Phylogeny of Drosophila and Related Genera: Conflict between Molecular and Anatomical Analyses

Molecular Phylogenetics and Evolution

Volumn 13, Issue 2, 1999, Pages 319-328

  Kwiatowski, Jan ^a,b   Ayala, Francisco J ^b  

^a UNIVERSITY OF WARSAW   (Poland)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Chymomyza; Drosophila; Hawaiian Drosophila; Scaptodrosophila; molecular systematics; Adh; Gpdh; Sod

Indexed keywords

ALCOHOL DEHYDROGENASE; DNA; GLYCEROL 3 PHOSPHATE DEHYDROGENASE; SUPEROXIDE DISMUTASE;

ANIMAL; ARTICLE; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; DROSOPHILA; GENETICS; HISTOLOGY; MOLECULAR EVOLUTION; MOLECULAR GENETICS; PHYLOGENY;

ALCOHOL DEHYDROGENASE; ANIMALS; DNA; DROSOPHILA; EVOLUTION, MOLECULAR; GLYCEROLPHOSPHATE DEHYDROGENASE; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SUPEROXIDE DISMUTASE;

EID: 0033217771     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1006/mpev.1999.0657     Document Type: Article

References (33)

1. Ausubel F. M., Brent R., Kingston R. E., Moore D. D., Smith J. A., Seidman J. G., Struhl K. Current Protocols in Molecular Biology. 1987;Wiley, New York.
2. Ayala F. J., Barrio E., Kwiatowski J. Molecular clock or erratic evolution. Proc. Natl. Acad. Sci. USA. 93:1996;11729-11734.
3. Baker R. H., DeSalle R. Multiple sources of character information and the phylogeny of Hawaiian drosophilids. Syst. Biol. 46:1997;645-673.
4. Brower A. V. Z., DeSalle R., Vogler A. Gene trees, species trees, and systematics: A cladistic perspective. Annu. Rev. Ecol. Syst. 27:1996;423-450.
5. DeSalle R. The origin and possible time of divergence of the Hawaiian Drosophilidae: Evidence from DNA sequences. Mol. Biol. Evol. 9:1992a;905-916.
6. DeSalle R. The phylogenetic relationships of flies in the family Drosophilidae deduced from mtDNA sequences. Mol. Phylogenet. Evol. 1:1992b;31-40.
7. DeSalle R., Giddings L. V. Discordance of nuclear and mitochondrial DNA phylogenies in Hawaiian Drosophila. Proc. Natl. Acad. Sci. USA. 83:1986;6902-6906.
8. DeSalle R., Grimaldi D. Characters and the systematics of Drosophilidae. J. Hered. 83:1992;182-188.
9. Felsenstein J. Evolutionary trees from DNA sequences: A maximum likelihood approach. J. Mol. Evol. 17:1981;368-374.
10. Felsenstein J. PHYLIP - Phylogeny Inference Package (Version 3.2). Cladistics. 5:1989;164-166.
11. Fitch W. M. Toward defining the course of evolution: Minimum change for a specified tree topology. Syst. Zool. 20:1971;406-416.
12. Grimaldi D. A. A phylogenetic, revised classification of the genera in the Drosophilidae (Diptera). Bull. Am. Mus. Nat. Hist. 197:1990;1-139.
13. Kawasaki E. S. Sample preparation from blood, cells, and other fluids. Innis M. A., Gelfand D. H., Sninsky J. J., White T. J. PCR Protocols: A Guide to Methods and Applications. 1990;146-152 Academic Press, San Diego.
14. Kimura M. A simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences. J. Mol. Evol. 16:1980;111-120.
15. Kishino H., Hasegawa M. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. J. Mol. Evol. 29:1989;170-179.
16. Kumar, S, Tamura, K, and, Nei, M. 1993, MEGA: Molecular Evolutionary Genetics Analysis, Version 1.0, Pennsylvania State University, University Park, PA.
17. Kwiatowski J., Skarecky D., Burgos M., Ayala F. J. Structure and sequence of the Cu,Zn superoxide dismutase gene of Chymomyza amoena: Phylogeny of the genus and codon-use evolution. Insect Mol. Biol. 1:1992;3-13.
18. Kwiatowski J., Skarecky D., Bailey K., Ayala F. J. Phylogeny of Drosophila and related genera inferred from the nucleotide sequence of the Cu,Zn Sod gene. J. Mol. Evol. 38:1994;443-454.
19. Kwiatowski J., Krawczyk M., Jaworski M., Skarecky D., Ayala F. J. Erratic evolution of glycerol-3-phosphate dehydrogenase in Drosophila, Chymomyza, and Ceratitis. J. Mol. Evol. 44:1997;9-22.
20. Moore W. S. Inferring phylogenies from mtDNA variations: Mitochondrial-gene trees versus nuclear-gene trees. Evolution. 49:1995;718-726.
21. Pélandakis M., Solignac M. Molecular phylogeny of Drosophila based on ribosomal RNA sequences. J. Mol. Evol. 37:1993;525-543.
22. Powell J. R. Progress and Prospects in Evolutionary Biology: The Drosophila Model. 1997;Oxford Univ. Press, New York.
23. Powell J. R., DeSalle R. Drosophila molecular phylogenies and their uses. Hecht M. K., MacIntire R. J., Clegg M. T. Evolutionary Biology. 1995;87-138 Plenum, New York.
24. Remsen J., DeSalle R. Character congruence of multiple data partitions and the origin of the Hawaiian Drosophilidae. Mol. Phylogenet. Evol. 9:1998;225-235.
25. Russo C. A. M., Takezaki N., Nei M. Molecular phylogeny and divergence times of Drosophilid species. Mol. Biol. Evol. 12:1995;391-404.
26. Saitou N., Nei M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:1987;406-425.
27. Starmer W. T., Sullivan D. T. A shift in the third-codon-position nucleotide frequency in alcohol dehydrogenase genes in the genus Drosophila. Mol. Biol. Evol. 6:1989;546-552.
28. Tatarenkov A., Kwiatowski J., Skarecky D., Barrio E., Ayala F. J. On the evolution of dopa decarboxylase (Ddc) and Drosophila systematics. J. Mol. Evol. 48:1999;445-462.
29. Templeton A. R. Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and apes. Evolution. 37:1983;221-244.
30. Thomas R. H., Hunt J. A. Phylogenetic relationships in Drosophila: A conflict between molecular and morphological data. Mol. Biol. Evol. 10:1993;362-374.
31. Throckmorton L. H. The phylogeny, ecology, and geography of Drosophila. King R. C. Handbook of Genetics. 1975;421-459 Plenum, New York.
32. Wheeler M. R. The Drosophilidae: A taxonomic overview. Ashburner M., Carson H. L., Thompson J. N. Jr. The Genetics and Biology of Drosophila. 1981;1-97 Academic Press, New York.
33. Wheeler M. R. Additions to the catalog of the world's Drosophilidae. Ashburner M., Carson H. L., Thompson J. N. Jr. The Genetics and Biology of Drosophila. 1986;395-409 Academic Press, New York.