Spermine inhibition of the 2,5-diaziridinyl-1,4-benzoquinone (DZQ) crosslinking reaction with DNA duplexes containing poly(purine)·poly(pyrimidine) tracts

Nucleic Acids Research

Volumn 27, Issue 13, 1999, Pages 2601-2609

  Shamma, Tatyana ^a   Haworth, Ian S ^a  

^a UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BENZOQUINONE; DOUBLE STRANDED DNA; GUANOSINE; SPERMINE;

ARTICLE; COMPUTER SIMULATION; DNA CROSS LINKING; DNA SEQUENCE; PRIORITY JOURNAL;

AZIRIDINES; BENZOQUINONES; CROSS-LINKING REAGENTS; DNA; PURINES; PYRIMIDINES; SPERMINE;

EID: 0033168102     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/27.13.2601     Document Type: Article

References (49)

1. Tabor,C.W. and Tabor,H. (1984) Annu. Rev. Biochem., 53, 749-790.
2. Goldemberg,S.H. and Algranati,I.D. (eds) (1989) The Biology and Chemistry of Polyamines, ICSU Symposium Series, Vol. 12.
3. McCann,P.P., Pegg,A.E. and Sjoerdsma,A. (1987) Inhibition of Polyamine Metabolism. Academic Press, Orlando, FL.
4. Poulin,R., Wechter,R.S. and Pegg,A.E. (1991) J. Biol. Chem., 266, 6142-6151.
5. Bergeron,R.J., Weimar,W.R., Muller,R., Zimmerman,C.O., McCosar,B.H., Yao,H. and Smith,R.E. (1998) J. Med. Chem., 41, 3901-3908.
6. Koza,R.A. and Herbst,E.J. (1992) Biochem. J., 281, 87-93.
7. Basu,H.S., Smirnov,I.V., Peng,H.F., Tiffany,K. and Jackson,V. (1997) Eur. J. Biochem., 243, 247-258.
8. Rodger,A., Taylor,S., Adlam,G., Blagbrough,I.S. and Haworth,I.S. (1995) Bioorg. Med. Chem., 3, 861-872.
9. Oller,A.R., Vanden Broek,W., Conrad,M. and Topal,M. (1991) Biochemistry, 30, 2543-2549.
10. Thomas,T. and Kiang,D.T. (1988) Nucleic Acids Res., 16, 4705-4720.
11. Panagiotidis,C.A., Artandi,S., Calame,K. and Silverstein,S.J. (1995) Nucleic Acids Res., 23, 1800-1809.
12. Wei,T.-F., Bujalowski,W. and Lohman,T.M. (1992) Biochemistry, 31, 6166-6174.
13. Ruiz-Herrera,J., Ruiz-Medrano,R. and Dominguez,A. (1995) FEBS Lett., 357, 192-196.
14. Garriga,P., Garcia-Quintana,D., Sagi,J. and Manyosa,J. (1993) Biochemistry, 32, 1067-1071.
15. Musso,M., Thomas,T., Shirahata,A., Sigal,L.H., Van Dyke,M.W. and Thomas,T.J. (1997) Biochemistry, 36, 1441-1449.
16. Musso,M. and Van Dyke,M.W. (1995) Nucleic Acids Res., 23, 2320-2327.
17. Hampel,K.J., Crosson,P. and Lee,J.S. (1991) Biochemistry, 30, 4455-4459.
18. Thomas,T.J., Gunnia,U.B. and Thomas,T. (1991) J. Biol. Chem., 266, 6137-6141.
19. Basu,H.S., Schwietert,H.C.A., Feuerstein,B.G. and Marton,L.J. (1990) Biochem J., 269, 329-334.
20. Behe,M. and Felsenfeld,G. (1981) Proc. Natl Acad. Sci. USA, 78, 1619-1623.
21. Flock,S., Labarbe,R. and Houssier,C. (1996) Biophys. J., 70, 1456-1465.
22. Smirnov,I.V., Dimitrov,S.I. and Makarov,V.L. (1988) J. Biomol. Struct. Dyn., 5, 1149-1161.
23. Hougaard,D.M., Bolund,L., Fujiwara,K. and Larsson,L.-I. (1987) Eur. J. Cell Biol., 44, 151-155.
24. Wilson,R.W. and Bloomfield,V.A. (1979) Biochemistry, 18, 2192-2196.
25. Bloomfield,V.A. (1997) Biopolymers, 44, 269-282.
26. Haworth,I.S., Rodger,A. and Richards,W.G. (1991) Proc. R. Soc. Lond. B, 244, 107-116.
27. Feuerstein,B.G., Pattabiraman,N. and Marton,L.J. (1990) Nucleic Acids Res., 18, 1271-1282.
28. Feuerstein,B.G., Pattabiraman,N. and Marton,L.J. (1989) Nucleic Acids Res., 17, 6883-6892.
29. Zakrzewska,K. and Pullman,B. (1986) Biopolymers, 25, 375-392.
30. Yuki,M., Grukhin,V., Lee,C.-S. and Haworth,I.S. (1996) Arch. Biochem. Biophys., 325, 39-46.
31. Schmid,N. and Behr,J.-P. (1991) Biochemistry, 30, 4357-4361.
32. Marquet,R. and Houssier,C. (1988) J. Biomol. Struct. Dyn., 6, 235-246.
33. Wemmer,D.E., Srivenugopal,K.S., Reid,B.R. and Morris,D.R. (1985) J. Mol. Biol., 185, 457-459.
34. Padmanabhan,S., Brushaber,V.M., Anderson,C.F. and Record,M.T.,Jr (1991) Biochemistry, 30, 7550-7559.
35. Tari,L.W. and Secco,A.S. (1995) Nucleic Acids Res., 23, 2065-2073.
36. Drew,H.R. and Dickerson,R.E. (1981) J. Mol. Biol., 151, 535-556.
37. Jain,S., Zon,G. and Sundaralingam,M. (1989) Biochemistry, 28, 2360-2364.
38. Verdaguer,N., Aymami,J., Fernández-Forner,D., Fita,I., Coll,M., Huynh-Dinh,T., Igolen,J. and Subirana,J.A. (1991) J. Mol. Biol., 221, 623-635.
39. Tippin,D.B. and Sundaralingam,M. (1997) J. Mol. Biol., 267, 1171-1185.
40. Bancroft,D., Williams,L.D., Rich,A. and Egli,M. (1994) Biochemistry, 33, 1073-1086.
41. Williams,L.D., Fredrick,C.A., Ughetto,G. and Rich,A. (1990) Nucleic Acids Res., 18, 5533-5541.
42. Haworth,I.S., Lee,C.-S., Yuki,M. and Gibson,N.W. (1993) Biochemistry, 32, 12857-12863.
43. Lee,C.-S., Hartley,J.A., Berardini,M., Butler,J., Siegel,D., Ross,D. and Gibson,N.W. (1992) Biochemistry, 31, 3019-3025.
44. Hartley,J.A., Berardini,M., Ponti,M., Gibson,N.W., Thompson,A.S., Thurston,D.E., Hoey,B.M. and Butler,J. (1991) Biochemistry, 30, 11719-11724.
45. Pearlman,D.A., Case,D.A., Caldwell,J.C., Seibel,G.L., Singh,U.C., Weiner,P. and Kollman,P.A. (1991) AMBER 4.0. University of California, San Francisco, CA.
46. Molecular Simulations Inc. (1994) QUANTA Version 4.0. Molecular Simulations Inc., Burlington, MA.
47. Braunlin,W.H., Strick,T.J. and Record,M.T.,Jr (1982) Biopolymers, 21, 1301-1314.
48. Olmsted,M.C., Anderson,C.F. and Record,M.T.,Jr (1989) Proc. Natl Acad. Sci. USA, 86, 7766-7770.
49. Todd,A.K., Adams,A., Thorpe,J.H., Denny,W.A., Wakelin,L.P.G. and Cardin,C.J. (1999) J. Med. Chem., 42, 536-540.