Map positions of SFR genes in relation to other freezing-related genes of Arabidopsis thaliana

Plant Journal

Volumn 17, Issue 4, 1999, Pages 445-452

  Thorlby, Glenn ^a   Veale, Emma ^a   Butcher, Kevin ^a   Warren, Gareth ^a  

^a IMPERIAL COLLEGE LONDON   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

COLD TOLERANCE; GENE EXPRESSION; GENE INDUCTION; GENE LOCATION; MUTANT; OXIDATION; PLANT GENETICS;

ABSCISIC ACID; ADAPTATION, PHYSIOLOGICAL; ANTIFREEZE PROTEINS; ARABIDOPSIS; BASE SEQUENCE; DNA PRIMERS; GENES, PLANT; GLYCOPROTEINS; MOLECULAR SEQUENCE DATA; MUTATION; OXIDATIVE STRESS; PHYSICAL CHROMOSOME MAPPING;

ARABIDOPSIS THALIANA; EMBRYOPHYTA;

EID: 0033084110     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-313X.1999.00395.x     Document Type: Article

References (67)

1. Altschul, F., Madden, T.L., Schäffer, A.A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucl. Acids Res. 25, 3389-3402.
2. Artus, N.N., Uemura, M., Steponkus, P.L., Gilmour, S.J., Lin, C. and Thomashow, M.F. (1996) Constitutive expression of the cold-regulated Arabidopsis thaliana COR15a gene affects both chloroplast and protoplast freezing tolerance. Proc. Natl Acad. Sci. USA, 93, 13404-13409.
3. Bell, C.J. and Ecker, J.R. (1994) Assignment of 30 microsatellite loci to the linkage map of Arabidopsis. Genomics, 19, 137-144.
4. Bevan, M., Purnelle, B., Boutry, M., Goffeau, A., Hoheisel, J., Mewes, H.W., Mayer, K. and Schueller, C. (1998) EU Arabidopsis sequencing project: BAC clone M4E13. Genbank Locus ATM4E13, Accession No. AL022023.
5. Bridger, G.M., Yang, W., Falk, D.E. and McKersie, B.D. (1994) Cold acclimation increases tolerance of activated oxygen in winter cereals. J. Plant Physiol. 144, 235-240.
6. Camilleri, C., Lafleuriel, J., Macadré, C., Varoquaux, F., Parmentier, Y., Picard, G., Caboche, M. and Bouchez, D. (1998) A YAC contig map of Arabidopsis thaliana chromosome 3. Plant J. 14, 633-642.
7. Capel, J., Jarillo, J.A., Salinas, J. and Martinez-Zapater, J.M. (1997) Two homologous low-temperature-inducible genes from Arabidopsis encode highly hydrophobic proteins. Plant Physiol. 115, 569-576.
8. Carpenter, C.D., Kreps, J.A. and Simon, A.E. (1994) Genes encoding glycine-rich Arabidopsis thaliana proteins with RNA-binding motifs are influenced by cold treatment and an endogenous circadian rhythm. Plant Physiol. 104, 1015-1025.
9. Chevalier, C., Yamaguchi, J. and McCourt, P. (1992) Nucleotide sequence of a cDNA for catalase from Arabidopsis thaliana. Plant Physiol. 99, 1726-1728.
10. Conklin, P.L., Williams, E.H. and Last, R.L. (1996) Environmental stress sensitivity of an ascorbic acid-deficient Arabidopsis mutant. Proc. Natl Acad. Sci. USA, 93, 9970-9974.
11. Cutler, S., Ghassemian, M., Bonetta, D., Cooney, S. and McCourt, P. (1996) A protein farnesyl transferase involved in abscisic acid signal transduction in Arabidopsis. Science, 273, 1239-1241.
12. Dellaporta, S.L., Wood, J. and Hicks, J.B. (1983) Isolation of DNA from higher plants. Plant Mol. Biol. Report, 4, 19-21.
13. Edwards, K., Johnstone, C. and Thompson, C. (1991) A simple and rapid method for the preparation of plant genomic DNA for PCR analysis. Nucl. Acids Res. 19, 1349.
14. Finkelstein, R.R. (1994) Mutations at two new Arabidopsis ABA-responsive loci are similar to abi3 mutations. Plant J. 5, 765-771.
15. Finkelstein, R.R., Wang, M.L., Lynch, T.J., Rao, S. and Goodman, H.M. (1998) The Arabidopsis abscisic acid response locus ABI4 encodes an APETALA2 domain protein. Plant Cell, 10, 1043-1054.
16. Frugoli, J.A., Zhong, H.H., Nuccio, M.L., McCourt, P., McPeek, M.A., Thomas, T.L. and McClung, C.R. (1996) Catalase is encoded by a multigene family in Arabidopsis thaliana (L.) Heynh. Plant Physiol. 112, 327-336.
17. Fukuchi-Mizutani, M., Tasaka, Y., Tanaka, Y., Ashikari, T., Kusumi, T. and Murata, N. (1998) Characterization of Delta-9 acyl-lipid desaturase homologues from Arabidopsis thaliana. Plant Cell Physiol. 39, 247-253.
18. Gilmour, S.J., Hajela, R.K. and Thomashow, M.F. (1988) Cold acclimation of Arabidopsis thaliana. Plant Physiol. 87, 745-750.
19. Gilmour, S.J., Artus, N.N. and Thomashow, M.F. (1992) cDNA sequence analysis and expression of two cold-regulated genes of Arabidopsis thaliana. Plant Mol. Biol. 18, 13-22.
20. Giraudat, J., Hauge, B., Valon, C., Smalle, J., Parcy, F. and Goodman, H. (1992) Isolation of the Arabidopsis ABI3 gene by positional cloning. Plant Cell, 4, 1251-1261.
21. Hartweck, L.M., Llewellyn, D.J. and Dennis, E.S. (1997) The Arabidopsis thaliana genome has multiple divergent forms of phosphoinositol-specific phospholipase C. Gene, 202, 151-156.
22. Hauge, B.M., Hanley, S.M., Cartinhour, S., et al. (1993) An integrated genetic/RFLP map of the Arabidopsis thaliana genome. Plant J. 3, 745-754.
23. Hindges, R. and Slusarenko, A. (1992) cDNA and derived amino acid sequence of a cytosolic Cu,Zn superoxide dismutase from Arabidopsis thaliana (L.) Heyhn. Plant Mol. Biol. 18, 123-125.
24. Hirayama, T., Ohto, C., Mizoguchi, T. and Shinozaki, K. (1995) A gene encoding a phosphatidylinositol-specific phospholipase C is induced by dehydration and salt stress in Arabidopsis thaliana. Proc. Natl Acad. Sci. USA, 92, 3903-3907.
25. Horvath, D.P., McLarney, B.K. and Thomsahow, M.F. (1993) Regulation of Arabidopsis thaliana L. (Heyn) COR78 in response to low temperature. Plant Physiol. 103, 1047-1053.
26. Hughes, M.A. and Dunn, M.A. (1996) The molecular biology of plant acclimation to low temperature. J. Exp. Bot. 47, 291-305.
27. Jaglo-Ottosen, K.R., Gilmour, S.J., Zarka, D.G., Schabenberger, O. and Thomashow, M.F. (1998) Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance. Science, 280, 104-106.
28. Jarillo, J.A., Leyva, A., Salinas, J. and Martinez Zapater, J.M. (1993) Low temperature induces the accumulation of alcohol dehydrogenase mRNA in Arabidopsis thaliana, a chilling-tolerant plant. Plant Physiol. 101, 833-837.
29. Jarillo, J.A., Capel, J., Leyva, A., Martinez-Zapater, J.M. and Salinas, J. (1994) Two related low-temperature-inducible genes of Arabidopsis encode proteins showing high homology to 14-3-3 proteins, a family of putative kinase regulators. Plant Mol. Biol. 25, 693-704.
30. Karpinski, S., Escobar, C., Karpinski, B., Creissen, G. and Mullineaux, P. (1997) Photosynthetic electron transport regulates the expression of cytosolic ascorbate peroxidase genes in Arabidopsis during excess light stress. Plant Cell, 9, 627-640.
31. Kiyosue, T., Abe, H., Yamaguchi-Shinozaki, K. and Shinozaki, K. (1998) ERD6, a cDNA clone for an early dehydration-induced gene of Arabidopsis, encodes a putative sugar transporter. Biochim. Biophys. Acta, 1370, 187-191.
32. Kliebenstein, D.J., Monde, R.-A. and Last, R.L. (1998) Superoxide dismutase in Arabidopsis: an eclectic enzyme family with disparate regulation and protein localization. Plant Physiol. 118, 637-650.
33. Knight, H., Trewavas, A.J. and Knight, M.R. (1997) Calcium signalling in Arabidopsis thaliana responding to drought and salinity. Plant J. 12, 1067-1078.
34. Konieczny, A. and Ausubel, F.M. (1993) A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers. Plant J. 4, 403-410.
35. Koornneef, M. (1986) Genetic aspects of abscisic acid. In A Genetic Approach to Plant Biochemistry: Plant Gene Research, Vol. 3 (Blonstein, A.D. and King, P.J. eds.) Springer-Verlag. pp. 35-54.
36. Koornneef, M., Jorna, M., Derswan, D. and Karssen, C. (1982) The isolation of abscisic-acid (ABA) deficient mutants by selection of induced revertants in non-germinating gibberellin sensitive lines of Arabidopsis thaliana (L) Heynh. Theor. Appl. Genet. 61, 385-393.
37. Koornneef, M., Reuling, G. and Karssen, C. (1984) The isolation and characterization of abscisic acid-insensitive mutants of Arabidopsis thaliana. Physiol. Plant. 61, 377-383.
38. Kosambi, D.D. (1944) The estimation of map distance from recombination values. Ann. Eugenics, 12, 172-175.
39. Kubo, A., Saji, H., Tanaka, K., Tanaka, K. and Kondo, N. (1992) Cloning and sequencing of a cDNA encoding ascorbate peroxidase from Arabidopsis thaliana. Plant Mol. Biol. 18, 691-701.
40. Kurkela, S. and Franck, M. (1990) Cloning and characterization of a cold and ABA-inducible Arabidopsis gene. Plant Mol. Biol. 15, 137-144.
41. Lang, V. and Palva, E.T. (1992) The expression of a rab-related gene, RAB18, is induced by abscisic acid during the cold acclimation process of Arabidopsis thaliana (L.) Heynh. Plant Mol. Biol. 20, 951-962.
42. Léon-Kloosterziel, K.M., Gil, M.A., Ruijs, G.J., Jacobsen, S.E., Olszewski, N.E., Schwartz, S.H., Zeevaart, J.A.D. and Koornneef, M. (1996) Isolation and characterization of abscisic acid-deficient Arabidopsis mutants at two new loci. Plant J. 10, 655-661.
43. Leung, J., Bouvier-Durand, M., Morris, P.C., Guerrier, D., Chefdor, F. and Giraudat, J. (1994) Arabidopsis ABA response gene ABI1: features of a calcium-modulated protein phosphatase. Science, 264, 1448-1452.
44. Leung, J., Merlot, S. and Giraudat, J. (1997) The Arabidopsis ABSCISIC ACID-INSENSITIVE2 (ABI2) and ABI1 genes encode homologous protein phosphatases 2C involved in abscisic acid signal transduction. Plant Cell, 9, 759-771.
45. Leyva, A., Jarillo, J.A., Salinas, J. and Martinez Zapater, J.M. (1995) Low temperature induces the accumulation of phenylalanine ammonia-lyase and chalcone synthase mRNAs of Arabidopsis thaliana in a light-dependent manner. Plant Physiol. 108, 39-46.
46. Lin, C. and Thomashow, M.F. (1992) DNA sequence analysis of a complementary DNA for cold-regulated Arabidopsis gene COR15 and characterization of the COR15 polypeptide. Plant Physiol. 99, 519-525.
47. Lister, C. and Dean, C. (1993) Recombinant inbred lines for mapping RFLP and phenotypic markers in Arabidopsis thaliana. Plant J. 4, 745-750.
48. Liu, Q., Kasuga, M., Sakuma, Y., Abe, H., Miura, S., Yamaguchi-Shinozaki, Y. and Shinozaki, K. (1998) Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis. Plant Cell 10, 1391-1406.
49. Liu, Y.G., Mitsukawa, N., Lister, C., Dean, C. and Whittier, R.F. (1996) Isolation and mapping of a new set of 129 RFLP markers in Arabidopsis thaliana using recombinant inbred lines. Plant J. 10, 733-736.
50. Llorente, F., Martinez-Zapater, J.M. and Salinas, J. (1998) Molecular characterization of a new gene from Arabidopsis encoding for a peroxidase: Arabidopsis thaliana peroxidase precursor (RCI3A) mRNA. Genbank Locus ATU97684, Accession No. U97684.
51. McKersie, B.D., Chen, Y., DeBeus, M., Bowley, S.R., Bowler, C., Inze, D., D'Halluin, K. and Botterman, J. (1993) Superoxide dismutase enhances tolerance of freezing stress in transgenic alfalfa (Medicago sativa L). Plant Physiol. 103, 1155-1163.
52. McKown, R., Kuroki, G. and Warren, G. (1996) Cold responses of Arabidopsis mutants impaired in freezing tolerance. J. Exp. Bot. 47, 1919-1925.
53. Mantyla, E., Lang, V. and Palva, E.T. (1995) Role of abscisic acid in drought-induced freezing tolerance, cold acclimation, and accumulation of LTI78 and RAB18 proteins in Arabidopsis thaliana. Plant Physiol. 107, 141-148.
54. Marin, E., Nussaume, L., Quesada, A., Gonneau, M., Sotta, B., Hugueney, P., Frey, A. and Marion-Poll, A. (1996) Molecular identification of zeaxanthin epoxidase of Nicotiana plumbaginifolia, a gene involved in abscisic acid biosynthesis and corresponding to the ABA locus of Arabidopsis thaliana. EMBO J. 15, 2331-2342.
55. Mather, K. (1951) The Measurement of Linkage in Heredity. London: Methuen/John Wiley.
56. Mizoguchi, T., Hayashida, N., Yamaguchi Shinozaki, K., Kamada, H. and Shinozaki, K. (1995) Two genes that encode ribosomal-protein S6 kinase homologs are induced by cold or salinity stress in Arabidopsis thaliana. FEBS Lett. 358, 199-204.
57. Nordin, K., Vahala, T. and Palva, E.T. (1993) Differential expression of two related low temperature induced genes in Arabidopsis thaliana L. Heynh. Plant Mol. Biol. 21, 641-653.
58. Rouse, D.T., Marotta, R. and Parish, R.W. (1996) Promoter and expression studies on an Arabidopsis thaliana dehydrin gene. FEBS Lett. 381, 252-256.
59. Santos, M., Gousseau, H., Lister, C., Foyer, C., Creissen, G. and Mullineaux, P. (1996) Cytosolic ascorbate peroxidase from Arabidopsis thaliana L. is encoded by a small multigene family. Planta, 198, 64-69.
60. Strizhov, N., Abrahám, E., Ökrész, L., Blickling, S., Zilberstein, A., Schell, J., Koncz, C. and Szabados, L. (1997) Differential accumulation of two P5CS genes controlling proline accumulation during salt stress requires ABA and is regulated by ABAI, ABAII and AXR2 in Arabidopsis. Plant J. 12, 557-569.
61. Uemura, M., Gilmour, S.J., Thomashow, M.F. and Steponkus, P.L. (1996) Effects of COR6.6 and COR15am polypeptides encoded by COR (cold-regulated) genes of Arabidopsis thaliana on the freeze-induced fusion and leakage of liposomes. Plant Physiology, 111, 313-327.
62. Verbruggen, N., Hua, X.J., May, M. and Van Montagu, M. (1996) Environmental and developmental signals modulate proline homeostasis: evidence for a negative transcriptional regulator. Proc. Natl Acad. Sci. USA, 93, 8787-8791.
63. Warren, G., McKown, R., Marin, A. and Teutonico, R. (1996) Isolation of mutations affecting the development of freezing tolerance in Arabidopsis thaliana (L.) Heynh. Plant Physiol. 111, 1011-1019.
64. Webb, M.S., Gilmour, S.J., Thomashow, M.F. and Steponkus, P.L. (1996) Effects of COR6.6 and COR15am polypeptides encoded by COR (cold-regulated) genes of Arabidopsis thaliana on dehydration-induced phase transitions of phospholipid membranes. Plant Physiol. 111, 301-312.
65. Welin, B.V., Olson, A., Nylander, M. and Palva, E.T. (1994) Characterization and differential expression of dhn/lea/rab-like genes during cold acclimation and drought stress in Arabidopsis thaliana. Plant Mol. Biol. 26, 131-144.
66. Welin, B.V., Olson, A. and Palva, E.T. (1995) Structure and organization of two closely-related low-temperature-induced dhn/lea/rab-like genes in Arabidopsis thaliana. Plant Mol. Biol. 29, 391-395.
67. Xin, Z. and Browse, J. (1998) eskimo1 mutants of Arabidopsis are constitutively freezing-tolerant. Proc. Natl Acad. Sci. USA, 95, 7799-7804.