Identification of two essential sequence elements in the nonconsensus type II PatpB-290 plastid promoter by using plastid transcription extracts from cultured tobacco BY-2 cells

Plant Cell

Volumn 11, Issue 9, 1999, Pages 1799-1810

  Kapoor, Sanjay ^a,b   Sugiura, Masahiro ^a  

^a NAGOYA UNIVERSITY   (Japan)

^b NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

EMBRYOPHYTA; NICOTIANA TABACUM; PROKARYOTA;

EID: 0033197688     PISSN: 10404651     EISSN: None     Source Type: Journal    
DOI: 10.1105/tpc.11.9.1799     Document Type: Article

References (49)

1. Allison, L.A., Simon, L.D., and Maliga, P. (1996). Deletion of rpoB reveals a second distinct transcription system in plastids of higher plants. EMBO J. 15, 2802-2809.
2. Bartlett, S.G., Grossmann, A.R., and Chua, N.-H. (1982). In vitro synthesis and uptake of cytoplasmically-synthesized chloroplast proteins. In Methods in Chloroplast Molecular Biology, M. Edelman, R.B. Hallick, and N.-H. Chua, eds (New York: Elsevier), pp. 1081-1091.
3. Baumgartner, B.J., Rapp, J.C., and Mullet, J.E. (1993). Plastid genes encoding the transcription/translation apparatus are differentially transcribed early in barley (Hordeum vulgare) chloroplast development. Plant Physiol. 101, 781-791.
4. Bottomley, W., Spencer, D., Wheeler, A.M., and Whitfeld, P.R. (1971). The effect of a range of RNA polymerase inhibitors on RNA synthesis in higher plant chloroplasts and nuclei. Arch. Biochem. Biophys. 143, 269-275.
5. Bülow, S., and Link, G. (1988). Sigma-like activity from mustard (Sinapis alba L.) chloroplast conferring DNA-binding and transcription specificity to E. coli core RNA polymerase. Plant Mol. Biol. 10, 349-357.
6. Bünger, W., and Feierabend, J. (1980). Capacity of RNA synthesis in 70S ribosome-deficient plastids of heat-bleached rye leaves. Planta 149, 163-169.
7. dePamphilis, C.W., and Palmer, J.D. (1990). Loss of photosynthetic and chlororespiratory genes from the plastid genome of a parasitic flowering plant. Nature 348, 337-339.
8. Ems, S., Morden, C.W., Dixon, C., Wolfe, K.H., dePamphilis, C.W., and Palmer, J.D. (1995). Transcription, splicing and editing of plastid RNAs in the nonphotosynthetic plant Epiphagus virginiana. Plant Mol. Biol. 29, 721-733.
9. Falk, J., Schmidt, A., and Krupinska, K. (1993). Characterization of plastid DNA transcription by ribosome of heat-bleached barley leaves. J. Plant Physiol. 141, 176-181.
10. Fan, H., and Sugiura, M. (1995). A plant basal in vitro system supporting accurate transcription of both RNA polymerase II-and III-dependent genes: Supplement of green leaf component(s) drives accurate transcription of a light-responsive rbcS gene. EMBO J. 14, 1024-1031.
11. Gruissem, W., and Tonkyn, J.C. (1993). Control mechanisms of plastid gene expression. Crit. Rev. Plant Sci. 121, 19-55.
12. Hajdukiewicz, P.T., Allison, L.A., and Maliga, P. (1997). The two RNA polymerases encoded by the nuclear and the plastid compartments transcribe distinct groups of genes in tobacco plastids. EMBO J. 16, 4041-4048.
13. Han, C.D., Patrie, W., Polacco, M., and Coe, E.H. (1993). Aberrations in plastid transcripts and deficiency of plastid DNA in striped and albino mutants in maize. Planta 191, 552-563.
14. Hedtke, B., Börner, T., and Weihe, A. (1997). Mitochondrial and chloroplast phage-type RNA polymerases in Arabidopsis. Science 277, 809-811.
15. Hess, W., and Börner, T. (1999). Organellar RNA polymerase of higher plants. Int. Rev. Cytol. 190, 1-59.
16. Hess, W.R., Prombona, A., Fieder, B., Subramanian, A.R., and Börner, T. (1993). Chloroplast rps15 and the rpoB/C1/C2 gene cluster are strongly transcribed in ribosome-deficient plastids: Evidence for a functioning non-chloroplast-encoded RNA polymerase. EMBO J. 12, 563-571.
17. Hübschmann, T., and Börner, T. (1998). Characterization of transcript initiation sites in ribosome-deficient barley plastids. Plant Mol. Biol. 36, 493-496.
18. Igloi, G.L., and Kössel, H. (1992). The transcription apparatus of chloroplasts. Crit. Rev. Plant Sci. 10, 525-558.
19. Kapoor, S., Wakasugi, T., Deno, H., and Sugiura, M. (1994). An atpE-specific promoter within the coding region of the atpB gene in tobacco chloroplast DNA. Curr. Genet. 26, 263-268.
20. Kapoor, S., Suzuki, J.Y., and Sugiura, M. (1997). Identification and functional significance of a new class of non-consensus-type plastid promoters. Plant J. 11, 327-337.
21. Kestermann, M., Neukirchen, S., Kloppstech, K., and Link, G. (1998). Sequence and expression characteristics of a nuclear encoded chloroplast sigma factor from mustard (Sinapis alba). Nucleic Acids Res. 26, 2747-2753.
22. Lerbs, S., Bräutigam, E., and Mache, R. (1983). DNA-dependent RNA polymerase of spinach chloroplasts: Characterization of sigma-like and alpha-like polypeptides. Mol. Gen. Genet. 211, 459-464.
23. Lerbs, S., Bräutigam, E., and Parthier, B. (1985). Polypeptides in DNA-dependent RNA polymerase of spinach chloroplasts: Characterization by anti-body-linked polymerase assay and determination of sites of synthesis. EMBO J. 4, 1661-1666.
24. Lerbs-Mache, S. (1993). The 110-kDa polypeptide of spinach plastid DNA-dependent RNA polymerase: Single-subunit enzyme or catalytic core of multimeric enzyme complexes? Proc. Natl. Acad. Sci. USA 90, 5509-5513.
25. Liere, K., and Maliga, P. (1999). In vitro characterization of the tobacco rpoB promoter reveals a core sequence motif conserved between phage-type plastid and mitochondrial promoters. EMBO J. 18, 249-257.
26. Link, G. (1994). Plastid differentiation: Organelle promoters and transcription factors. Results Probl. Cell Differ. 20, 65-85.
27. Miyagi, T., Kapoor, S., Sugita, M., and Sugiura, M. (1998). Transcript analysis of the tobacco plastid operon rps2/atpl/H/F/A reveals the existence of a non-consensus type II (NCII) promoter upstream of the atpl coding sequence. Mol. Gen. Genet. 257, 299-307.
28. Morden, C.W., Wolfe, K.H., dePamphilis, C.W., and Palmer, J.D. (1991). Plastid translation and transcription genes in a non-photosynthetic plant: Intact, missing and pseudo genes. EMBO J. 10, 3281-3288.
29. Nagata, T., Okada, K., Takebe, I., and Mitsui, C. (1981). Delivery of tobacco mosaic virus RNA into plant protoplasts mediated by reverse-phase evaporation vesicles (liposomes). Mol. Gen. Genet. 184, 161-165.
30. Nemoto, Y., Kawano, S., Nakamura, S., Mita, T., Nagata, T., and Kuroiwa, T. (1988). Studies on plastid-nuclei (nucleoids) in Nicotiana tabacum L. I. Isolation of proplastid-nuclei from cultured cells and identification of proplastid-nuclear proteins. Plant Cell Physiol. 29, 167-177.
31. Orii, Y., and Okunuki, K. (1965). Cytochrome oxidase activity of the Okunuki preparation and its activation by heat, alkali and detergent treatments. J. Biochem. 58, 561-568.
32. Orozco, E.M., Jr., Mullet, J.E., Hanley-Bowdoin, L., and Chua, N.-H. (1986). In vitro transcription of chloroplast protein genes. Methods Enzymol. 118, 232-253.
33. Orozco, E.M., Jr., Chen, L.J., and Eilers, R.J. (1990). The divergently transcribed rbcL and atpB genes of tobacco plastid DNA are separated by nineteen base pairs. Curr. Genet. 17, 65-71.
34. Sambrook, J., Fritsch, E.F., and Manniatis, T. (1989). Molecular Cloning: A Laboratory Mannual, 2nd ed. (Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press).
35. Serino, G., and Maliga, P. (1998). RNA polymerase subunits encoded by the plastid rpo genes are not shared with the nucleus-encoded plastid enzyme. Plant Physiol. 117, 1165-1170.
36. Siemenroth, A., Wollgiehn, R., Neumann, D., and Börner, T. (1981). Synthesis of ribosomal RNA in ribosome-deficient plastids of the mutant "albostrians" of Hordeum vulgare L. Planta 153, 547-555.
37. Silhavy, D., and Maliga, P. (1998). Mapping of promoters for the nucleus-encoded plastid RNA polymerase (NEP) in the iojap maize mutant. Curr. Genet. 33, 340-344.
38. Sriraman, P., Silhavy, D., and Maliga, P. (1998). The phage-type PclpP-53 plastid promoter comprises sequences downstream of the transcription initiation site. Nucleic Acids Res. 26, 4874-4879.
39. Sugiura, M., Shinozaki, K., Zaita, N., Kusuda, J., and Kumano, M. (1986). Clone bank of the tobacco (Nicotiana tabacum) chloroplast genome as a set of overlapping restriction endonuclease fragments: Mapping of eleven ribosomal protein genes. Plant Sci. 44, 211-216.
40. Sun, E., Shapiro, D.R., Wu, B.W., and Tewari, K.K. (1986). Specific in vitro transcription of 16S rRNA gene by pea chloroplast RNA polymerase. Plant Mol. Biol. 6, 429-439.
41. Sun, E., Wu, B.W., and Tewari, K.K. (1989). In vitro analysis of the pea chloroplast 16S rRNA gene promoter. Mol. Cell. Biol. 9, 5650-5659.
42. Tanaka, K., Tozawa, Y., Mochizuki, N., Shinozaki, K., Nagatani, A., Wakasa, K., and Takahashi, H. (1997). Characterization of three cDNA species encoding plastid RNA polymerase sigma factors in Arabidopsis thaliana: Evidence for the sigma factor heterogeneity in higher plant plastids. FEBS Lett. 413, 309-313.
43. Tiller, K., and Link, G. (1993), Phosphorylation and dephosphorylation affect functional characteristics of chloroplast and etioplast transcription systems from mustard (Sinapis alba L.). EMBO J. 12, 1745-1753.
44. Tiller, K., and Link, G. (1995). Sigma-like plastid transcription factors. Methods Mol. Biol. 37, 337-348.
45. Tiller, K., Eisermann, A., and Link, G. (1991). The chloroplast transcription apparatus from mustard (Sinapis alba L.). Evidence for three different transcription factors which resemble bacterial sigma factors. Eur. J. Biochem. 198, 93-99.
46. Tozawa, Y., Tanaka, K., Takahashi, H., and Wakasa, K. (1998). Nuclear encoding of a plastid sigma factor in rice and its tissue-and light-dependent expression. Nucleic Acids Res. 26, 415-419.
47. Troxler, R.F., Zhang, F., Hu, J., and Bogorad, L. (1994). Evidence that sigma factors are components of chloroplast RNA polymerase. Plant Physiol. 104, 753-759.
48. Vera, A., and Sugiura, M. (1995). Chloroplast rRNA transcription from structurally different tandem promoters: An additional novel-type promoter. Curr. Genet. 27, 280-284.
49. Vera, A., Hirose, T., and Sugiura, M. (1996). A ribosomal protein gene (rpl32) from tobacco chloroplast DNA is transcribed from alternative promoters: Similarities in promoter region organization in plastid housekeeping genes. Mol. Gen. Genet. 251, 518-525.