A new approach to separate the genus Photobacterium from Vibrio with RFLP patterns by HhaI digestion of PCR-amplified 16S rDNA

Current Microbiology

Volumn 36, Issue 3, 1998, Pages 171-174

  Urakawa, Hidetoshi ^a   Kita Tsukamoto, Kumiko ^a   Ohwada, Kouichi ^a  

^a UNIVERSITY OF TOKYO   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; RIBOSOME DNA;

ARTICLE; DNA DETERMINATION; GENE AMPLIFICATION; NONHUMAN; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; VIBRIO; VIBRIONACEAE;

DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC; DNA, RIBOSOMAL; GENE AMPLIFICATION; PHOTOBACTERIUM; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RNA, RIBOSOMAL, 16S; VIBRIO;

EID: 0031911140     PISSN: 03438651     EISSN: None     Source Type: Journal    
DOI: 10.1007/PL00006762     Document Type: Article

References (23)

1. Baumann P, Baumann L (1984) Genus II. Photobacterium. In: Krieg NR, Holt JG (eds.) Bergey's manual of systematic bacteriology, vol 1. Baltimore: Williams and Wilkins, pp 539-545
2. Baumann P, Furniss AL, Lee JV (1984) Genus I. Vibrio. In: Krieg NR, Holt JG (eds.) Bergey's manual of systematic bacteriology, vol 1, Baltimore: Williams and Wilkins, pp 518-538
3. Farmer III JJ (1992) The family Vibrionaceae. In: Balows A, Trüper HG, Dworkin M, Harder W, Schleifer K-H (eds) The prokaryotes, a handbook on the biology of bacteria: ecophysiology, isolation, identification, applications, 2nd ed. vol III, New York: Springer-Verlag, pp 2938-2951
4. Farmer III JJ, Hickman-Brenner FW (1992) The genera Vibrio and Photobacterium. In: Balows A, Trüper HG, Dworkin M, Harder W, Schleifer K-H (eds) The prokaryotes, a handbook on the biology of bacteria: ecophysiology, isolation, identification, applications, 2nd ed. vol III, New York: Springer-Verlag, pp 2952-3011
5. Gauthier G, Lafay B, Ruimy R, Breittmayer V, Nicolas JL, Gauthier M, Christen R (1995) Small-subunit rRNA sequences and whole DNA relatedness concur for the reassignment of Pasteurella piscicida (Snieszko et al.) Janssen and Surgalla to the genus Photobacterium as Photobacterium damsela subsp. piscicida comb. nov. Int J Syst Bacteriol 45:139-144
6. Love M, Teebken-Fisher D, Hose JE, Farmer III JJ, Fanning GR (1981) Vibrio damsela, a marine bacterium, causes skin ulcers on the damselfish Chromis punctipinnis. Science 214:1139-1140
7. MacDonell MT, Colwell RR (1985) Phytogeny of the Vibrionaceae and recommendation for two genera, Listonella and Shewanella. Syst Appl Microbiol 6:171-182
8. Mellado E, Moore ERB, Nieto JJ, Ventosa A (1996) Analysis of 16S rRNA gene sequences of Vibrio costicola strains: description of Salinivibrio costicola gen. nov., comb. nov. Int J Syst Bacteriol 46:817-821
9. Nealson KH, Hastings JW (1992) The luminous bacteria. In: Balows A, Trüper HG, Dworkin M, Harder W, Schleifer K-H (eds) The prokaryotes, a handbook on the biology of bacteria: ecophysiology, isolation, identification, applications, 2nd ed. Vol. I. New York: Springer-Verlag, pp 625-639
10. Okuzumi M, Hiraishi A, Kobayashi T, Fujii T (1994) Photobacterium histaminum sp. nov., a histamine-producing marine bacterium. Int J Syst Bacteriol 44:631-636
11. Onarheim AM, Wiik R, Burghardt J, Stackebrandt E (1994) Characterization and identification of two Vibrio species indigenous to the intestine of fish in cold sea water: description of Vibrio iliopiscarius sp. nov. Syst Appl Microbiol 17:370-379
12. Oppenheimer CH, ZoBell CE (1952) The growth and viability of sixty-three species of marine bacteria as influenced by hydrostatic pressure. J Mar Res 11:10-18
13. Orndorff SA, Colwell RR (1980) Distribution and identification of luminous bacteria from the Sargasso Sea. Appl Environ Microbiol 39:983-987
14. Reichelt JL, Baumann P (1973) Taxonomy of the marine, luminous bacteria. Arch. Mikrobiol 94:283-330
15. Ruby EG, Greenberg EP, Hastings JW (1980) Planktonic marine luminous bacteria: species distribution in the water column. Appl Environ Microbiol 39:302-306
16. Ruimy R, Breittmayer V, Elbaze P, Lafay B, Boussemart O, Gauthier M, Christen R (1994) Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences. Int J Syst Bacteriol 44:416-426
17. Simidu U, Tsukamoto K (1985) Habitat segregation and biochemical activities of marine members of the family Vibrionaceae. Appl Environ Microbiol 50:781-790
18. Smith SK, Sutton DC, Fuerst JA, Reichelt JL (1991) Evaluation of the genus Listonella and reassignment of Listonella damsela (Love et al.) MacDonell and Colwell to the genus Photobacterium as Photobacterium damsela comb. nov. with an emended description. Int J Syst Bacteriol 41:529-534
19. Snieszko SF, Bullock GL, Hollis E, Boone JG (1964) Pasteurella sp. from an epizootic of white perch (Roccus americanus) in Chesapeake Bay tidewater areas. J Bacteriol 88:1814-1815
20. Urakawa H, Kita-Tsukamoto K, Ohwada K (1997) 16S rDNA genotyping using PCR/RFLP (restriction fragment length polymorphism) analysis among the family Vibrionaceae. FEMS Microbiol Lett 152:125-132
21. Weisburg WG, Barns SM, Pelletier DA, Lane DJ (1991) 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173:697-703
22. Wiik R, Stackebrandt E, Valle O, Daae FL, Rodseth OM, Andersen K (1995) Classification of fish-pathogenic vibrios based on comparative 16S rRNA analysis. Int J Syst Bacteriol 45:421-428
23. ZoBell CE (1946) Marine Microbiology, Waltham, Mass: Chronica Botanica Co.