메뉴 건너뛰기




Volumn 261, Issue 1, 1999, Pages 301-310

DNA triple-helix formation on nucleosome core particles. Effect of length of the oligopurine tract

Author keywords

Anti gene; Footprinting; Nucleosomes; Sequence recognition; Triplex DNA

Indexed keywords

DNA; DNA FRAGMENT; PURINE DERIVATIVE;

EID: 0033119030     PISSN: 00142956     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1432-1327.1999.00279.x     Document Type: Article
Times cited : (11)

References (36)
  • 1
    • 33748577758 scopus 로고
    • Sequence-specific recognition and modification of double helical DNA by oligonucleotides
    • 1. Thuong, N.T. & Hélène, C. (1993) Sequence-specific recognition and modification of double helical DNA by oligonucleotides. Angewandte Chemie 32, 666-690.
    • (1993) Angewandte Chemie , vol.32 , pp. 666-690
    • Thuong, N.T.1    Hélène, C.2
  • 3
    • 0023619361 scopus 로고
    • Sequence-specific cleavage of double helical DNA by triple helix formation
    • 3. Moser, H.E. & Dervan, P.B. (1987) Sequence-specific cleavage of double helical DNA by triple helix formation. Science 238, 645-650.
    • (1987) Science , vol.238 , pp. 645-650
    • Moser, H.E.1    Dervan, P.B.2
  • 4
    • 0023652076 scopus 로고
    • Sequence specific recognition, photocrosslinking and cleavage of the DNA double helix by and α-oligothymidylate covalently linked to an azidoproflavine derivative
    • 4. Le Doan, T., Perrouault, L., Praseuth, D., Habhoub, N., Decout, J.L., Thuong, N.T., Lhomme, J. & Hélène, C. (1987) Sequence specific recognition, photocrosslinking and cleavage of the DNA double helix by and α-oligothymidylate covalently linked to an azidoproflavine derivative. Nucleic Acids. Res. 15, 7749-7760.
    • (1987) Nucleic Acids. Res. , vol.15 , pp. 7749-7760
    • Le Doan, T.1    Perrouault, L.2    Praseuth, D.3    Habhoub, N.4    Decout, J.L.5    Thuong, N.T.6    Lhomme, J.7    Hélène, C.8
  • 6
    • 0025817256 scopus 로고
    • Second structural motif for recognition of DNA by oligonucleotide-directed triple-helix formation
    • 6. Beal, P.A. & Dervan, P.B. (1991) Second structural motif for recognition of DNA by oligonucleotide-directed triple-helix formation. Science 251, 1360-1363.
    • (1991) Science , vol.251 , pp. 1360-1363
    • Beal, P.A.1    Dervan, P.B.2
  • 7
    • 0026668192 scopus 로고
    • The influence of single base triplet changes on the stability of a Pur·Pur·Pyr triple helix determined by affinity cleavage
    • 7. Beal, P.A. & Dervan, P.B. (1992) The influence of single base triplet changes on the stability of a Pur·Pur·Pyr triple helix determined by affinity cleavage. Nucleic Acids Res. 20, 2773-2776.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 2773-2776
    • Beal, P.A.1    Dervan, P.B.2
  • 8
    • 0026091057 scopus 로고
    • Nuclear magnetic resonance structural studies of intramolecular purine·purine·pyrimidine DNA triplexes in solution
    • 8. Radhakrishnan, I., de los Santos, C. & Patel, D.J. (1991) Nuclear magnetic resonance structural studies of intramolecular purine·purine·pyrimidine DNA triplexes in solution. J. Mol. Biol. 221, 1403-1418.
    • (1991) J. Mol. Biol. , vol.221 , pp. 1403-1418
    • Radhakrishnan, I.1    De Los Santos, C.2    Patel, D.J.3
  • 9
    • 0026349087 scopus 로고
    • The antigene strategy: Control of gene expression by triplex-forming oligonucleotides
    • 9. Hélène, C. (1991) The antigene strategy: control of gene expression by triplex-forming oligonucleotides. Anticancer Drug Des. 6, 569-584.
    • (1991) Anticancer Drug Des. , vol.6 , pp. 569-584
    • Hélène, C.1
  • 10
    • 0030902414 scopus 로고    scopus 로고
    • Triplex DNA: Fundamentals, advances and potential applications for gene therapy
    • 10. Chan, P.P. & Glazer, P.M. (1997) Triplex DNA: fundamentals, advances and potential applications for gene therapy. J. Mol. Med. 75, 267-282.
    • (1997) J. Mol. Med. , vol.75 , pp. 267-282
    • Chan, P.P.1    Glazer, P.M.2
  • 11
    • 0030861344 scopus 로고    scopus 로고
    • Recent developments in triple-helix regulation of gene expression
    • 11. Neidle, S. (1997) Recent developments in triple-helix regulation of gene expression. Anti-Cancer Drug Design 12, 433-442.
    • (1997) Anti-cancer Drug Design , vol.12 , pp. 433-442
    • Neidle, S.1
  • 12
    • 0031893854 scopus 로고    scopus 로고
    • Triplex-directed modification of genes and gene activity
    • 12. Vasquez, K.M. & Wilson, J.H. (1998) Triplex-directed modification of genes and gene activity. Trends Biochem. Sci. 23, 4-9.
    • (1998) Trends Biochem. Sci. , vol.23 , pp. 4-9
    • Vasquez, K.M.1    Wilson, J.H.2
  • 14
    • 0021760689 scopus 로고
    • Structure of the nucleosome core particle at 7 Å resolution
    • 14. Richmond, T.J., Finch, J.T., Rushton, B., Rhodes, D. & Klug, A. (1984) Structure of the nucleosome core particle at 7 Å resolution. Nature 311, 532-537.
    • (1984) Nature , vol.311 , pp. 532-537
    • Richmond, T.J.1    Finch, J.T.2    Rushton, B.3    Rhodes, D.4    Klug, A.5
  • 15
    • 0021856816 scopus 로고
    • Crystallographic structure of the octameric protein core of the nucleosome at a resolution of 3.3 Å
    • 15. Burlingame, R.W., Love, W.E., Wang, B.-C., Hamlin, R., Xuong, N.-H. & Moudrianakis, E.N. (1985) Crystallographic structure of the octameric protein core of the nucleosome at a resolution of 3.3 Å. Science 228, 546-553.
    • (1985) Science , vol.228 , pp. 546-553
    • Burlingame, R.W.1    Love, W.E.2    Wang, B.-C.3    Hamlin, R.4    Xuong, N.-H.5    Moudrianakis, E.N.6
  • 16
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2.8 Å resolution
    • 16. Luger, K., Mäder, A.W., Richmond, R.K., Sargent, D.F. & Richmond, T.J. (1997) Crystal structure of the nucleosome core particle at 2.8 Å resolution. Nature 389, 251-260.
    • (1997) Nature , vol.389 , pp. 251-260
    • Luger, K.1    Mäder, A.W.2    Richmond, R.K.3    Sargent, D.F.4    Richmond, T.J.5
  • 17
    • 0022500637 scopus 로고
    • Deletion analysis of a DNA sequence that positions itself precisely on the nucleosome core
    • 17. Ramsay, N. (1986) Deletion analysis of a DNA sequence that positions itself precisely on the nucleosome core. J. Mol. Biol. 189, 179-188.
    • (1986) J. Mol. Biol. , vol.189 , pp. 179-188
    • Ramsay, N.1
  • 18
    • 0023181481 scopus 로고
    • Sequence specific positioning of core histones on an 860 base pair DNA: Experiment and theory
    • 18. Drew, H.R. & Calladine, C.R. (1987) Sequence specific positioning of core histones on an 860 base pair DNA: experiment and theory. J. Mol. Biol. 195, 143-173.
    • (1987) J. Mol. Biol. , vol.195 , pp. 143-173
    • Drew, H.R.1    Calladine, C.R.2
  • 19
    • 0022230224 scopus 로고
    • DNA bending and its relation to nucleosome positioning
    • 19. Drew, H.R. & Travers, A.A. (1985) DNA bending and its relation to nucleosome positioning. J. Mol. Biol. 186, 773-790.
    • (1985) J. Mol. Biol. , vol.186 , pp. 773-790
    • Drew, H.R.1    Travers, A.A.2
  • 20
    • 0024395456 scopus 로고
    • Formation, stability and core histone positioning of nucleosome reassembled on bent and other nucleosome-derived DNA
    • 20. Pennings, S., Muyldermans, S., Meersseman, G. & Wyns, L. (1989) Formation, stability and core histone positioning of nucleosome reassembled on bent and other nucleosome-derived DNA. J. Mol. Biol. 207, 183-192.
    • (1989) J. Mol. Biol. , vol.207 , pp. 183-192
    • Pennings, S.1    Muyldermans, S.2    Meersseman, G.3    Wyns, L.4
  • 22
    • 0024373679 scopus 로고
    • DNA conformation and protein binding
    • 22. Travers, A.A. (1989) DNA conformation and protein binding. Annu. Rev. Biochem. 58, 427-452.
    • (1989) Annu. Rev. Biochem. , vol.58 , pp. 427-452
    • Travers, A.A.1
  • 23
    • 0019867238 scopus 로고
    • Nucleosomes will not form on double stranded RNA or over polydA·polydT tracts in recombinant DNAs
    • 23. Kunkel, G.R. & Martinson, H.G. (1981) Nucleosomes will not form on double stranded RNA or over polydA·polydT tracts in recombinant DNAs. Nucleic Acids Res. 9, 6859-6888.
    • (1981) Nucleic Acids Res. , vol.9 , pp. 6859-6888
    • Kunkel, G.R.1    Martinson, H.G.2
  • 24
    • 0026357505 scopus 로고
    • Poly[d(A·T)] and other synthetic polydeoxynucleotides containing oligoadenosine tracts form nucleosomes easily
    • 24. Puhl, H.L., Gudibande, S.R. & Behe, M.J. (1991) Poly[d(A·T)] and other synthetic polydeoxynucleotides containing oligoadenosine tracts form nucleosomes easily. J. Mol. Biol. 222, 1149-1160.
    • (1991) J. Mol. Biol. , vol.222 , pp. 1149-1160
    • Puhl, H.L.1    Gudibande, S.R.2    Behe, M.J.3
  • 25
    • 0026523410 scopus 로고
    • Wrapping of genomic polydA·polydT around nucleosome core particles
    • 25. Fox, K.R. (1992) Wrapping of genomic polydA·polydT around nucleosome core particles. Nucleic Acids Res. 20, 1235-1242.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 1235-1242
    • Fox, K.R.1
  • 26
    • 0001079085 scopus 로고
    • Artificial nucleosome positioning sequences
    • 26. Schrader, T.E. & Crothers, D.M. (1989) Artificial nucleosome positioning sequences. Proc. Natl Acad. Sci. USA 86, 7418-7422.
    • (1989) Proc. Natl Acad. Sci. USA , vol.86 , pp. 7418-7422
    • Schrader, T.E.1    Crothers, D.M.2
  • 28
    • 0029016341 scopus 로고
    • Triple helix DNA alters nucleosomal histone - DNA interactions and acts as a nucleosome barrier
    • 28. Westin, L., Blomquist, P., Milligan, J.F. & Wrange, Ö. (1995) Triple helix DNA alters nucleosomal histone - DNA interactions and acts as a nucleosome barrier. Nucleic Acids Res. 23, 2184-2191.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 2184-2191
    • Westin, L.1    Blomquist, P.2    Milligan, J.F.3    Wrange, O.4
  • 29
    • 0029851408 scopus 로고    scopus 로고
    • Nucleosome core particles inhibit DNA triple helix formation
    • 29. Brown, P.M. & Fox, K.R. (1996) Nucleosome core particles inhibit DNA triple helix formation. Biochem. J. 319, 607-611.
    • (1996) Biochem. J. , vol.319 , pp. 607-611
    • Brown, P.M.1    Fox, K.R.2
  • 30
    • 0032542023 scopus 로고    scopus 로고
    • Triple helix formation at different positions on nucleosomal DNA
    • 30. Brown, P.M., Madden, C.A. & Fox, K.R. (1998) Triple helix formation at different positions on nucleosomal DNA. Biochemistry 37, 16139-16151.
    • (1998) Biochemistry , vol.37 , pp. 16139-16151
    • Brown, P.M.1    Madden, C.A.2    Fox, K.R.3
  • 31
    • 0032527766 scopus 로고    scopus 로고
    • DNA triple helix formation on nucleosome-bound poly(dA·poly(dT) tracts
    • 31. Brown, P.M. & Fox, K.R. (1998) DNA triple helix formation on nucleosome-bound poly(dA)·poly(dT) tracts. Biochem. J. 333, 259-267.
    • (1998) Biochem. J. , vol.333 , pp. 259-267
    • Brown, P.M.1    Fox, K.R.2
  • 33
    • 0028609271 scopus 로고
    • Effect of a triplex binding ligand on parallel and antiparallel triple helices using short unmodified an acridine-linked oligonucleotides
    • 33. Cassidy, S.A., Strekowski, L., Wilson, W.D. & Fox, K.R. (1994) Effect of a triplex binding ligand on parallel and antiparallel triple helices using short unmodified an acridine-linked oligonucleotides. Biochemistry 33, 15338-15347.
    • (1994) Biochemistry , vol.33 , pp. 15338-15347
    • Cassidy, S.A.1    Strekowski, L.2    Wilson, W.D.3    Fox, K.R.4
  • 34
    • 0029053609 scopus 로고
    • Footprinting studies on ligands which stabilise DNA triplexes: Effects of stringency within a parallel triple helix
    • 34. Chandler, S.P., Strekowski, L., Wilson, W.D. & Fox, K.R. (1995) Footprinting studies on ligands which stabilise DNA triplexes: effects of stringency within a parallel triple helix. Biochemistry 34, 7234-7242.
    • (1995) Biochemistry , vol.34 , pp. 7234-7242
    • Chandler, S.P.1    Strekowski, L.2    Wilson, W.D.3    Fox, K.R.4
  • 35
    • 0021140818 scopus 로고
    • DNA structural variations in the E.coli tyrT promoter
    • 35. Drew, H.R. & Travers, A.A. (1984) DNA structural variations in the E.coli tyrT promoter. Cell 37, 491-502.
    • (1984) Cell , vol.37 , pp. 491-502
    • Drew, H.R.1    Travers, A.A.2
  • 36
    • 0021032963 scopus 로고
    • RNA polymerase interactions with the upstream region of the E.coli tyrT promoter
    • 36. Travers, A.A., Lamond, A.I., Mace, H.A.F. & Berman, M.L. (1983) RNA polymerase interactions with the upstream region of the E.coli tyrT promoter. Cell 35, 265-273.
    • (1983) Cell , vol.35 , pp. 265-273
    • Travers, A.A.1    Lamond, A.I.2    Mace, H.A.F.3    Berman, M.L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.