-
1
-
-
0024362070
-
On the attribution of binding energy in antigen-antibody complexes McPC 603, D1.3, and HyHEL-5
-
Novotny, J., Bruccoleri, R.E., Saul, F.A. On the attribution of binding energy in antigen-antibody complexes McPC 603, D1.3, and HyHEL-5. Biochemistry 28:4735-4749, 1989.
-
(1989)
Biochemistry
, vol.28
, pp. 4735-4749
-
-
Novotny, J.1
Bruccoleri, R.E.2
Saul, F.A.3
-
2
-
-
0027087369
-
Calculation of the free energy of association for protein complexes
-
Horton, N., Mitchell, L. Calculation of the free energy of association for protein complexes. Protein Sci. 1:169-181, 1992.
-
(1992)
Protein Sci.
, vol.1
, pp. 169-181
-
-
Horton, N.1
Mitchell, L.2
-
3
-
-
0027321958
-
Absolute and relative binding free energy calculations of the interaction of biotin and its analogs with streptavidin using molecular dynamics free energy perturbation approaches
-
Miyamoto, S., Kollman, P.A. Absolute and relative binding free energy calculations of the interaction of biotin and its analogs with streptavidin using molecular dynamics free energy perturbation approaches. Proteins 16:226-245, 1993.
-
(1993)
Proteins
, vol.16
, pp. 226-245
-
-
Miyamoto, S.1
Kollman, P.A.2
-
4
-
-
0001016942
-
Structure-based molecular design
-
Kuntz, D.I., Meng, E.C., Shoichet, B.K. Structure-based molecular design. Accounts Chem. Res. 27:117-123, 1994.
-
(1994)
Accounts Chem. Res.
, vol.27
, pp. 117-123
-
-
Kuntz, D.I.1
Meng, E.C.2
Shoichet, B.K.3
-
5
-
-
0022596727
-
Solvation energy in protein folding and binding
-
Eisenberg, D., McLachlan, A.D. Solvation energy in protein folding and binding. Nature 319:199-203, 1986.
-
(1986)
Nature
, vol.319
, pp. 199-203
-
-
Eisenberg, D.1
McLachlan, A.D.2
-
6
-
-
0026076664
-
Extracting hydrophobic free energies from experimental data: Relationship to protein folding and theoretical models
-
Sharp, K.A., Nicholls, A., Fine, R.F., Honig, B. Extracting hydrophobic free energies from experimental data: Relationship to protein folding and theoretical models. Biochemistry 30:9686-9697, 1991.
-
(1991)
Biochemistry
, vol.30
, pp. 9686-9697
-
-
Sharp, K.A.1
Nicholls, A.2
Fine, R.F.3
Honig, B.4
-
8
-
-
0027991081
-
Estimation of changes in side chain configurational entropy in binding and folding: General methods and application to helix formation
-
Lee, K.H., Xie, D., Freire, E., Amzel, L.M. Estimation of changes in side chain configurational entropy in binding and folding: General methods and application to helix formation. Proteins Struct. Func. Genet. 20:68-84, 1994.
-
(1994)
Proteins Struct. Func. Genet.
, vol.20
, pp. 68-84
-
-
Lee, K.H.1
Xie, D.2
Freire, E.3
Amzel, L.M.4
-
9
-
-
0029094346
-
Enthalpic contributions to protein stability: Atom-based calculations and statistical mechanics
-
Lazaridis, T., Archontis, G., Karplus, M. Enthalpic contributions to protein stability: atom-based calculations and statistical mechanics. Adv. Protein Chem. 47:231-306, 1995.
-
(1995)
Adv. Protein Chem.
, vol.47
, pp. 231-306
-
-
Lazaridis, T.1
Archontis, G.2
Karplus, M.3
-
10
-
-
0026649261
-
The molecular basis of co-operativity in protein folding III: Identification of cooperative folding units and folding intermediates
-
Murphy, K.P., Bhakuni, V., Xie, D., Freire, E. The molecular basis of co-operativity in protein folding III: Identification of cooperative folding units and folding intermediates. J. Mol. Biol. 227:293-306, 1992.
-
(1992)
J. Mol. Biol.
, vol.227
, pp. 293-306
-
-
Murphy, K.P.1
Bhakuni, V.2
Xie, D.3
Freire, E.4
-
11
-
-
0028146012
-
Structure based prediction of protein folding intermediates
-
Xie, D., Freire, E. Structure based prediction of protein folding intermediates. J. Mol. Biol. 242:62-80, 1994.
-
(1994)
J. Mol. Biol.
, vol.242
, pp. 62-80
-
-
Xie, D.1
Freire, E.2
-
12
-
-
0027980359
-
Molecular basis of cooperativity in protein folding. V. thermodynamic and structural conditions for the stabilization of compact denatured states
-
Xie, D., Freire, E. Molecular basis of cooperativity in protein folding. V. thermodynamic and structural conditions for the stabilization of compact denatured states. Proteins Struct. Func. Genet. 19:291-301, 1994.
-
(1994)
Proteins Struct. Func. Genet.
, vol.19
, pp. 291-301
-
-
Xie, D.1
Freire, E.2
-
13
-
-
0027349239
-
Hydration and heat stability effects on protein unfolding
-
Oobatake, M., Ooi, T. Hydration and heat stability effects on protein unfolding. Prog. Biophys. Mol. Biol. 59:237-284, 1992.
-
(1992)
Prog. Biophys. Mol. Biol.
, vol.59
, pp. 237-284
-
-
Oobatake, M.1
Ooi, T.2
-
14
-
-
0027305948
-
Contribution of hydration to protein folding thermodynamics. I. The enthalpy of hydration
-
Makhatadze, G.I., Privalov, P.L. Contribution of hydration to protein folding thermodynamics. I. The enthalpy of hydration. J. Mol. Biol. 232:639-659, 1993.
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 639-659
-
-
Makhatadze, G.I.1
Privalov, P.L.2
-
15
-
-
0027250627
-
Contribution of hydration to protein folding thermodynamics. II. The entropy and Gibbs energy of hydration
-
Makhatadze, G.I., Privalov, P.L. Contribution of hydration to protein folding thermodynamics. II. The entropy and Gibbs energy of hydration. J. Mol. Biol. 232:660-679, 1993.
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 660-679
-
-
Makhatadze, G.I.1
Privalov, P.L.2
-
17
-
-
0029080864
-
Thermodynamic mapping of the inhibitor site of the aspartic protease endothiapepsin
-
Gomez, J., Freire, E. Thermodynamic mapping of the inhibitor site of the aspartic protease endothiapepsin. J. Mol. Biol. 252:337-350, 1995.
-
(1995)
J. Mol. Biol.
, vol.252
, pp. 337-350
-
-
Gomez, J.1
Freire, E.2
-
18
-
-
0028577248
-
Thermodynamic characterization of a staphylococcal nuclease folding intermediate
-
Xie, D., Fox, R., Freire, E. Thermodynamic characterization of a staphylococcal nuclease folding intermediate. Protein Sci. 3:2175-2184, 1994.
-
(1994)
Protein Sci.
, vol.3
, pp. 2175-2184
-
-
Xie, D.1
Fox, R.2
Freire, E.3
-
19
-
-
0029132790
-
Thermodynamics of partly folded intermediates in proteins
-
Freire, E. Thermodynamics of partly folded intermediates in proteins. Ann. rev. of Biophys. Biomol. Struct. 24:141-165, 1995.
-
(1995)
Ann. Rev. of Biophys. Biomol. Struct.
, vol.24
, pp. 141-165
-
-
Freire, E.1
-
20
-
-
0029157132
-
The unfolding thermodynamics of c-type lysozymes: A calorimetric study of the heat denaturation of equine lysozyme
-
Griko, Y.V., Freire, E., Privalov, G., Van Dael, H., Privalov, P.L. The unfolding thermodynamics of c-type lysozymes: A calorimetric study of the heat denaturation of equine lysozyme. J. Mol. Biol. 252:447-459, 1995.
-
(1995)
J. Mol. Biol.
, vol.252
, pp. 447-459
-
-
Griko, Y.V.1
Freire, E.2
Privalov, G.3
Van Dael, H.4
Privalov, P.L.5
-
21
-
-
84986512474
-
CHARMM: A program for macromolecular energy, minimization and dynamics calculations
-
Brooks, B.R., Bruccoleri, R.E., Olafson, B.D., States, D.J., Swaminathan, S., Karplus, M. CHARMM: A program for macromolecular energy, minimization and dynamics calculations. J. Computat. Chem. 4:187-217, 1983.
-
(1983)
J. Computat. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
22
-
-
0015972151
-
Energy refinement of hen egg-white lysozyme
-
Levitt, M. Energy refinement of hen egg-white lysozyme. J. Mol. Biol. 82:393-420, 1974.
-
(1974)
J. Mol. Biol.
, vol.82
, pp. 393-420
-
-
Levitt, M.1
-
23
-
-
0026344361
-
Solid model compounds and the thermodynamics of protein unfolding
-
Murphy, K.P., Gill, S.J. Solid model compounds and the thermodynamics of protein unfolding. J. Mol. Biol. 222: 699-709, 1991.
-
(1991)
J. Mol. Biol.
, vol.222
, pp. 699-709
-
-
Murphy, K.P.1
Gill, S.J.2
-
24
-
-
0028085986
-
Hydration and convergence temperatures: On the use and interpretation of correlation plots
-
Murphy, K.P. Hydration and convergence temperatures: On the use and interpretation of correlation plots. Biophys. Chem. 51:311-326, 1994.
-
(1994)
Biophys. Chem.
, vol.51
, pp. 311-326
-
-
Murphy, K.P.1
-
25
-
-
10344239520
-
The magnitude of the backbone conformational entropy change in protein folding
-
In Press
-
DAquino, J.A., Gómez, J., Hilser, V.J., Lee, K.H., Amzel, L.M., Freire, E. The magnitude of the backbone conformational entropy change in protein folding. Proteins. In Press: 1995.
-
(1995)
Proteins
-
-
DAquino, J.A.1
Gómez, J.2
Hilser, V.J.3
Lee, K.H.4
Amzel, L.M.5
Freire, E.6
-
26
-
-
0026684671
-
Use of liquid hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding from the removal of nonpolar and polar surface from water
-
Spolar, R.S., Livingstone, J.R., Record, M.T. Jr. Use of liquid hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding from the removal of nonpolar and polar surface from water. Biochemistry 31:3947-3955, 1992.
-
(1992)
Biochemistry
, vol.31
, pp. 3947-3955
-
-
Spolar, R.S.1
Livingstone, J.R.2
Record Jr., M.T.3
-
27
-
-
9944232242
-
Group contributions to the thermodynamie properties of non-ionic organic solutes in dilute aqueous solution
-
Cabani, S., Gianni, P., Mollica, V., Lepori, L. Group contributions to the thermodynamie properties of non-ionic organic solutes in dilute aqueous solution. J. Solution Chem. 10:563-595, 1981.
-
(1981)
J. Solution Chem.
, vol.10
, pp. 563-595
-
-
Cabani, S.1
Gianni, P.2
Mollica, V.3
Lepori, L.4
-
28
-
-
0028956914
-
Thermodynamics of antigen-antibody binding using specific anti-lysozyme antibodies
-
Schwarz, F.P., Tello, D., Goldbaum, F.A., Mariuzza, R.A., Poljak, R.J. Thermodynamics of antigen-antibody binding using specific anti-lysozyme antibodies. Eur. J. Biochem. 228:388-394, 1995.
-
(1995)
Eur. J. Biochem.
, vol.228
, pp. 388-394
-
-
Schwarz, F.P.1
Tello, D.2
Goldbaum, F.A.3
Mariuzza, R.A.4
Poljak, R.J.5
-
29
-
-
0028074974
-
Protein-protein recognition: Crystal structure of a barnase-barstar complex at 2.0 Å resolution
-
Buckle, A.M., Schreiber, G., Fersht, A.R. Protein-protein recognition: Crystal structure of a barnase-barstar complex at 2.0 Å resolution. Biochemistry 33:8878-8889, 1994.
-
(1994)
Biochemistry
, vol.33
, pp. 8878-8889
-
-
Buckle, A.M.1
Schreiber, G.2
Fersht, A.R.3
-
30
-
-
0025007598
-
High-resolution three-dimensional structure of horse heart cytochrome c
-
Bushnell, G.W., Louie, G.V., Brayer, G.D. High-resolution three-dimensional structure of horse heart cytochrome c. J. Mol. Biol. 214:585-595, 1990.
-
(1990)
J. Mol. Biol.
, vol.214
, pp. 585-595
-
-
Bushnell, G.W.1
Louie, G.V.2
Brayer, G.D.3
-
31
-
-
0001874523
-
Calorimetric investigation of lysozyme thermal denaturation
-
Khechinashvili, N.N., Privalov, P.L., Tiktopulo, E.I. Calorimetric investigation of lysozyme thermal denaturation. FEBS Lett. 30:57-60, 1973.
-
(1973)
FEBS Lett.
, vol.30
, pp. 57-60
-
-
Khechinashvili, N.N.1
Privalov, P.L.2
Tiktopulo, E.I.3
-
32
-
-
0028297113
-
A calorimetric study of the thermal stability of barnase and its interaction with 3′GMP
-
Martinez, J.C., Harrous, M.E., Filimonov, V.V., Mateo, P.I., and Fersht, A.R. A calorimetric study of the thermal stability of barnase and its interaction with 3′GMP. Biochemistry 33:3919-3926, 1994.
-
(1994)
Biochemistry
, vol.33
, pp. 3919-3926
-
-
Martinez, J.C.1
Harrous, M.E.2
Filimonov, V.V.3
Mateo, P.I.4
Fersht, A.R.5
-
33
-
-
0028174361
-
Energetics of the alpha-lactalbumin states: A calorimetric and statistical thermodynamic study
-
Griko, Y., Freire, E. and Privalov, P.L. Energetics of the alpha-lactalbumin states: A calorimetric and statistical thermodynamic study. Biochemistry 33:1889-1899, 1994.
-
(1994)
Biochemistry
, vol.33
, pp. 1889-1899
-
-
Griko, Y.1
Freire, E.2
Privalov, P.L.3
-
34
-
-
0015910765
-
Calorimetric investigation of ribonuclease thermal denaturation
-
Privalov, P.L., Tiktopulo, E.I., Khechinashvili, N.N. Calorimetric investigation of ribonuclease thermal denaturation. Int. J. Pept. Protein Res. 5:229-237, 1973.
-
(1973)
Int. J. Pept. Protein Res.
, vol.5
, pp. 229-237
-
-
Privalov, P.L.1
Tiktopulo, E.I.2
Khechinashvili, N.N.3
-
35
-
-
0026726191
-
On the origin of enthalpy and entropy convergence temperatures in protein folding
-
Fu, L., Freire, E. On the origin of enthalpy and entropy convergence temperatures in protein folding. Proc. Natl. Acad. Sci. U.S.A. 89:9335-9338, 1992.
-
(1992)
Proc. Natl. Acad. Sci. U.S.A.
, vol.89
, pp. 9335-9338
-
-
Fu, L.1
Freire, E.2
-
36
-
-
0022747674
-
Microcalorimetric study of heat denaturation of carbonic anhydrase B
-
Tatunashvili, L.V., Privalov, P.L. Microcalorimetric study of heat denaturation of carbonic anhydrase B. Biofizika 31:578-581, 1986.
-
(1986)
Biofizika
, vol.31
, pp. 578-581
-
-
Tatunashvili, L.V.1
Privalov, P.L.2
-
37
-
-
0016230679
-
Calorimetric investigation of the conformational conversions of alpha-chymotrypsin
-
Tischenko, V.M., Tiktopulo, E.I., Privalov, P.L. Calorimetric investigation of the conformational conversions of alpha-chymotrypsin. Biofizika 19:400-404, 1974.
-
(1974)
Biofizika
, vol.19
, pp. 400-404
-
-
Tischenko, V.M.1
Tiktopulo, E.I.2
Privalov, P.L.3
-
38
-
-
0017819511
-
Papain denaturation is not a two-state transition
-
Tiktopulo, E.I., Privalov, P.L. Papain denaturation is not a two-state transition. FEBS Lett. 91:57-58, 1978.
-
(1978)
FEBS Lett.
, vol.91
, pp. 57-58
-
-
Tiktopulo, E.I.1
Privalov, P.L.2
-
39
-
-
0018449366
-
Calorimetric investigation of thermal denaturation of beta-trypsin
-
Tischenko, V.M., Gorodnov, B.G. Calorimetric investigation of thermal denaturation of beta-trypsin. Biofizika. 24: 334-335, 1979.
-
(1979)
Biofizika
, vol.24
, pp. 334-335
-
-
Tischenko, V.M.1
Gorodnov, B.G.2
|