Structural and functional analysis of the six regulatory particle triple-A ATPase subunits from the Arabidopsis 26S proteasome

Plant Journal

Volumn 18, Issue 5, 1999, Pages 529-539

  Fu, Hongyong ^a,c   Doelling, Jed H ^a   Rubin, David M ^b   Vierstra, Richard D ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b HARVARD MEDICAL SCHOOL   (United States)

^c INSTITUTE OF PLANT AND MICROBIAL BIOLOGY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATASE; ADENOSINE TRIPHOSPHATE; AMINO ACID SEQUENCE; PROTEASOME; UBIQUITIN;

ADENOSINE TRIPHOSPHATASES; AMINO ACID SEQUENCE; ARABIDOPSIS; EVOLUTION, MOLECULAR; GENES, PLANT; GENETIC COMPLEMENTATION TEST; GENOME, PLANT; LIGHT; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; PEPTIDE HYDROLASES; PROTEASOME ENDOPEPTIDASE COMPLEX; SEQUENCE HOMOLOGY, AMINO ACID; TISSUE DISTRIBUTION; YEASTS;

ANIMALIA; ARABIDOPSIS; ARABIDOPSIS THALIANA; EMBRYOPHYTA; EUKARYOTA;

EID: 0033152697     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-313X.1999.00479.x     Document Type: Article

References (52)

1. Arendt, C.S. and Hochstrasser, M. (1997) Identification of the yeast 20S proteasome catalytic centers and subunit interactions required for active site formation. Proc. Natl Acad. Sci. USA, 94, 7156-7161.
2. vom Bauer, E., Zechel, C., Heery, D., Heine, M.J.S., Garnier, J.M., Vivat, V., Le Douarin, B., Gronemeyer, H., Chambon, P. and Losson, R. (1996) Differential ligand-dependent interactions between the AF-2 activating domain of nuclear receptors and the putative transcriptional intermediary factors mSUG1 and TIF1. EMBO J. 15, 110-124.
3. Baumeister, W., Walz, J., Zuhl, F. and Seemüller, E. (1998) The proteasome: paradigm of a self compartmentalizing protease. Cell, 92, 367-380.
4. Becker, R., Buschfield, E., Schell, J. and Bachmair, A. (1993) Altered response to viral infection by tobacco plants perturbed in ubiquitin system. Plant J. 3, 875-881.
5. Beyer, A. (1997) Sequence analysis of the AAA protein family. Protein Sci. 6, 2043-2058.
6. Clough, R.C. and Vierstra, R.D. (1997) Phytochrome degradation. Plant Cell Environ. 20, 713-721.
7. Coux, O., Tanaka, K. and Goldberg, A.L. (1996) Structure and functions of the 20S and 26S proteasomes. Annu. Rev. Biochem. 65, 801-847.
8. DeMartino, G.N., Moomaw, C.R., Zagnitko, O.P., Proske, R.J., Chu-Ping, M., Afendis, S.J., Swaffield, J.C. and Slaughter, C.A. (1994) PA700, an ATP-dependent activator of the 20S proteasome, is an ATPase containing multiple members of a nucleotide-binding protein family. J. Biol. Chem. 269, 20878-20884.
9. Dubiel, W., Ferrell, K., Pratt, G. and Rechsteiner, M. (1992) Subunit 4 of the 26S protease is a member of a novel eukaryotic ATPase family. J. Biol. Chem. 267, 22699-22702.
10. Finley, D., Tanaka, K., Mann, C. et al. (1998) Unified nomenclature for subunits of the Saccharomyces cerevisiae proteasome regulatory particle. Trends Biochem. Sci. 23, 244-245.
11. Fu, H., Sadis, S., Rubin, D.M., Glickman, M.H., van Nocker, S., Finley, D. and Vierstra, R.D. (1998a) Multiubiquitin chain binding and protein degradation are mediated by distinct domains within the 26S proteasome subunit MCB1. J. Biol. Chem. 273, 1970-1989.
12. Fu, H., Doelling, J.H., Arendt, C.S., Hochstrasser, M. and Vierstra, R.D. (1998b) Molecular organization of the 20S proteasome gene family from Arabidopsis thaliana. Genetics, 149, 677-692.
13. Genschik, P., Criqui, M.C., Parmentier, Y., Derevier, A. and Fleck, J. (1998) Cell cycle-dependent proteolysis in plants: identification of the destruction box pathway and metaphase arrest produced by the proteasome inhibitor MG132. Plant Cell, 10, 2063-2075.
14. Ghislain, M., Udvardy, A. and Mann, C. (1993) S. cerevisiae 26S protease mutants arrest cell division in G2/metaphase. Nature, 366, 358-362.
15. Gietz, R.D., Schiestl, R.H., Willems, A.R. and Woods, R.A. (1995) Studies on the transformation of intact yeast cells by LiAc/SS-DNA/PEG procedure. Yeast, 11, 355-360.
16. Gietz, R.D. and Sugino, A. (1988) New yeast-Escherichia coli shuttle vectors constructed with in vitro mutagenized yeast genes lacking six-base restriction sites. Gene, 74, 527-534.
17. Girod, P.-A., Fu, H., Zyrd, J.-P. and Vierstra, R.D. (1999) Multiubiquitin chain-binding subunit MCB1 (RPN10) with the 26S proteasome is essential for developmental progression in Physcomitrella patens. Plant Cell, in press.
18. Glickman, M.H., Rubin, D.M., Fried, V.A. and Finley, D. (1998a) The regulatory particle of the Saccharomyces cerevisiae proteasome. Mol. Cell. Biol. 18, 3149-3162.
19. Glickman, M.H., Rubin, D.M., Coux, O., Wefes, I., Pfeifer, G., Cjeka, Z., Baumeister, W., Fried, V.A. and Finley, D. (1998b) A subcomplex of the proteasome regulatory particle required for ubiquitin-conjugate degradation and related to the COP9-signalosome and elF3. Cell, 94, 615-623.
20. Gordon, C., McGurk, G., Dillon, P., Rosen, C. and Hastie, N.D. (1993) Defective mitosis due to a mutation in the gene for a fission yeast 26S protease subunit. Nature, 366, 355-357.
21. Groll, M., Ditzel, L., Löwe, J., Stock, D., Bochtler, M., Bartunik, H.D. and Huber, R. (1997) Structure of the 20S proteasome from yeast at 2.4Å resolution. Nature, 386, 463-471.
22. Hershko, A. and Ciechanover, A. (1998) The ubiquitin system. Annu. Rev. Biochem. 67, 425-479.
23. Hochstrasser, M. (1996) Ubiquitin-dependent protein degradation. Annu. Rev. Genet. 30, 405-439.
24. Hoffman, L. and Rechsteiner, M. (1996) Nucleotidase activities of the 26S proteasome and its regulatory complex. J. Biol. Chem. 271, 32538-32545.
25. Ingram, G.C., Goodrich, J., Wilkinson, M.D., Simon, R., Haughn, G.W. and Coen, E.S. (1995) Parallels between UNUSUAL FLORAL ORGANS and FIMBRIATA, genes controlling flower development in Arabidopsis and Antirrhinum. Plant Cell, 7, 1501-1510.
26. Ito, N., Tomizawa, K., Tanaka, K., Matsui, M., Kendrick, R.E., Sato, T. and Nakagawa, H. (1997) Characterization of 26S proteasome α-and β-type and ATPase subunits from spinach and their expression during early stages of seedling development. Plant Mol. Biol. 34, 307-316.
27. Kaiser, C., Michaelis, S. and Mitchell, A. (1994) Methods in Yeast Genetics: A Cold Spring Harbor Laboratory Course Manual. Cold Spring Harbor: Cold Spring Harbor Laboratory Press.
28. Kitashiba, H. and Toriyama, K. (1997) Expression of a gene for a protein similar to HIV-1 Tat-binding protein 1 (TBP1) in floral organs of Brassica rapa. Plant Cell Physiol. 38, 966-969.
29. Kwok, S.F., Staub, J.M. and Deng, X.-W. (1999) Characterization of two subunits of Arabidopsis 193 proteasome regulatory complex and its possible interaction with the COP9 complex. J. Mol. Biol. 285, 85-95.
30. Löwe, J., Stock, D., Jap, F., Zwickl, P. and Baumeister, W. (1995) Crystal structure of the 20S proteasome from archaeon T. acidophilum at 3.4Å resolution. Science, 268, 533-539.
31. Lupas, A., Van Dyke, M. and Stock, J. (1991) Predicting coiledcoils from protein sequences. Science, 252, 1162-1164.
32. Makino, Y., Yamano, K., Kanemaki, M., Morikawa, K., Kishimoto, T., Shimbara, N., Tanaka, K. and Tamura, T.-A. (1997) SUG1, a component of the 26S proteasome, is an ATPase stimulated by specific RNAs. J. Biol. Chem. 272, 23210-23205.
33. Nelbock, P., Dillon, P.J., Perkins, A. and Rosen, A.C. (1990) A cDNA for a protein that interacts with the human immunodeficiency virus Tat transactivator. Science, 248, 1650-1653.
34. van Nocker, S., Sadis, S., Rubin, D.M., Glickman, M.H., Fu, H., Coux, O., Wefes, I., Finley, D. and Vierstra, R.D. (1996) The multiubiquitin chain binding protein Mcb1 is a component of the 26S proteasome in S. cerevisiae and plays a nonessential, substrate-specific role in protein turnover, Mol. Cell. Biol. 11, 6020-6028.
35. Parmentier, Y., Bouchez, B., Fleck, J. and Genschik, P. (1997) The proteasome gene family in Arabidopsis thaliana. FEBS Lett. 416, 281-285.
36. Patel, S. and Latterich, M. (1998) The AAA team related ATPases with diverse functions. Trends Cell Biol. 8, 65-71.
37. 2+-dependent ATPases. Plant Mol. Biol. 27, 1109-1118.
38. Rapp, J.C., Baumgartmer, B.J. and Mullet, J.E. (1992) Quantitative analysis of transcription and RNA levels of 15 barley chloroplast genes. J. Biol. Chem. 267, 21404-21414.
39. Rechsteiner, M., Huffman, L. and Dubiel, W. (1993) The multicatalytic and 26S proteases. J. Biol. Chem. 268, 6065-6068.
40. Richmond, D., Gorbea, C. and Rechsteiner, M. (1997) Specific interactions between ATPase subunits of the 26S protease. J. Biol. Chem. 272, 13403-13411.
41. Rubin, D.M., Glickman, M.H., Larsen, C.N., Dhruvakumar, S. and Finley, D. (1998) Active site mutants in the six regulatory particle ATPases reveal multiple roles for ATP in the proteasome. EMBO J. 17, 4909-4919.
42. Ruegger, M., Dewey, E., Gray, W.M., Hobbie, L., Turner, J. and Estelle, M. (1998) The TIR1 protein of Arabidopsis functions in auxin response and is related to human SKP2 and yeast Grr1p. Genes Dev. 12, 198-207.
43. Schnall, R., Mannhaupt, G., Stucka, R., Tauer, R., Ehnle, S., Schwarzlose, C., Vetter, I. and Feldmann, H. (1994) Identification of a set of yeast genes coding for a novel family of putative ATPases with high similarity to constituents of the 26S protease complex. Yeast, 10, 1141-1155.
44. Seeger, M., Kraft, R., Ferrell, K., Bech-Otschir, D., Dumdey, R., Schade, R., Gordon, C., Naumann, M. and Dubiel, W. (1998) A novel protein complex involved in signal transduction possessing similarities to 26S proteasome subunits. FASEB J. 12, 469-478.
45. Seemüller, E., Lupas, A., Stock, D.L., Löwe, J., Huber, R. and Baumeister, W. (1995) Proteasome from Thermoplasma acidophilum: a threonine protease. Science, 268, 579-582.
46. Snustad, D.P., Haas, N.A., Kopczak, S.D. and Silflow, C.D. (1992) The small genome of Arabidopsis contains at least nine expressed tubulin genes. Plant Cell, 4, 549-556.
47. Swaffield, J.C., Bromberg, J.F. and Johnston, S.A. (1992) Alterations in a yeast protein resembling HIV Tat-binding protein relieve requirement for an acidic activation domain in GAL4. Nature, 357, 698-700.
48. Tanahashi, N., Tsurumi, C., Tamura, T. and Tanaka, K. (1993) Molecular structures of 20S and 26S proteasomes. Enzyme Protein, 47, 241-251.
49. Vierstra, R.D. (1996) Proteolysis in plants: mechanisms and functions. Plant Mol. Biol. 32, 275-302.
50. Wei, N., Tomohiko, T., Serino, G., Dohmae, H., Takio, K., Matsui, M. and Deng, X.-W. (1998) The COP9 complex is conserved between higher plants and mammals and is structurally related to the 26S proteasome regulatory complex. Current Biol. 8, 919-921.
51. Woffenden, B.J., Freedman, T.B. and Beers, E.P. (1998) Proteasome inhibitors prevent tracheary element differentiation in Zinna mesophyll cell cultures. Plant Physiol. 118, 419-429.
52. Xie, D.-X., Feys, B.F., James, S., Nieto-Rostro, M. and Turner, J.G. (1998) CO/1: an Arabidopsis gene required for jasmonate-regulated defense and fertility. Science, 280, 1091-1094.