Structure of the starch-binding domain of Bacillus cereus β-amylase

Journal of Microbiology and Biotechnology

Volumn 9, Issue 5, 1999, Pages 619-623

  Yoon, Hye Jin ^a   Hirata, Akira ^a   Adachi, Motoyasu ^a   Sekine, Atsushi ^a   Utsumi, Shigeru ^a   Mikami, Bunzo ^a  

^a KYOTO UNIVERSITY   (Japan)

Author keywords

amylase; 3D structure; Starch binding domain; X ray crystallography

Indexed keywords

AMINO ACID; BETA AMYLASE; CYCLOMALTODEXTRIN GLUCANOTRANSFERASE; GLUCAN 1,4 ALPHA GLUCOSIDASE; STARCH; WATER;

AMINO ACID SEQUENCE; ARTICLE; BACILLUS CEREUS; BIOTECHNOLOGY; CARBOXY TERMINAL SEQUENCE; ENZYME ACTIVE SITE; ENZYME PURIFICATION; ENZYME STRUCTURE; NONHUMAN; PROTEIN EXPRESSION; PROTEIN SECONDARY STRUCTURE; STRUCTURE ANALYSIS; X RAY CRYSTALLOGRAPHY;

BACILLUS CEREUS; ESCHERICHIA COLI;

EID: 0033377318     PISSN: 10177825     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (25)

1. Thoma, J. A., E. Spradlin, and S. Dygert. 1971. Plant and animal amylases. The Enzymes (3rd ed.) 5: 115-189.
2. Nanmori, T. 1988. Bacterial β-amylase. In: Handbook of Amylases and Related Enzymes (The Amylase Research Society of Japan, ed) pp. 94-99, Pergamon Press, Oxford, U.K.
3. Kawazu, T., Y. Nakanishi, N. Uozuni, T. Sasaki, H. Yamagata, N. Tsukagoshi, and S. Udaka. 1988. Cloning and nucleotide sequence of the gene coding for enzymatically active fragments of the Bacillus polymyxa β-amylase. J. Bacteriol. 169: 1564-1570.
4. Siggens, K. 1987. Molecular cloning and characterization of the β-amylase gene from Bacillus circulans. Mol. Microbiol. 1: 86-91.
5. Kitamoto, N., H. Yamagata, T. Kato, N. Tsukagoshi, and S. Udaka. 1988. Cloning and sequencing of the gene encoding thermophilic β-amylase of Clostridium thermosulfurogenes. J.Bacteriol. 170: 5848-5854.
6. Nanmori, T., M. Nagai, Y. Shimizu, R. Shinke, and B. Mikami. 1993. Cloning of the β-amylase gene from Bacillus cereus and characteristics of the primary structure of the enzyme. Appl. Environ. Microbiol. 59: 623-627.
7. Yamaguchi, T., M. Matsumoto, M. Shirakawa, M. Kibe, T. Hibino, S. Kozaki, Y. Takasaki, and Y. Nitta. 1996. Cloning, sequencing, and expression of a β-amylase gene from Bacillus cereus var. mycoides and characterization of its products. Biosci. Biotechnol. Biochem. 60: 1225-1259.
8. Svensson, B., H. M. Jespersen, M. R. Sierks, and E. A. MacGregor. 1989. Sequence homology between putative raw-starch binding domains from different starch-degrading enzymes. Biochem. J. 264: 309-311.
9. Lawson, C. L., R. Montfort, B. Strokopytov, H. J. Rozeboom, K. H. Kalk, G. E. de Vries, D. Penninga, L. Dijkhuizen, and B. W. Dijkstra. 1994. Nucleotide sequence and X-ray structure of cyclodextrin glycosyltransferase from Bacillus circulans strain 251 in a maltose-dependent crystal form. J. Mol. Biol. 236: 590-600.
10. Knegtel, R. M. A., B. Strokopytov, D. Penninga, O. G. Faber, H. J. Rozeboom, K. H. Halk, L. Dijkhuizen, and B. W. Dijkstra. 1995. Crystallographic studies of the interaction of cyclodextrin glycosyltransferase from Bacillus circulans strain 251 with natural substrates and products. J. Biol. Chem. 270: 29256-29264.
11. Sorimachi, K., M.-F. Le Gal-Coëffet, G. Williamson, D. B. Archer, and M P. Williamson. 1997. Solution structure of the granular starch binding domain of Aspergillus niger glucoamylase bound to β-cyclodextrin. Structure 15: 647-661.
12. Mikami, B., M. Adachi, T. Kage, E. Salikaya, T. Nanmori, R. Shinke, and S. Utsumi. 1999. Structure of raw-starch-digesting Bacillus cereus β-amylase complexed with maltose. Biochemistry 38: 7050-7061.
13. Brünger, A. T. 1992. XPLOR Version 3.1 Manual: A System for Crystallography and NMR, Yale University, New Haven, U.S.A.
14. Luzzati, V. 1952. Traitements statistiques des erreurs dans la determination des structures cristallines. Acta Crystallog. 5: 802-810.
15. Ramakrishnan, C. and G. N. Ramachandran. 1965. Stereochemical criteria for polypeptide and protein chain conformation. Biophys. J. 5: 909-993.
16. Laskowski, R. A., M. W. MacArthur, D. S. Moss, and J. M. Thornton. 1993. PROCHECK: A program to check the Stereochemical quality of protein structures. J. Appl. Crystallog. 26: 283-291.
17. Boel, E., I. Hjort, B. Svensson, F. Norris, K. E. Norris, and N. P. Fill. 1991. Glucoamylase G1 and G2 from Aspergillus niger are synthesized from two different but closely related mRNAs. EMBO J. 3: 1097-1102.
18. Belshaw, N. J. and G. Williamson. 1993. Specificity of the binding domain of glucoamylase 1. Eur. J. Biochem. 211: 717-724.
19. Sigurskjold, B. W., B. Svensson, G. Williamson, and H. Driguez. 1994. Thermodynamics of ligand binding to the starch-binding domain of glucoamylase from Aspergillus niger. Eur. J. Biochem. 225: 133-141.
20. Belshaw, N. J. and G. Williamson. 1991. Interaction of β-cyclodextrin with the granular starch binding domain of glucoamylase. Biochim. Biophys. Acta 1078: 117-120.
21. Gal-Coëffet, M.-F., A. J. Jacks, K. Sorimachi, M. O. Williamson, G. Williamson, and D. B. Archer. 1995. Expression in Aspergillus niger of the starch-binding domain of glucoamylase. Comparison with the proteolytically produced starch-binding domain. Eur. J. Biochem. 233: 561-567.
22. Penninga, D., B. A. van der Veen, R. M. A. Knegtel, S. A. F. T. van Hijum, H. J. Rozeboom, K. H. Kalk, B. W. Dijkatra, and L. Dijkhuizen. 1996. The raw starch binding domain of cyclodextrin glycosyltransferase from Bacillus circulans strain 251. J. Biol. Chem. 271: 32777-32784.
23. Southall, S. M., P. J. Simpson, H. J. Gilbert, G. Williamson, and M. P. Williamson. 1999. The starch-binding domain from glucoamylase disrupts the structure of starch. FEBS Lett. 447: 58-60.
24. Kraulis, P. J. 1991. MOLSCRIPT: A program to produce both detailed and schematic plots of protein structure. J. Appl. Cryst. 24: 946-950.
25. Merritt, E. A. and M. E. P. Murohy. 1994. Raster 3D version 2.0. A program for photorealistic molecular graphics. Acta Crystallog. Sect. D 50: 869-873.