely, G., May, G., McCullough, R., Arciszewska, L.K., Burke, M., Lovett, ST., and Sherratt, D.J. (1993) Two related recombinases are required for site-specific recombination at dif and cef in E coli K-12. Cell 75: 351-361.
-
(1993)
Cell
, vol.75
, pp. 351-361
-
-
Blakely, G.1
May, G.2
McCullough, R.3
Arciszewska, L.K.4
Burke, M.5
Lovett, S.T.6
Sherratt, D.J.7
-
7
-
-
0025953658
-
Type 1 fimbriation and fimE mutants of Escherichia coli K-12
-
Blomfield, I.C., McClain, M.S., Princ, J.A., Calie, P.J., and Eisenstein, B.I. (1991) Type 1 fimbriation and fimE mutants of Escherichia coli K-12. J Bacteriol 173: 5298-5307.
-
(1991)
J Bacteriol
, vol.173
, pp. 5298-5307
-
-
Blomfield, I.C.1
McClain, M.S.2
Princ, J.A.3
Calie, P.J.4
Eisenstein, B.I.5
-
8
-
-
0027459923
-
Lrp stimulates phase variation of type 1 fimbriation in Escherichia coli K-12
-
Blomfield, I.C., Calie, P.J., Eberhardt, K.J., McClain, M.S., and Eisenstein, B.I. (1993) Lrp stimulates phase variation of type 1 fimbriation in Escherichia coli K-12. J Bacteriol 175: 27-36.
-
(1993)
J Bacteriol
, vol.175
, pp. 27-36
-
-
Blomfield, I.C.1
Calie, P.J.2
Eberhardt, K.J.3
McClain, M.S.4
Eisenstein, B.I.5
-
9
-
-
0031023410
-
Integration host factor stimulates both FimB- and FimE-mediated site-specific DNA inversion that controls phase variation of type 1 fimbriae expression in Escherichia coli
-
Blomfield, I.C., Kulasekara, D.H., and Eisenstein, B.I. (1997) Integration host factor stimulates both FimB-and FimE-mediated site-specific DNA inversion that controls phase variation of type 1 fimbriae expression in Escherichia coli. Mol Microbiol 23: 705-717.
-
(1997)
Mol Microbiol
, vol.23
, pp. 705-717
-
-
Blomfield, I.C.1
Kulasekara, D.H.2
Eisenstein, B.I.3
-
10
-
-
0022351236
-
Control of lambda site-specific recombination
-
Bushman, W., Thompson, J.F., Vargas, L, and Landy, A. (1985) Control of lambda site-specific recombination. Science 230: 906-911.
-
(1985)
Science
, vol.230
, pp. 906-911
-
-
Bushman, W.1
Thompson, J.F.2
Vargas, L.3
Landy, A.4
-
11
-
-
0030669159
-
Structure-function correlations in the XerD site-specific recombinase revealed by pentapeptide scanning mutagenesis
-
Cao, Y., Hallet, B., Sherratt, D.J., and Hayes, F. (1997) Structure-function correlations in the XerD site-specific recombinase revealed by pentapeptide scanning mutagenesis. J Mol Biol 274: 39-53.
-
(1997)
J Mol Biol
, vol.274
, pp. 39-53
-
-
Cao, Y.1
Hallet, B.2
Sherratt, D.J.3
Hayes, F.4
-
12
-
-
0026641669
-
Functional analysis of box I mutations in yeast site-specific recombinase Flp and R: Pairwise complementation with recombinase variants lacking activesite tyrosine
-
Chen, J.-W., Evans, B.R., Yang, S.-H., Araki, H., Oshima, Y., and Jayaram, M. (1992) Functional analysis of box I mutations in yeast site-specific recombinase Flp and R: pairwise complementation with recombinase variants lacking activesite tyrosine. Mol Cell Biol 12: 3757-3765.
-
(1992)
Mol Cell Biol
, vol.12
, pp. 3757-3765
-
-
Chen, J.-W.1
Evans, B.R.2
Yang, S.-H.3
Araki, H.4
Oshima, Y.5
Jayaram, M.6
-
13
-
-
0023640638
-
Fimbrial phase variation in Escherichia coli: Dependence on integration host factor and homologies with other site-specific recombinases
-
Dorman, C.J., and Higgins, C.F. (1987) Fimbrial phase variation in Escherichia coli: dependence on integration host factor and homologies with other site-specific recombinases. J Bacteriol 169: 3840-3843.
-
(1987)
J Bacteriol
, vol.169
, pp. 3840-3843
-
-
Dorman, C.J.1
Higgins, C.F.2
-
14
-
-
0028073705
-
The site-specific recombination system regulating expression of the Type 1 fimbrial subunit gene of Escherichia coli is sensitive to changes in DNA supercoiling
-
Dove, S.L., and Dorman, C.J. (1994) The site-specific recombination system regulating expression of the Type 1 fimbrial subunit gene of Escherichia coli is sensitive to changes in DNA supercoiling. Mol Microbiol 14: 975-988.
-
(1994)
Mol Microbiol
, vol.14
, pp. 975-988
-
-
Dove, S.L.1
Dorman, C.J.2
-
15
-
-
0029828216
-
Multicopy fimB gene expression in Escherichia coli: Binding to inverted repeats in vivo, effect on fimA gene transcription and DNA inversion
-
Dove, S.L., and Dorman, C.J. (1996) Multicopy fimB gene expression in Escherichia coli: binding to inverted repeats in vivo, effect on fimA gene transcription and DNA inversion. Mol Microbiol 21: 1161-1173.
-
(1996)
Mol Microbiol
, vol.21
, pp. 1161-1173
-
-
Dove, S.L.1
Dorman, C.J.2
-
16
-
-
0027429553
-
DNA rearrangements and phenotypic switching in prokaryotes
-
Dybvig, K. (1993) DNA rearrangements and phenotypic switching in prokaryotes. Mol Microbiol 10: 465-471.
-
(1993)
Mol Microbiol
, vol.10
, pp. 465-471
-
-
Dybvig, K.1
-
17
-
-
0019840794
-
Phase variation of type 1 fimbriae in Escherichia coli is under transcriptional control
-
Eisenstein, B.I. (1981) Phase variation of type 1 fimbriae in Escherichia coli is under transcriptional control. Science 214: 347-349.
-
(1981)
Science
, vol.214
, pp. 347-349
-
-
Eisenstein, B.I.1
-
18
-
-
0023404815
-
Integration host factor is required for the DNA inversion that controls phase variation in Escherichia coli
-
Eisenstein, B.I., Sweet, D.S., Vaughn, V., and Friedman, D.I. (1987) Integration host factor is required for the DNA inversion that controls phase variation in Escherichia coli. Proc Natl Acad Sci USA 84: 6506-6510.
-
(1987)
Proc Natl Acad Sci USA
, vol.84
, pp. 6506-6510
-
-
Eisenstein, B.I.1
Sweet, D.S.2
Vaughn, V.3
Friedman, D.I.4
-
19
-
-
0024616602
-
Position and density effects on repression by stationary and mobile DNA binding proteins
-
Elledge, S.J., and Davis, R.W. (1989) Position and density effects on repression by stationary and mobile DNA binding proteins. Genes Dev 3: 185-197.
-
(1989)
Genes Dev
, vol.3
, pp. 185-197
-
-
Elledge, S.J.1
Davis, R.W.2
-
20
-
-
0030816550
-
The integrase family of tyrosine recombinases: Evolution of a conserved active site
-
Esposito, D., and Scocca, J. (1997) The integrase family of tyrosine recombinases: evolution of a conserved active site. Nucleic Acids Res 18: 3605-3614.
-
(1997)
Nucleic Acids Res
, vol.18
, pp. 3605-3614
-
-
Esposito, D.1
Scocca, J.2
-
21
-
-
0025129866
-
Identification of the activesite tyrosine of Flp recombinase
-
Evans, B.R., Chen, J.W., Parsons, R.L., Bauer, T.K., Teplow, D.B., and Jayaram, M. (1990) Identification of the activesite tyrosine of Flp recombinase. J Biol Chem 265: 18504-18510.
-
(1990)
J Biol Chem
, vol.265
, pp. 18504-18510
-
-
Evans, B.R.1
Chen, J.W.2
Parsons, R.L.3
Bauer, T.K.4
Teplow, D.B.5
Jayaram, M.6
-
22
-
-
0026717832
-
Mutagenesis of a conserved region of the gene encoding the Flp recombinase of Saccharomyces cerevisiae
-
Friesen, H., and Sadowski, P.D. (1992) Mutagenesis of a conserved region of the gene encoding the Flp recombinase of Saccharomyces cerevisiae. J Mol Biol 225: 313-326.
-
(1992)
J Mol Biol
, vol.225
, pp. 313-326
-
-
Friesen, H.1
Sadowski, P.D.2
-
23
-
-
0027439272
-
Environmental regulation of the fim switch controlling type 1 fimbrial phase variation in Escherichia coli K-12: Effects of temperature and media
-
Gally, D.L., Bogan, J.A., Eisenstein, B.I., and Blomfield, I.C. (1993) Environmental regulation of the fim switch controlling type 1 fimbrial phase variation in Escherichia coli K-12: effects of temperature and media. J Bacteriol 175: 6186-6193.
-
(1993)
J Bacteriol
, vol.175
, pp. 6186-6193
-
-
Gally, D.L.1
Bogan, J.A.2
Eisenstein, B.I.3
Blomfield, I.C.4
-
24
-
-
0029786143
-
Interaction of FimB and FimE with the fim switch that controls the phase variation of type 1 fimbriae in Escherichia coli K-12
-
Gally, D.L., Leathart, J., and Blomfield, I.C. (1996) Interaction of FimB and FimE with the fim switch that controls the phase variation of type 1 fimbriae in Escherichia coli K-12. Mol Microbiol 21: 725-738.
-
(1996)
Mol Microbiol
, vol.21
, pp. 725-738
-
-
Gally, D.L.1
Leathart, J.2
Blomfield, I.C.3
-
25
-
-
0028125987
-
Mapping the functional domains of bacteriophage lambda integrase protein
-
Han, Y.W., Gumport, R.I., and Gardner, J.F. (1994) Mapping the functional domains of bacteriophage lambda integrase protein. J Mol Biol 235: 908-925.
-
(1994)
J Mol Biol
, vol.235
, pp. 908-925
-
-
Han, Y.W.1
Gumport, R.I.2
Gardner, J.F.3
-
26
-
-
0030904786
-
Molecular organization in site-specific recombination: The catalytic domain of bacteriophage HP1 integrase at 2.7 A resolution
-
Hickman, A.B., Waninger, S., Scocca, J.J., and Dyda, F. (1997) Molecular organization in site-specific recombination: the catalytic domain of bacteriophage HP1 integrase at 2.7 A resolution. Cell 89: 227-237.
-
(1997)
Cell
, vol.89
, pp. 227-237
-
-
Hickman, A.B.1
Waninger, S.2
Scocca, J.J.3
Dyda, F.4
-
27
-
-
0022731677
-
Two regulatory fim genes, fimB and fimE, control the phase variation of type 1 fimbriae in Escherichia coli
-
Klemm, P. (1986) Two regulatory fim genes, fimB and fimE, control the phase variation of type 1 fimbriae in Escherichia coli. EMBO J 5: 1389-1393.
-
(1986)
EMBO J
, vol.5
, pp. 1389-1393
-
-
Klemm, P.1
-
28
-
-
0033059806
-
The molecular basis for the specificity of fimE in the phase variation of type 1 fimbriae of Escherichia coli K-12
-
Kulasekara, H.D., and Blomfield, I.C. (1999) The molecular basis for the specificity of fimE in the phase variation of type 1 fimbriae of Escherichia coli K-12. Mol Microbiol 31: 1171-1181.
-
(1999)
Mol Microbiol
, vol.31
, pp. 1171-1181
-
-
Kulasekara, H.D.1
Blomfield, I.C.2
-
29
-
-
0001656001
-
Flexibility in DNA recombination: Structure of the lambda integrase catalytic core
-
Kwon, H.J., Tirumalai, R., Landy, A., and Ellenberger, T. (1997) Flexibility in DNA recombination: structure of the lambda integrase catalytic core. Science 276: 126-131.
-
(1997)
Science
, vol.276
, pp. 126-131
-
-
Kwon, H.J.1
Tirumalai, R.2
Landy, A.3
Ellenberger, T.4
-
30
-
-
0027093070
-
Functional analysis of Box II mutations in yeast site-specific recombinase Flp and R
-
Lee, J., Serre, M.-C., Yang, S.-W., Whang, I., Araki, H., Oshima, Y., and Jayaram, M. (1992) Functional analysis of Box II mutations in yeast site-specific recombinase Flp and R. J Mol Biol 228: 1091-1103.
-
(1992)
J Mol Biol
, vol.228
, pp. 1091-1103
-
-
Lee, J.1
Serre, M.-C.2
Yang, S.-W.3
Whang, I.4
Araki, H.5
Oshima, Y.6
Jayaram, M.7
-
31
-
-
0025088052
-
Low copy number plasmids for regulated low-level expression of cloned genes in Escherichia coli with blue/white insert screening capability
-
Lerner, C.J., and Inouye, M. (1990) Low copy number plasmids for regulated low-level expression of cloned genes in Escherichia coli with blue/white insert screening capability. Nucleic Acids Res 18: 4631.
-
(1990)
Nucleic Acids Res
, vol.18
, pp. 4631
-
-
Lerner, C.J.1
Inouye, M.2
-
32
-
-
0026052981
-
Roles of fimB and fimE in site-specific DNA inversion associated with phase variation of type 1 fimbriae in Escherichia coli
-
McClain, M.S., Blomfield, I.C., and Eisenstein, B.I. (1991) Roles of fimB and fimE in site-specific DNA inversion associated with phase variation of type 1 fimbriae in Escherichia coli. J Bacteriol 173: 5308-5314.
-
(1991)
J Bacteriol
, vol.173
, pp. 5308-5314
-
-
McClain, M.S.1
Blomfield, I.C.2
Eisenstein, B.I.3
-
33
-
-
0003842951
-
-
Cold Spring Harbor, NY: Cold Spring, Harbor Laboratory Press
-
Miller, J.H. (1992) A Short Course in Bacterial Genetics. Cold Spring Harbor, NY: Cold Spring, Harbor Laboratory Press.
-
(1992)
A Short Course in Bacterial Genetics
-
-
Miller, J.H.1
-
34
-
-
0038659759
-
Similarities and differences among 105 members of the int family of site-specific recombinases
-
Nunes-Düby, S.E., Kwon, H.J., Tirumalai, R.S., Ellenberger, T., and Landy, A. (1998) Similarities and differences among 105 members of the Int family of site-specific recombinases. Nucleic Acids Res 26: 391-406.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 391-406
-
-
Nunes-Düby, S.E.1
Kwon, H.J.2
Tirumalai, R.S.3
Ellenberger, T.4
Landy, A.5
-
35
-
-
0024373863
-
Regulation of the phase switch controlling expression of type 1 fimbriae in Escherichia coli
-
Pallesen, L., Madsen, O., and Klemm, P. (1989) Regulation of the phase switch controlling expression of type 1 fimbriae in Escherichia coli. Mol Microbiol 3: 925-931.
-
(1989)
Mol Microbiol
, vol.3
, pp. 925-931
-
-
Pallesen, L.1
Madsen, O.2
Klemm, P.3
-
36
-
-
0009054752
-
Mechanism of cleavage and ligation by FLP recombinase: Classification of mutations in FLP protein by in vitro complementation analysis
-
Pan, G., Luetke, K., and Sadowski, P.D. (1993) Mechanism of cleavage and ligation by FLP recombinase: classification of mutations in FLP protein by in vitro complementation analysis. Mol Cell Biol 265: 30-39.
-
(1993)
Mol Cell Biol
, vol.265
, pp. 30-39
-
-
Pan, G.1
Luetke, K.2
Sadowski, P.D.3
-
37
-
-
0024278670
-
Suicide recombination substrates yield covalent λ integrase-DNA complexes and lead to identification of the active-site tyrosine
-
Pargellis, C.A., Nunes-Düby, S-E., Moitoso de Vargas, L., and Landy, A. (1988) Suicide recombination substrates yield covalent λ integrase-DNA complexes and lead to identification of the active-site tyrosine. J Biol Chem 263: 7678-7685.
-
(1988)
J Biol Chem
, vol.263
, pp. 7678-7685
-
-
Pargellis, C.A.1
Nunes-Düby, S.E.2
Moitoso De Vargas, L.3
Landy, A.4
-
38
-
-
0025264936
-
Functional analysis of Arg-308 mutants of Flp recombinase. Possible role of Arg-308 in coupling substrate binding to catalysis
-
Parsons, R.L., Evans, B.R., Zheng, L., and Jayaram, M. (1990) Functional analysis of Arg-308 mutants of Flp recombinase. Possible role of Arg-308 in coupling substrate binding to catalysis. J Biol Chem 265: 4527-4533.
-
(1990)
J Biol Chem
, vol.265
, pp. 4527-4533
-
-
Parsons, R.L.1
Evans, B.R.2
Zheng, L.3
Jayaram, M.4
-
39
-
-
0026438799
-
DNA inversion in phages and bacteria
-
van der Putte, P., and Goosen, N. (1992) DNA inversion in phages and bacteria. Trends Genet 8: 457-462.
-
(1992)
Trends Genet
, vol.8
, pp. 457-462
-
-
Van Der Putte, P.1
Goosen, N.2
-
40
-
-
0031893034
-
Leucine alters the interaction of the leucine-responsive regulatory protein (Lrp) with the fim switch to stimulate site-specific recombination in Escherichia coli
-
Roesch, P.L., and Blomfield, I.C. (1998) Leucine alters the interaction of the leucine-responsive regulatory protein (Lrp) with the fim switch to stimulate site-specific recombination in Escherichia coli. Mol Microbiol 27: 751-761.
-
(1998)
Mol Microbiol
, vol.27
, pp. 751-761
-
-
Roesch, P.L.1
Blomfield, I.C.2
-
41
-
-
0028300741
-
Combining evolutionary information and neural networks to predict protein secondary structure
-
Rost, B., and Sander, C. (1994) Combining evolutionary information and neural networks to predict protein secondary structure. Proteins 19: 55-72.
-
(1994)
Proteins
, vol.19
, pp. 55-72
-
-
Rost, B.1
Sander, C.2
-
42
-
-
0030842186
-
The transactivation region of the Fis protein that controls site-specific DNA inversion contains extended mobile β-hairpin arms
-
Safo, M.K., Yang, W.-Z., Corselli, L., Cramton, S.E., Yuan, H.S., and Johnson, R.C. (1997) The transactivation region of the Fis protein that controls site-specific DNA inversion contains extended mobile β-hairpin arms EMBO J 16: 6860-6873.
-
(1997)
EMBO J
, vol.16
, pp. 6860-6873
-
-
Safo, M.K.1
Yang, W.-Z.2
Corselli, L.3
Cramton, S.E.4
Yuan, H.S.5
Johnson, R.C.6
-
43
-
-
0025914242
-
Crystal structure of a CAP-DNA complex: The DNA is bent by 90°
-
Schultz, S.C., Shields, G.C., and Steitz, T.A. (1991) Crystal structure of a CAP-DNA complex: the DNA is bent by 90°. Science 253: 1001-1007.
-
(1991)
Science
, vol.253
, pp. 1001-1007
-
-
Schultz, S.C.1
Shields, G.C.2
Steitz, T.A.3
-
44
-
-
0030832562
-
Relating primary structure to function in the Escherichia coli XerD site-specific recombinase
-
Spiers, A.J., and Sherratt, D.J. (1997) Relating primary structure to function in the Escherichia coli XerD site-specific recombinase. Mol Microbiol 24: 1071-1082.
-
(1997)
Mol Microbiol
, vol.24
, pp. 1071-1082
-
-
Spiers, A.J.1
Sherratt, D.J.2
-
45
-
-
0025789755
-
Bacteriophage-mediated generalized transduction in Escherichia coli and Salmonella typhimurium
-
Sternberg, N.L., and Maurer, R. (1991) Bacteriophage-mediated generalized transduction in Escherichia coli and Salmonella typhimurium. Methods Enzymol 204: 18-43.
-
(1991)
Methods Enzymol
, vol.204
, pp. 18-43
-
-
Sternberg, N.L.1
Maurer, R.2
-
46
-
-
0030817595
-
Crystal structure of the site-specific recombinase, XerD
-
Subramanya, H.S., Arciszewska, L.K., Baker, R.A., Bird, L.E., Sherratt, D.J., and Wigley, D.B. (1997) Crystal structure of the site-specific recombinase, XerD. EMBO J 16: 5178-5187.
-
(1997)
EMBO J
, vol.16
, pp. 5178-5187
-
-
Subramanya, H.S.1
Arciszewska, L.K.2
Baker, R.A.3
Bird, L.E.4
Sherratt, D.J.5
Wigley, D.B.6
-
47
-
-
0022859258
-
Mutations in an integration host factor binding site: Effect on lambda site-specific recombination and regulatory implications
-
Thompson, J.F., Waechter-Brulla, D., Gumport, R.I., Gardner, J.F., Moitoso de Vargas, L., and Landy, A. (1986) Mutations in an integration host factor binding site: effect on lambda site-specific recombination and regulatory implications. J Bacteriol 168: 1343-1351.
-
(1986)
J Bacteriol
, vol.168
, pp. 1343-1351
-
-
Thompson, J.F.1
Waechter-Brulla, D.2
Gumport, R.I.3
Gardner, J.F.4
Moitoso De Vargas, L.5
Landy, A.6
-
48
-
-
0021943518
-
Improved M13 phage cloning vectors and host strains: Nucleotide sequences of the M13mp18 and pUC19 vectors
-
Yanisch-Perron, C., Vieira, J., and Messing, J. (1985) Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33: 103-119.
-
(1985)
Gene
, vol.33
, pp. 103-119
-
-
Yanisch-Perron, C.1
Vieira, J.2
Messing, J.3
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