Thermodynamic criterion for the conformation of P1 residues of substrates and of inhibitors in complexes with serine proteinases

Biochemistry

Volumn 38, Issue 22, 1999, Pages 7142-7150

  Qasim, M A ^a   Lu, Stephen M ^a   Ding, Jinhui ^a   Bateman, Katherine S ^a   James, Michael N G ^a   Anderson, Stephen ^a   Song, Jikui ^a   Markley, John L ^a   Ganz, Philip J ^a   Saunders, Charles W ^a   Laskowski Jr , Michael ^a  

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE; CHYMOTRYPSIN; SERINE PROTEINASE; SERINE PROTEINASE INHIBITOR;

ARTICLE; CONFORMATIONAL TRANSITION; CONTROLLED STUDY; ENZYME ACTIVATION; ENZYME INHIBITION; ENZYME STRUCTURE; ENZYME SUBSTRATE COMPLEX; PRIORITY JOURNAL; THERMODYNAMICS; X RAY CRYSTALLOGRAPHY;

BOVINAE; FELIS CATUS;

EID: 0033153266     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi990265u     Document Type: Article

References (40)

1. Laskowski, M., Jr., and Kato, I. (1980) Annu. Rev. Biochem. 49, 593-626.
2. Bode, W., and Huber, R. (1992) Eur. J. Biochem. 204, 433-451.
3. Rühlmann, A., Schramn, H. J., Kukla, D., and Huber, R. (1971) Cold Spring Harbor Symp. Quant. Biol. 36, 148-150.
4. Read, R. J., and James, M. N. G. (1986) Introduction to the protein inhibitors: X-ray crystallography, in Proteinase Inhibitors (Barrett, A. J., and Salvesen, G., Eds.) pp 301-336, Elsevier, Amsterdam.
5. Finkenstadt, W. R., and Laskowski, M., Jr. (1965) J. Biol. Chem. 240, PC962-PC963.
6. Finkenstadt, W. R., and Laskowski, M., Jr. (1967) J. Biol. Chem. 212, 771-772.
7. Ozawa, K., and Laskowski, M., Jr. (1966) J. Biol. Chem. 241, 3955-3961.
8. Luthy, J. A., Praissman, M., Finkenstadt, W. R., and Laskowski, M., Jr. (1973) J. Biol. Chem. 248, 1760-1771.
9. Finkenstadt, W. R., Hamid, M. A., Mattis, J. A., Schrode, J., Sealock, R. W., Wang, D., and Laskowski, M., Jr. (1974) Kinetics and thermodynamics of the interaction of proteinases with protein inhibitors, in Proteinase inhibitors. Proceedings of Bayer Symposium V (Fritz, H., Tschesche, H., Greene, L. J., and Truscheit, E., Eds.) pp 389-411, Springer-Verlag, Berlin.
10. Laskowski, M., Jr., Finkenstadt, W. R., Mattis, J. A., and McKee, R. E. (1976) Thermodynamics and kinetics of the interaction of trypsin with trypsin inhibitors, in XXIIIrd Annual colloquium, Protides of the biological fluids, pp 85-91, Brugge, Belgium.
11. Hubbard, S. J., Campbell, S. F., and Thornton, J. M. (1991) J. Mol Biol. 220, 507-530.
12. Hedstrom, L., Szilagyi, L., and Rutter, W. J. (1992) Science 255, 1249-1253.
13. Perona, J. J., Tsu, C. A., Craik, C. S., and Fletterick, R. J. (1993) J. Mol. Biol. 230, 919-933.
14. Capasso, C., Rizzi, M., Menegatti, E., Ascenzi, P., and Bolognesi, M. (1997) J. Mol. Recognit. 10, 26-35.
15. Scheidig, A. J., Hynes, T. R., Pelletier, L. A., Wells, J. A., and Kossiakoff, A. A. (1997) Protein Sci. 6, 1806-1824.
16. Fujinaga, M., Sielecki, A. R., Read, R. J., Ardelt, W., Laskowski, M., Jr., and James, M. N. G. (1987) J. Mol. Biol. 195, 397-418.
17. Qasim, M. A., Ganz, P. J., Saunders, C. W., Bateman, K. S., James, M. N. G., and Laskowski, M., Jr. (1997) Biochemistry 36, 1598-1607.
18. Lu, W. (1994) Energetics of the interactions of ovomucoid third domain variants with different serine proteinases, Ph.D. Thesis, Purdue University, West Lafayette, IN.
19. Lu, W., Apostol, I., Qasim, M. A., Warne, N., Wynn, R., Zhang, W. L., Andersen, S., Chiang, Y. W., Ogin, E., Rothberg, I., Ryan, K., and Laskowski, M., Jr. (1997) J. Mol. Biol. 266, 441-461.
20. Castro, M. J. M., and Anderson, S. (1996) Biochemistry 35, 11435-11446.
21. Leatherbarrow, R. J. (1987) Enzfitter, version 1.05, Biosoft, Cambridge, U.K.
22. Bates, R. (1973) Determination of pH: Theory and Practice, 2nd ed., pp 59-104, Wiley, New York.
23. Braunschweiler, L., and Ernst, R. R. (1983) J. Magn. Reson. 53, 521-528.
24. Sklenář, V., Piotto, M., Leppik, R., and Saudek, V. (1993) J. Magn. Reson. 102, 241-245.
25. Sussman, J. L., Lin, D., Jiang, J., Manning, N. O., Prilusky, J., Ritter, O., and Abola, E. E. (1998) Acta Crystallogr. D54, 1078-1084.
26. Frigerio, F., Coda, A., Pugliese, L., Lionetti, C., Menegatti, E., Amiconi, G., Schnebli, H. P., Ascenzi, P., and Bolognesi, M. (1992) J. Mol. Biol. 225, 107-123.
27. Collaborative Computational Project, Number 4 (1994) The CCP4 Suite: Program for Protein Crystallography, Acta Crystallogr. D50, 760-763,
28. Laskowski, M., Jr., and Qasim, M. A. (1999) in Proteinase-inhibitor complexes in Protein-Protein Recognition (Kleanthous, C., Ed.) Oxford University Press (in press).
29. Carter, P. J., Winter, G., Wilkinson, A. J., and Fersht, A. R. (1984) Cell 38, 835-840.
30. Wells, J. A. (1990) Biochemistry 29, 8509-8517.
31. Kunitz, M., and Northrop, J. H. (1936) J. Gen. Physiol. 19, 991-1007.
32. Kunitz, M. (1947) J. Gen. Physiol. 30, 291-310.
33. Bidlingmeyer, U. D.-V., Leary, T. R., and Laskowski, M., Jr. (1972) Biochemistry 11, 3303-3310.
34. Born, M. (1920) Volumen und hydratationswärme der ionen, Z. Phys. 1, 45-49.
35. Qasim, M. A., Ranjbar, M. R., Wynn, R., Anderson, S., and Laskowksi, M., Jr. (1995) J. Biol. Chem. 246, 27419-27422.
36. Bigler, T. L., Lu, W., Park, S. J., Tashiro, M., Wieczorek, M., Wynn, R., and Laskowski, M., Jr. (1993) Protein Sci. 2, 786-799.
37. Beckmann, J., Mehlich, A., Schröder, W., Wenzel, H. R., and Tschesche, H. (1988) Eur. J. Biochem. 176, 675-682.
38. Beckmann, J., Mehlich, A., Schröder, W., Wenzel, H. R., and Tschesche, H. (1989) J. Protein Chem. 8, 101-113.
39. Scheeler, I., and Berger, A. (1967) Biochem. Biophys. Res. Commun. 27, 157-162.
40. Kossiakoff, A. A., Hynes, T., and de Vos, A. (1993) Biochem. Soc. Trans. 27, 614-618.